def setFont(self, font):
"""Set the font for the text."""
QGraphicsWidget.setFont(self, font)
for item in self.label_items:
item.setFont(font)
self.layout().invalidate()
self.updateGeometry()
def __init__(self, pixmap, parent=None):
QGraphicsWidget.__init__(self, parent)
self.setCacheMode(QGraphicsItem.ItemCoordinateCache)
self._pixmap = pixmap
self._pixmapSize = QSizeF()
self._keepAspect = True
self.setSizePolicy(QSizePolicy.Fixed, QSizePolicy.Fixed)
def installEventFilter(self, filt):
self.event_filter = filt
self.slider.installEventFilter(filt)
self.slider.label.installEventFilter(filt)
if self.meter:
self.meter.installEventFilter(filt)
QGraphicsWidget.installEventFilter(self, filt)
def __init__(self, pixmap, title="", parent=None):
QGraphicsWidget.__init__(self, parent)
self._title = None
self._size = QSizeF()
layout = QGraphicsLinearLayout(Qt.Vertical, self)
layout.setSpacing(2)
layout.setContentsMargins(5, 5, 5, 5)
self.setContentsMargins(0, 0, 0, 0)
self.pixmapWidget = GraphicsPixmapWidget(pixmap, self)
self.labelWidget = GraphicsTextWidget(title, self)
layout.addItem(self.pixmapWidget)
layout.addItem(self.labelWidget)
layout.setAlignment(self.pixmapWidget, Qt.AlignCenter)
layout.setAlignment(self.labelWidget, Qt.AlignHCenter | Qt.AlignBottom)
self.setLayout(layout)
self.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
self.setFlag(QGraphicsItem.ItemIsSelectable, True)
self.setTitle(title)
self.setTitleWidth(100)
def mouseMoveEvent(self, event):
if event.buttons() & Qt.LeftButton:
downPos = event.buttonDownPos(Qt.LeftButton)
if not self.__tmpLine and self.__dragStartItem and \
(downPos - event.pos()).manhattanLength() > \
QApplication.instance().startDragDistance():
# Start a line drag
line = QGraphicsLineItem(self)
start = self.__dragStartItem.boundingRect().center()
start = self.mapFromItem(self.__dragStartItem, start)
line.setLine(start.x(), start.y(),
event.pos().x(),
event.pos().y())
pen = QPen(Qt.black, 4)
pen.setCapStyle(Qt.RoundCap)
line.setPen(pen)
line.show()
self.__tmpLine = line
if self.__tmpLine:
# Update the temp line
line = self.__tmpLine.line()
line.setP2(event.pos())
self.__tmpLine.setLine(line)
QGraphicsWidget.mouseMoveEvent(self, event)
def __init__(self, pixmap, title="", parent=None):
QGraphicsWidget.__init__(self, parent)
self._title = None
self._size = QSizeF()
layout = QGraphicsLinearLayout(Qt.Vertical, self)
layout.setSpacing(2)
layout.setContentsMargins(5, 5, 5, 5)
self.setContentsMargins(0, 0, 0, 0)
self.pixmapWidget = GraphicsPixmapWidget(pixmap, self)
self.labelWidget = GraphicsTextWidget(title, self)
layout.addItem(self.pixmapWidget)
layout.addItem(self.labelWidget)
layout.setAlignment(self.pixmapWidget, Qt.AlignCenter)
layout.setAlignment(self.labelWidget, Qt.AlignHCenter | Qt.AlignBottom)
self.setLayout(layout)
self.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
self.setFlag(QGraphicsItem.ItemIsSelectable, True)
self.setTitle(title)
self.setTitleWidth(100)
def mouseReleaseEvent(self, event):
if event.button() == Qt.LeftButton and self.__tmpLine:
endItem = find_item_at(self.scene(),
event.scenePos(),
type=ChannelAnchor)
if endItem is not None:
startItem = self.__dragStartItem
startChannel = startItem.channel()
endChannel = endItem.channel()
possible = False
# Make sure the drag was from input to output (or reversed) and
# not between input -> input or output -> output
if type(startChannel) != type(endChannel):
if isinstance(startChannel, InputSignal):
startChannel, endChannel = endChannel, startChannel
possible = compatible_channels(startChannel, endChannel)
if possible:
self.addLink(startChannel, endChannel)
self.scene().removeItem(self.__tmpLine)
self.__tmpLine = None
self.__dragStartItem = None
QGraphicsWidget.mouseReleaseEvent(self, event)
def __init__(self, text, parent=None):
QGraphicsWidget.__init__(self, parent)
self.labelItem = QGraphicsTextItem(self)
self.setHtml(text)
self.labelItem.document().documentLayout().documentSizeChanged.connect(
self.onLayoutChanged)
def mouseMoveEvent(self, event):
if event.buttons() & Qt.LeftButton:
downPos = event.buttonDownPos(Qt.LeftButton)
if not self.__tmpLine and self.__dragStartItem and \
(downPos - event.pos()).manhattanLength() > \
QApplication.instance().startDragDistance():
# Start a line drag
line = QGraphicsLineItem(self)
start = self.__dragStartItem.boundingRect().center()
start = self.mapFromItem(self.__dragStartItem, start)
line.setLine(start.x(), start.y(),
event.pos().x(), event.pos().y())
pen = QPen(Qt.black, 4)
pen.setCapStyle(Qt.RoundCap)
line.setPen(pen)
line.show()
self.__tmpLine = line
if self.__tmpLine:
# Update the temp line
line = self.__tmpLine.line()
line.setP2(event.pos())
self.__tmpLine.setLine(line)
QGraphicsWidget.mouseMoveEvent(self, event)
def mouseReleaseEvent(self, event):
if event.button() == Qt.LeftButton and self.__tmpLine:
endItem = find_item_at(self.scene(), event.scenePos(),
type=ChannelAnchor)
if endItem is not None:
startItem = self.__dragStartItem
startChannel = startItem.channel()
endChannel = endItem.channel()
possible = False
# Make sure the drag was from input to output (or reversed) and
# not between input -> input or output -> output
if type(startChannel) != type(endChannel):
if isinstance(startChannel, InputSignal):
startChannel, endChannel = endChannel, startChannel
possible = compatible_channels(startChannel, endChannel)
if possible:
self.addLink(startChannel, endChannel)
self.scene().removeItem(self.__tmpLine)
self.__tmpLine = None
self.__dragStartItem = None
QGraphicsWidget.mouseReleaseEvent(self, event)
def __init__(self, text, parent=None):
QGraphicsWidget.__init__(self, parent)
self.labelItem = QGraphicsTextItem(self)
self.setHtml(text)
self.labelItem.document().documentLayout().documentSizeChanged.connect(
self.onLayoutChanged
)
def __init__(self, parent=None):
QGraphicsWidget.__init__(self, parent)
self.setSizePolicy(QSizePolicy.Maximum, QSizePolicy.Maximum)
self.setContentsMargins(10, 10, 10, 10)
layout = QGraphicsGridLayout()
layout.setContentsMargins(0, 0, 0, 0)
layout.setSpacing(10)
self.setLayout(layout)
def __init__(self, parent=None):
QGraphicsWidget.__init__(self, parent)
self.setSizePolicy(QSizePolicy.Maximum, QSizePolicy.Maximum)
self.setContentsMargins(10, 10, 10, 10)
layout = QGraphicsGridLayout()
layout.setContentsMargins(0, 0, 0, 0)
layout.setSpacing(10)
self.setLayout(layout)
def paint(o, painter, option, widget):
QGraphicsWidget.paint(o, painter, option, widget)
if o.isSelected():
o.setMarking(painter, QColor(220, 220, 220, 128))
if o._grabbed_locally:
o.setMarking(painter, QColor(255, 255, 255, 192))
elif o._grabbed_by:
# TODO calculate individual color for each playerid
o.setMarking(painter, QColor(255, 0, 0, 128))
def __init__(self,parent):
QGraphicsWidget.__init__(self)
self.applet = parent
self.pa = None
self.last_resize_running = datetime.datetime.now()
self.last_resize_running_timer_running = False
self.card_infos = {}
self.ladspa_index = 1
self.setFocusPolicy(Qt.TabFocus)
def __init__(self, labels=[], orientation=Qt.Vertical, parent=None):
QGraphicsWidget.__init__(self, parent)
layout = QGraphicsLinearLayout(orientation)
layout.setContentsMargins(0, 0, 0, 0)
layout.setSpacing(0)
self.setLayout(layout)
self.orientation = orientation
self.alignment = Qt.AlignCenter
self.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.label_items = []
self.set_labels(labels)
def __init__(self, labels=[], orientation=Qt.Vertical, alignment=Qt.AlignCenter, parent=None):
QGraphicsWidget.__init__(self, parent)
layout = QGraphicsLinearLayout(orientation)
layout.setContentsMargins(0, 0, 0, 0)
layout.setSpacing(0)
self.setLayout(layout)
self.orientation = orientation
self.alignment = alignment
self.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.label_items = []
self.set_labels(labels)
def setFont(self, font):
"""Set the font for the text."""
QGraphicsWidget.setFont(self, font)
for item in self.label_items:
item.setFont(font)
layout = self.layout()
for i in range(layout.count()):
layout.itemAt(i).updateGeometry()
self.layout().activate()
self.updateGeometry()
def setFont(self, font):
"""Set the font for the text."""
QGraphicsWidget.setFont(self, font)
for item in self.label_items:
item.setFont(font)
layout = self.layout()
for i in range(layout.count()):
layout.itemAt(i).updateGeometry()
self.layout().activate()
self.updateGeometry()
def __init__(self, parent=None, root=None, orientation=Left):
QGraphicsWidget.__init__(self, parent)
self.orientation = orientation
self._root = None
self._highlighted_item = None
#: a list of selected items
self._selection = OrderedDict()
#: a {node: item} mapping
self._items = {}
#: container for all cluster items.
self._itemgroup = QGraphicsWidget(self)
self._itemgroup.setGeometry(self.contentsRect())
self._cluster_parent = {}
self.setContentsMargins(5, 5, 5, 5)
self.set_root(root)
def __init__(self, parent=None, root=None, orientation=Left):
QGraphicsWidget.__init__(self, parent)
self.orientation = orientation
self._root = None
self._highlighted_item = None
#: a list of selected items
self._selection = OrderedDict()
#: a {node: item} mapping
self._items = {}
#: container for all cluster items.
self._itemgroup = QGraphicsWidget(self)
self._itemgroup.setGeometry(self.contentsRect())
self._cluster_parent = {}
self.setContentsMargins(5, 5, 5, 5)
self.set_root(root)
def __init__(self, show_unit_value = False, unit_symbol="%"):
QGraphicsWidget.__init__(self)
self.meter = None
self.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Fixed,True))
self.slider = LabelSlider(show_unit_value, unit_symbol)
self.slider.setParent(self)
self.slider.volumeChanged.connect(self.on_volume_changed)
self.layout = QGraphicsLinearLayout(Qt.Vertical)
self.layout.setContentsMargins(2,2,2,0)
self.setLayout(self.layout)
self.layout.addItem(self.slider)
self.connect(self, SIGNAL("geometryChanged()"), self._resize_widgets)
def __init__(self,
parent=None,
direction=Qt.LeftToRight,
node=None,
icon=None,
iconSize=None,
**args):
QGraphicsWidget.__init__(self, parent, **args)
self.setAcceptedMouseButtons(Qt.NoButton)
self.__direction = direction
self.setLayout(QGraphicsLinearLayout(Qt.Horizontal))
# Set the maximum size, otherwise the layout can't grow beyond its
# sizeHint (and we need it to grow so the widget can grow and keep the
# contents centered vertically.
self.layout().setMaximumSize(QSizeF(QWIDGETSIZE_MAX, QWIDGETSIZE_MAX))
self.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
self.__iconSize = iconSize or QSize(64, 64)
self.__icon = icon
self.__iconItem = QGraphicsPixmapItem(self)
self.__iconLayoutItem = GraphicsItemLayoutItem(item=self.__iconItem)
self.__channelLayout = QGraphicsGridLayout()
self.__channelAnchors = []
if self.__direction == Qt.LeftToRight:
self.layout().addItem(self.__iconLayoutItem)
self.layout().addItem(self.__channelLayout)
channel_alignemnt = Qt.AlignRight
else:
self.layout().addItem(self.__channelLayout)
self.layout().addItem(self.__iconLayoutItem)
channel_alignemnt = Qt.AlignLeft
self.layout().setAlignment(self.__iconLayoutItem, Qt.AlignCenter)
self.layout().setAlignment(self.__channelLayout,
Qt.AlignVCenter | channel_alignemnt)
if node is not None:
self.setSchemeNode(node)
def createMiddle(self):
self.middle = QGraphicsWidget()
self.middle_layout = QGraphicsLinearLayout(Qt.Vertical)
#self.middle_layout.setContentsMargins(6,8,6,0)
self.middle_layout.setContentsMargins(0,0,0,0)
self.middle.setLayout(self.middle_layout)
self.middle.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Minimum))
self.createSlider()
self.middle_layout.addItem(self.slider)
def sizeHint(self, which, constraint=QSizeF()):
# TODO: More sensible size hints.
# If the text is a plain text or html
# Check how QLabel.sizeHint works.
if which == Qt.PreferredSize:
return self.__textItem.boundingRect().size()
else:
return QGraphicsWidget.sizeHint(self, which, constraint)
def sizeHint(self, which, constraint=QSizeF()):
# TODO: More sensible size hints.
# If the text is a plain text or html
# Check how QLabel.sizeHint works.
if which == Qt.PreferredSize:
return self.__textItem.boundingRect().size()
else:
return QGraphicsWidget.sizeHint(self, which, constraint)
def switchView(self, startup=False):
if self.showsTabs:
self.scrolled_panel_layout = QGraphicsLinearLayout(Qt.Vertical)
scrolled_panel = QGraphicsWidget()
scrolled_panel.setLayout(self.scrolled_panel_layout)
self.scrolled_panel_layout.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding))
self.scrolled_panel_layout.addItem(self.source_panel)
self.scrolled_panel_layout.addItem(self.sink_panel)
else:
scrolled_panel = Plasma.TabBar()
scrolled_panel.addTab(i18n("Playback"), self.sink_panel)
scrolled_panel.addTab(i18n("Record"), self.source_panel)
self.source_panel.show()
self.scrolled_panel = scrolled_panel
self.showsTabs = not self.showsTabs
self.scroller.setWidget(self.scrolled_panel)
if not startup:
self.check_geometries()
def init(self):
self.setAcceptsHoverEvents (True)
self.layout = QGraphicsLinearLayout(Qt.Vertical, self)
self.layout.setSizePolicy(QSizePolicy(QSizePolicy.Minimum, QSizePolicy.Minimum))
self.scroller = LockableScrollWidget(self)
self.scroller.setMinimumSize(120,90)
self.layout.addItem(self.scroller)
if self.applet.formFactor() != Plasma.Planar :
self.scroller.setVerticalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
self.source_panel = QGraphicsWidget()
self.sink_panel = QGraphicsWidget()
self.scrolled_panel_layout = QGraphicsLinearLayout(Qt.Vertical)
self.scrolled_panel_widget = QGraphicsWidget()
self.scrolled_panel_widget.setLayout(self.scrolled_panel_layout)
self.scrolled_panel_layout.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding))
self.scrolled_panel_layout.setContentsMargins(0,0,0,6)
self.showsTabs = not self.applet.useTabs()
self.switchView(True)
self.source_panel_layout = SortedLayout(Qt.Vertical, False)
self.source_panel_layout.setSpacing(0)
self.source_panel.setLayout(self.source_panel_layout)
self.source_panel_layout.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding))
if self.showsTabs:
self.source_panel_layout.addStretch()
self.sink_panel_layout = SortedLayout(Qt.Vertical, False)
self.sink_panel_layout.setSpacing(0)
self.sink_panel.setLayout(self.sink_panel_layout)
self.sink_panel_layout.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding))
self.layout.setContentsMargins(0,0,0,0)
self.source_panel_layout.setContentsMargins(0,0,0,0)
self.sink_panel_layout.setContentsMargins(0,0,0,0)
#QTimer.singleShot(4000, self.start_pa)
self.start_pa()
self.connect_mediaplayers()
def mousePressEvent(self, event):
if event.button() == Qt.LeftButton:
startItem = find_item_at(self.scene(), event.pos(), type=ChannelAnchor)
if startItem is not None:
# Start a connection line drag.
self.__dragStartItem = startItem
self.__tmpLine = None
event.accept()
return
lineItem = find_item_at(self.scene(), event.scenePos(), type=QGraphicsLineItem)
if lineItem is not None:
# Remove a connection under the mouse
for link in self.__links:
if link.lineItem == lineItem:
self.removeLink(link.output, link.input)
event.accept()
return
QGraphicsWidget.mousePressEvent(self, event)
def __init__(self, parent=None, direction=Qt.LeftToRight,
node=None, icon=None, iconSize=None, **args):
QGraphicsWidget.__init__(self, parent, **args)
self.setAcceptedMouseButtons(Qt.NoButton)
self.__direction = direction
self.setLayout(QGraphicsLinearLayout(Qt.Horizontal))
# Set the maximum size, otherwise the layout can't grow beyond its
# sizeHint (and we need it to grow so the widget can grow and keep the
# contents centered vertically.
self.layout().setMaximumSize(QSizeF(QWIDGETSIZE_MAX, QWIDGETSIZE_MAX))
self.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
self.__iconSize = iconSize or QSize(64, 64)
self.__icon = icon
self.__iconItem = QGraphicsPixmapItem(self)
self.__iconLayoutItem = GraphicsItemLayoutItem(item=self.__iconItem)
self.__channelLayout = QGraphicsGridLayout()
self.__channelAnchors = []
if self.__direction == Qt.LeftToRight:
self.layout().addItem(self.__iconLayoutItem)
self.layout().addItem(self.__channelLayout)
channel_alignemnt = Qt.AlignRight
else:
self.layout().addItem(self.__channelLayout)
self.layout().addItem(self.__iconLayoutItem)
channel_alignemnt = Qt.AlignLeft
self.layout().setAlignment(self.__iconLayoutItem, Qt.AlignCenter)
self.layout().setAlignment(self.__channelLayout,
Qt.AlignVCenter | channel_alignemnt)
if node is not None:
self.setSchemeNode(node)
def __init__(self, *args, **kwargs):
QGraphicsWidget.__init__(self, *args, **kwargs)
self.setAcceptedMouseButtons(Qt.LeftButton | Qt.RightButton)
self.source = None
self.sink = None
# QGraphicsWidget/Items in the scene.
self.sourceNodeWidget = None
self.sourceNodeTitle = None
self.sinkNodeWidget = None
self.sinkNodeTitle = None
self.__links = []
self.__textItems = []
self.__iconItems = []
self.__tmpLine = None
self.__dragStartItem = None
self.setLayout(QGraphicsLinearLayout(Qt.Vertical))
self.layout().setContentsMargins(0, 0, 0, 0)
def __init__(self , parent):
QGraphicsWidget.__init__(self)
self.veromix = parent
self.index = -1
self.pa = parent.getPulseAudio()
self.set_name("")
self.deleted = True
self.pa_sink = None
self.extended_panel_shown = False
self.extended_panel= None
self.show_meter = True
self.expander = None
self.popup_menu = None
self.card_settings = None
self.menus = None
self.port_actions = None
self.double_click_filter = ChannelEventFilter(self)
self.installEventFilter(self.double_click_filter)
self.init()
self.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Fixed,True))
def __init__(self, *args, **kwargs):
QGraphicsWidget.__init__(self, *args, **kwargs)
self.setAcceptedMouseButtons(Qt.LeftButton | Qt.RightButton)
self.source = None
self.sink = None
# QGraphicsWidget/Items in the scene.
self.sourceNodeWidget = None
self.sourceNodeTitle = None
self.sinkNodeWidget = None
self.sinkNodeTitle = None
self.__links = []
self.__textItems = []
self.__iconItems = []
self.__tmpLine = None
self.__dragStartItem = None
self.setLayout(QGraphicsLinearLayout(Qt.Vertical))
self.layout().setContentsMargins(0, 0, 0, 0)
def sizeHint(self, which, constraint=QSizeF()):
if which == Qt.PreferredSize:
doc = self.document()
textwidth = doc.textWidth()
if textwidth != constraint.width():
cloned = doc.clone(self)
cloned.setTextWidth(constraint.width())
sh = cloned.size()
cloned.deleteLater()
else:
sh = doc.size()
return sh
else:
return QGraphicsWidget.sizeHint(self, which, constraint)
def create_settings_widget(self):
self.createLengthLabel()
self.createPositionLabel()
self.createSlider()
self.extended_panel = QGraphicsWidget(self.frame)
self.extended_panel_layout = QGraphicsLinearLayout(Qt.Horizontal)
self.extended_panel.setLayout(self.extended_panel_layout)
self.extended_panel.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Minimum))
self.position_label.setSizePolicy(QSizePolicy(QSizePolicy.Minimum, QSizePolicy.Minimum))
self.length_label.setSizePolicy(QSizePolicy(QSizePolicy.Minimum, QSizePolicy.Minimum))
self.extended_panel_layout.addItem(self.position_label)
self.extended_panel_layout.addItem(self.slider)
self.extended_panel_layout.addItem(self.length_label)
def mousePressEvent(self, event):
if event.button() == Qt.LeftButton:
startItem = find_item_at(self.scene(),
event.pos(),
type=ChannelAnchor)
if startItem is not None:
# Start a connection line drag.
self.__dragStartItem = startItem
self.__tmpLine = None
event.accept()
return
lineItem = find_item_at(self.scene(),
event.scenePos(),
type=QGraphicsLineItem)
if lineItem is not None:
# Remove a connection under the mouse
for link in self.__links:
if link.lineItem == lineItem:
self.removeLink(link.output, link.input)
event.accept()
return
QGraphicsWidget.mousePressEvent(self, event)
def mousePressEvent(self, event):
QGraphicsWidget.mousePressEvent(self, event)
# A mouse press on an empty widget part
if event.modifiers() == Qt.NoModifier and self._selection:
self.set_selected_clusters([])
def sizeHint(self, which, constraint=QSizeF()):
if which == Qt.PreferredSize:
return self.pixmapSize()
else:
return QGraphicsWidget.sizeHint(self, which, constraint)
def __init__(self, pixmap, parent=None):
QGraphicsWidget.__init__(self, parent)
self.setCacheMode(QGraphicsItem.ItemCoordinateCache)
self._pixmap = pixmap
self._pixmapSize = QSizeF()
self.setSizePolicy(QSizePolicy.Fixed, QSizePolicy.Fixed)
def sizeHint(self, which, constraint=QRectF()):
if not self.isVisible():
return QSizeF(0, 0)
else:
return QGraphicsWidget.sizeHint(self, which, constraint)
def setGeometry(self, rect):
QGraphicsWidget.setGeometry(self, rect)
self.__textItem.setTextWidth(rect.width())
def __init__(self, parent=None):
super().__init__(parent)
self.matrix = None
self.items = None
self.linkmatrix = None
self.root = None
self._displayed_root = None
self.cutoff_height = 0.0
gui.comboBox(gui.widgetBox(self.controlArea, "Linkage"),
self, "linkage", items=LINKAGE,
callback=self._invalidate_clustering)
box = gui.widgetBox(self.controlArea, "Annotation")
self.label_cb = gui.comboBox(
box, self, "annotation_idx", callback=self._update_labels)
self.label_cb.setModel(itemmodels.VariableListModel())
self.label_cb.model()[:] = ["None", "Enumeration"]
box = gui.radioButtons(
self.controlArea, self, "pruning", box="Pruning",
callback=self._invalidate_pruning
)
grid = QGridLayout()
box.layout().addLayout(grid)
grid.addWidget(
gui.appendRadioButton(box, "None", addToLayout=False),
0, 0
)
self.max_depth_spin = gui.spin(
box, self, "max_depth", minv=1, maxv=100,
callback=self._invalidate_pruning,
keyboardTracking=False
)
grid.addWidget(
gui.appendRadioButton(box, "Max depth", addToLayout=False),
1, 0)
grid.addWidget(self.max_depth_spin, 1, 1)
box = gui.radioButtons(
self.controlArea, self, "selection_method",
box="Selection",
callback=self._selection_method_changed)
grid = QGridLayout()
box.layout().addLayout(grid)
grid.addWidget(
gui.appendRadioButton(box, "Manual", addToLayout=False),
0, 0
)
grid.addWidget(
gui.appendRadioButton(box, "Height ratio", addToLayout=False),
1, 0
)
self.cut_ratio_spin = gui.spin(
box, self, "cut_ratio", 0, 100, step=1e-1, spinType=float,
callback=self._selection_method_changed
)
self.cut_ratio_spin.setSuffix("%")
grid.addWidget(self.cut_ratio_spin, 1, 1)
grid.addWidget(
gui.appendRadioButton(box, "Top N", addToLayout=False),
2, 0
)
self.top_n_spin = gui.spin(box, self, "top_n", 1, 20,
callback=self._selection_method_changed)
grid.addWidget(self.top_n_spin, 2, 1)
box.layout().addLayout(grid)
self.controlArea.layout().addStretch()
box = gui.widgetBox(self.controlArea, "Output")
gui.checkBox(box, self, "append_clusters", "Append cluster IDs",
callback=self._invalidate_output)
ibox = gui.indentedBox(box)
name_edit = gui.lineEdit(ibox, self, "cluster_name")
name_edit.editingFinished.connect(self._invalidate_output)
cb = gui.comboBox(
ibox, self, "cluster_role", callback=self._invalidate_output,
items=["Attribute",
"Class variable",
"Meta variable"]
)
form = QFormLayout(
fieldGrowthPolicy=QFormLayout.AllNonFixedFieldsGrow,
labelAlignment=Qt.AlignLeft,
spacing=8
)
form.addRow("Name", name_edit)
form.addRow("Place", cb)
ibox.layout().addSpacing(5)
ibox.layout().addLayout(form)
ibox.layout().addSpacing(5)
gui.auto_commit(box, self, "autocommit", "Send data", "Auto send is on",
box=False)
self.scene = QGraphicsScene()
self.view = QGraphicsView(
self.scene,
horizontalScrollBarPolicy=Qt.ScrollBarAlwaysOff,
verticalScrollBarPolicy=Qt.ScrollBarAlwaysOn,
alignment=Qt.AlignLeft | Qt.AlignVCenter
)
def axis_view(orientation):
ax = pg.AxisItem(orientation=orientation, maxTickLength=7)
scene = QGraphicsScene()
scene.addItem(ax)
view = QGraphicsView(
scene,
horizontalScrollBarPolicy=Qt.ScrollBarAlwaysOff,
verticalScrollBarPolicy=Qt.ScrollBarAlwaysOn,
alignment=Qt.AlignLeft | Qt.AlignVCenter
)
view.setFixedHeight(ax.size().height())
ax.line = SliderLine(orientation=Qt.Horizontal,
length=ax.size().height())
scene.addItem(ax.line)
return view, ax
self.top_axis_view, self.top_axis = axis_view("top")
self.mainArea.layout().setSpacing(1)
self.mainArea.layout().addWidget(self.top_axis_view)
self.mainArea.layout().addWidget(self.view)
self.bottom_axis_view, self.bottom_axis = axis_view("bottom")
self.mainArea.layout().addWidget(self.bottom_axis_view)
self._main_graphics = QGraphicsWidget()
self._main_layout = QGraphicsLinearLayout(Qt.Horizontal)
self._main_layout.setSpacing(1)
self._main_graphics.setLayout(self._main_layout)
self.scene.addItem(self._main_graphics)
self.dendrogram = DendrogramWidget()
self.dendrogram.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
self.dendrogram.selectionChanged.connect(self._invalidate_output)
self.dendrogram.selectionEdited.connect(self._selection_edited)
fm = self.fontMetrics()
self.dendrogram.setContentsMargins(
5, fm.lineSpacing() / 2,
5, fm.lineSpacing() / 2
)
self.labels = GraphicsSimpleTextList()
self.labels.setSizePolicy(QSizePolicy.Preferred, QSizePolicy.Preferred)
self.labels.setAlignment(Qt.AlignLeft)
self.labels.setMaximumWidth(200)
self.labels.layout().setSpacing(0)
self._main_layout.addItem(self.dendrogram)
self._main_layout.addItem(self.labels)
self._main_layout.setAlignment(
self.dendrogram, Qt.AlignLeft | Qt.AlignVCenter)
self._main_layout.setAlignment(
self.labels, Qt.AlignLeft | Qt.AlignVCenter)
self.view.viewport().installEventFilter(self)
self.top_axis_view.viewport().installEventFilter(self)
self.bottom_axis_view.viewport().installEventFilter(self)
self._main_graphics.installEventFilter(self)
self.cut_line = SliderLine(self.dendrogram,
orientation=Qt.Horizontal)
self.cut_line.valueChanged.connect(self._dendrogram_slider_changed)
self.cut_line.hide()
self.bottom_axis.line.valueChanged.connect(self._axis_slider_changed)
self.top_axis.line.valueChanged.connect(self._axis_slider_changed)
self.dendrogram.geometryChanged.connect(self._dendrogram_geom_changed)
self._set_cut_line_visible(self.selection_method == 1)
def setVisible(self, visible):
QGraphicsWidget.setVisible(self, visible)
self.updateGeometry()
def __updateState(self):
"""
Update the widget with the new source/sink node signal descriptions.
"""
widget = QGraphicsWidget()
widget.setLayout(QGraphicsGridLayout())
# Space between left and right anchors
widget.layout().setHorizontalSpacing(50)
left_node = EditLinksNode(self, direction=Qt.LeftToRight,
node=self.source)
left_node.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
right_node = EditLinksNode(self, direction=Qt.RightToLeft,
node=self.sink)
right_node.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
left_node.setMinimumWidth(150)
right_node.setMinimumWidth(150)
widget.layout().addItem(left_node, 0, 0,)
widget.layout().addItem(right_node, 0, 1,)
title_template = "<center><b>{0}<b></center>"
left_title = GraphicsTextWidget(self)
left_title.setHtml(title_template.format(escape(self.source.title)))
left_title.setSizePolicy(QSizePolicy.Fixed, QSizePolicy.Fixed)
right_title = GraphicsTextWidget(self)
right_title.setHtml(title_template.format(escape(self.sink.title)))
right_title.setSizePolicy(QSizePolicy.Fixed, QSizePolicy.Fixed)
widget.layout().addItem(left_title, 1, 0,
alignment=Qt.AlignHCenter | Qt.AlignTop)
widget.layout().addItem(right_title, 1, 1,
alignment=Qt.AlignHCenter | Qt.AlignTop)
widget.setParentItem(self)
max_w = max(left_node.sizeHint(Qt.PreferredSize).width(),
right_node.sizeHint(Qt.PreferredSize).width())
# fix same size
left_node.setMinimumWidth(max_w)
right_node.setMinimumWidth(max_w)
left_title.setMinimumWidth(max_w)
right_title.setMinimumWidth(max_w)
self.layout().addItem(widget)
self.layout().activate()
self.sourceNodeWidget = left_node
self.sinkNodeWidget = right_node
self.sourceNodeTitle = left_title
self.sinkNodeTitle = right_title
class OWHierarchicalClustering(widget.OWWidget):
name = "Hierarchical Clustering"
description = ("Hierarchical clustering based on distance matrix, and "
"a dendrogram viewer.")
icon = "icons/HierarchicalClustering.svg"
priority = 2100
inputs = [("Distances", Orange.misc.DistMatrix, "set_distances")]
outputs = [("Selected Data", Orange.data.Table),
("Other Data", Orange.data.Table)]
#: Selected linkage
linkage = settings.Setting(1)
#: Index of the selected annotation item (variable, ...)
annotation_idx = settings.Setting(0)
#: Selected tree pruning (none/max depth)
pruning = settings.Setting(0)
#: Maximum depth when max depth pruning is selected
max_depth = settings.Setting(10)
#: Selected cluster selection method (none, cut distance, top n)
selection_method = settings.Setting(0)
#: Cut height ratio wrt root height
cut_ratio = settings.Setting(75.0)
#: Number of top clusters to select
top_n = settings.Setting(3)
append_clusters = settings.Setting(True)
cluster_role = settings.Setting(2)
cluster_name = settings.Setting("Cluster")
autocommit = settings.Setting(False)
#: Cluster variable domain role
AttributeRole, ClassRole, MetaRole = 0, 1, 2
def __init__(self, parent=None):
super().__init__(parent)
self.matrix = None
self.items = None
self.linkmatrix = None
self.root = None
self._displayed_root = None
self.cutoff_height = 0.0
self._invalidated = False
gui.comboBox(gui.widgetBox(self.controlArea, "Linkage"),
self,
"linkage",
items=LINKAGE,
callback=self._invalidate_clustering)
box = gui.widgetBox(self.controlArea, "Annotation")
self.label_cb = gui.comboBox(box,
self,
"annotation_idx",
callback=self._update_labels)
self.label_cb.setModel(itemmodels.VariableListModel())
self.label_cb.model()[:] = ["None", "Enumeration"]
box = gui.radioButtons(self.controlArea,
self,
"pruning",
box="Pruning",
callback=self._invalidate_pruning)
grid = QGridLayout()
box.layout().addLayout(grid)
grid.addWidget(gui.appendRadioButton(box, "None", addToLayout=False),
0, 0)
self.max_depth_spin = gui.spin(box,
self,
"max_depth",
minv=1,
maxv=100,
callback=self._invalidate_pruning,
keyboardTracking=False)
grid.addWidget(
gui.appendRadioButton(box, "Max depth", addToLayout=False), 1, 0)
grid.addWidget(self.max_depth_spin, 1, 1)
box = gui.radioButtons(self.controlArea,
self,
"selection_method",
box="Selection",
callback=self._selection_method_changed)
grid = QGridLayout()
box.layout().addLayout(grid)
grid.addWidget(gui.appendRadioButton(box, "Manual", addToLayout=False),
0, 0)
grid.addWidget(
gui.appendRadioButton(box, "Height ratio", addToLayout=False), 1,
0)
self.cut_ratio_spin = gui.spin(box,
self,
"cut_ratio",
0,
100,
step=1e-1,
spinType=float,
callback=self._selection_method_changed)
self.cut_ratio_spin.setSuffix("%")
grid.addWidget(self.cut_ratio_spin, 1, 1)
grid.addWidget(gui.appendRadioButton(box, "Top N", addToLayout=False),
2, 0)
self.top_n_spin = gui.spin(box,
self,
"top_n",
1,
20,
callback=self._selection_method_changed)
grid.addWidget(self.top_n_spin, 2, 1)
box.layout().addLayout(grid)
self.controlArea.layout().addStretch()
box = gui.widgetBox(self.controlArea, "Output")
gui.checkBox(box,
self,
"append_clusters",
"Append cluster IDs",
callback=self._invalidate_output)
ibox = gui.indentedBox(box)
name_edit = gui.lineEdit(ibox, self, "cluster_name")
name_edit.editingFinished.connect(self._invalidate_output)
cb = gui.comboBox(
ibox,
self,
"cluster_role",
callback=self._invalidate_output,
items=["Attribute", "Class variable", "Meta variable"])
form = QFormLayout(fieldGrowthPolicy=QFormLayout.AllNonFixedFieldsGrow,
labelAlignment=Qt.AlignLeft,
spacing=8)
form.addRow("Name", name_edit)
form.addRow("Place", cb)
ibox.layout().addSpacing(5)
ibox.layout().addLayout(form)
ibox.layout().addSpacing(5)
cb = gui.checkBox(box, self, "autocommit", "Commit automatically")
b = gui.button(box, self, "Commit", callback=self.commit, default=True)
gui.setStopper(self, b, cb, "_invalidated", callback=self.commit)
self.scene = QGraphicsScene()
self.view = QGraphicsView(
self.scene,
horizontalScrollBarPolicy=Qt.ScrollBarAlwaysOff,
verticalScrollBarPolicy=Qt.ScrollBarAlwaysOn,
alignment=Qt.AlignLeft | Qt.AlignVCenter)
def axis_view(orientation):
ax = pg.AxisItem(orientation=orientation, maxTickLength=7)
scene = QGraphicsScene()
scene.addItem(ax)
view = QGraphicsView(
scene,
horizontalScrollBarPolicy=Qt.ScrollBarAlwaysOff,
verticalScrollBarPolicy=Qt.ScrollBarAlwaysOn,
alignment=Qt.AlignLeft | Qt.AlignVCenter)
view.setFixedHeight(ax.size().height())
ax.line = SliderLine(orientation=Qt.Horizontal,
length=ax.size().height())
scene.addItem(ax.line)
return view, ax
self.top_axis_view, self.top_axis = axis_view("top")
self.mainArea.layout().setSpacing(1)
self.mainArea.layout().addWidget(self.top_axis_view)
self.mainArea.layout().addWidget(self.view)
self.bottom_axis_view, self.bottom_axis = axis_view("bottom")
self.mainArea.layout().addWidget(self.bottom_axis_view)
self._main_graphics = QGraphicsWidget()
self._main_layout = QGraphicsLinearLayout(Qt.Horizontal)
self._main_layout.setSpacing(1)
self._main_graphics.setLayout(self._main_layout)
self.scene.addItem(self._main_graphics)
self.dendrogram = DendrogramWidget()
self.dendrogram.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
self.dendrogram.selectionChanged.connect(self._invalidate_output)
self.dendrogram.selectionEdited.connect(self._selection_edited)
fm = self.fontMetrics()
self.dendrogram.setContentsMargins(5,
fm.lineSpacing() / 2, 5,
fm.lineSpacing() / 2)
self.labels = GraphicsSimpleTextList()
self.labels.setSizePolicy(QSizePolicy.Preferred, QSizePolicy.Preferred)
self.labels.setAlignment(Qt.AlignLeft)
self.labels.setMaximumWidth(200)
self.labels.layout().setSpacing(0)
self._main_layout.addItem(self.dendrogram)
self._main_layout.addItem(self.labels)
self._main_layout.setAlignment(self.dendrogram,
Qt.AlignLeft | Qt.AlignVCenter)
self._main_layout.setAlignment(self.labels,
Qt.AlignLeft | Qt.AlignVCenter)
self.view.viewport().installEventFilter(self)
self.top_axis_view.viewport().installEventFilter(self)
self.bottom_axis_view.viewport().installEventFilter(self)
self._main_graphics.installEventFilter(self)
self.cut_line = SliderLine(self.dendrogram, orientation=Qt.Horizontal)
self.cut_line.valueChanged.connect(self._dendrogram_slider_changed)
self.cut_line.hide()
self.bottom_axis.line.valueChanged.connect(self._axis_slider_changed)
self.top_axis.line.valueChanged.connect(self._axis_slider_changed)
self.dendrogram.geometryChanged.connect(self._dendrogram_geom_changed)
self._set_cut_line_visible(self.selection_method == 1)
def set_distances(self, matrix):
self.matrix = matrix
self._invalidate_clustering()
self._set_items(matrix.row_items if matrix is not None else None)
def _set_items(self, items):
self.items = items
if items is None:
self.label_cb.model()[:] = ["None", "Enumeration"]
elif isinstance(items, Orange.data.Table):
vars = list(items.domain)
self.label_cb.model()[:] = ["None", "Enumeration"] + vars
elif isinstance(items, list) and \
all(isinstance(var, Orange.data.Variable) for var in items):
self.label_cb.model()[:] = ["None", "Enumeration", "Name"]
else:
self.label_cb.model()[:] = ["None", "Enumeration"]
self.annotation_idx = min(self.annotation_idx,
len(self.label_cb.model()) - 1)
def handleNewSignals(self):
self._update_labels()
def _clear_plot(self):
self.labels.set_labels([])
self.dendrogram.set_root(None)
def _set_displayed_root(self, root):
self._clear_plot()
self._displayed_root = root
self.dendrogram.set_root(root)
self._update_labels()
self._main_graphics.resize(
self._main_graphics.size().width(),
self._main_graphics.sizeHint(Qt.PreferredSize).height())
self._main_graphics.layout().activate()
def _update(self):
self._clear_plot()
distances = self.matrix
if distances is not None:
# Convert to flat upper triangular distances
i, j = numpy.triu_indices(distances.X.shape[0], k=1)
distances = distances.X[i, j]
method = LINKAGE[self.linkage].lower()
Z = scipy.cluster.hierarchy.linkage(distances, method=method)
tree = tree_from_linkage(Z)
self.linkmatrix = Z
self.root = tree
self.top_axis.setRange(tree.value.height, 0.0)
self.bottom_axis.setRange(tree.value.height, 0.0)
if self.pruning:
self._set_displayed_root(prune(tree, level=self.max_depth))
else:
self._set_displayed_root(tree)
else:
self.linkmatrix = None
self.root = None
self._set_displayed_root(None)
self._apply_selection()
def _update_labels(self):
labels = []
if self.root and self._displayed_root:
indices = [leaf.value.index for leaf in leaves(self.root)]
if self.annotation_idx == 0:
labels = []
elif self.annotation_idx == 1:
labels = [str(i) for i in indices]
elif isinstance(self.items, Orange.data.Table):
var = self.label_cb.model()[self.annotation_idx]
col = self.items[:, var]
labels = [var.repr_val(next(iter(row))) for row in col]
labels = [labels[idx] for idx in indices]
else:
labels = []
if labels and self._displayed_root is not self.root:
joined = leaves(self._displayed_root)
labels = [
", ".join(labels[leaf.value.first:leaf.value.last])
for leaf in joined
]
self.labels.set_labels(labels)
self.labels.setMinimumWidth(1 if labels else -1)
def _invalidate_clustering(self):
self._update()
self._update_labels()
def _invalidate_output(self):
self._invalidated = True
if self.autocommit:
self.commit()
def _invalidate_pruning(self):
if self.root:
selection = self.dendrogram.selected_nodes()
ranges = [node.value.range for node in selection]
if self.pruning:
self._set_displayed_root(prune(self.root,
level=self.max_depth))
else:
self._set_displayed_root(self.root)
selected = [
node for node in preorder(self._displayed_root)
if node.value.range in ranges
]
self.dendrogram.set_selected_clusters(selected)
self._apply_selection()
def commit(self):
self._invalidated = False
items = getattr(self.matrix, "items", self.items)
if not items:
# nothing to commit
return
selection = self.dendrogram.selected_nodes()
selection = sorted(selection, key=lambda c: c.value.first)
indices = [leaf.value.index for leaf in leaves(self.root)]
maps = [
indices[node.value.first:node.value.last] for node in selection
]
selected_indices = list(chain(*maps))
unselected_indices = sorted(
set(range(self.root.value.last)) - set(selected_indices))
selected = [items[k] for k in selected_indices]
unselected = [items[k] for k in unselected_indices]
if not selected:
self.send("Selected Data", None)
self.send("Other Data", None)
return
selected_data = unselected_data = None
if isinstance(items, Orange.data.Table):
c = numpy.zeros(len(items))
for i, indices in enumerate(maps):
c[indices] = i
c[unselected_indices] = len(maps)
mask = c != len(maps)
if self.append_clusters:
clust_var = Orange.data.DiscreteVariable(
str(self.cluster_name),
values=[
"Cluster {}".format(i + 1) for i in range(len(maps))
] + ["Other"])
data, domain = items, items.domain
attrs = domain.attributes
class_ = domain.class_vars
metas = domain.metas
X, Y, M = data.X, data.Y, data.metas
if self.cluster_role == self.AttributeRole:
attrs = attrs + (clust_var, )
X = numpy.c_[X, c]
elif self.cluster_role == self.ClassRole:
class_ = class_ + (clust_var, )
Y = numpy.c_[Y, c]
elif self.cluster_role == self.MetaRole:
metas = metas + (clust_var, )
M = numpy.c_[M, c]
domain = Orange.data.Domain(attrs, class_, metas)
data = Orange.data.Table(domain, X, Y, M)
else:
data = items
if selected:
selected_data = data[mask]
if unselected:
unselected_data = data[~mask]
self.send("Selected Data", selected_data)
self.send("Other Data", unselected_data)
def sizeHint(self):
return QSize(800, 500)
def eventFilter(self, obj, event):
if obj is self.view.viewport() and event.type() == QEvent.Resize:
width = self.view.viewport().width() - 2
self._main_graphics.setMaximumWidth(width)
self._main_graphics.setMinimumWidth(width)
self._main_graphics.layout().activate()
elif event.type() == QEvent.MouseButtonPress and \
(obj is self.top_axis_view.viewport() or
obj is self.bottom_axis_view.viewport()):
self.selection_method = 1
# Map click point to cut line local coordinates
pos = self.top_axis_view.mapToScene(event.pos())
cut = self.top_axis.line.mapFromScene(pos)
self.top_axis.line.setValue(cut.x())
# update the line visibility, output, ...
self._selection_method_changed()
return super().eventFilter(obj, event)
def _dendrogram_geom_changed(self):
pos = self.dendrogram.pos_at_height(self.cutoff_height)
geom = self.dendrogram.geometry()
crect = self.dendrogram.contentsRect()
self._set_slider_value(pos.x(), geom.width())
self.cut_line.setLength(geom.height())
self.top_axis.resize(crect.width(), self.top_axis.height())
self.top_axis.setPos(geom.left() + crect.left(), 0)
self.top_axis.line.setPos(self.cut_line.scenePos().x(), 0)
self.bottom_axis.resize(crect.width(), self.bottom_axis.height())
self.bottom_axis.setPos(geom.left() + crect.left(), 0)
self.bottom_axis.line.setPos(self.cut_line.scenePos().x(), 0)
geom = self._main_graphics.geometry()
assert geom.topLeft() == QPointF(0, 0)
self.scene.setSceneRect(geom)
geom.setHeight(self.top_axis.size().height())
self.top_axis.scene().setSceneRect(geom)
self.bottom_axis.scene().setSceneRect(geom)
def _axis_slider_changed(self, value):
self.cut_line.setValue(value)
def _dendrogram_slider_changed(self, value):
p = QPointF(value, 0)
cl_height = self.dendrogram.height_at(p)
self.set_cutoff_height(cl_height)
# Sync the cut positions between the dendrogram and the axis.
self._set_slider_value(value, self.dendrogram.size().width())
def _set_slider_value(self, value, span):
with blocked(self.cut_line):
self.cut_line.setValue(value)
self.cut_line.setRange(0, span)
with blocked(self.top_axis.line):
self.top_axis.line.setValue(value)
self.top_axis.line.setRange(0, span)
with blocked(self.bottom_axis.line):
self.bottom_axis.line.setValue(value)
self.bottom_axis.line.setRange(0, span)
def set_cutoff_height(self, height):
self.cutoff_height = height
if self.root:
self.cut_ratio = 100 * height / self.root.value.height
self.select_max_height(height)
def _set_cut_line_visible(self, visible):
self.cut_line.setVisible(visible)
self.top_axis.line.setVisible(visible)
self.bottom_axis.line.setVisible(visible)
def select_top_n(self, n):
root = self._displayed_root
if root:
clusters = top_clusters(root, n)
self.dendrogram.set_selected_clusters(clusters)
def select_max_height(self, height):
root = self._displayed_root
if root:
clusters = clusters_at_height(root, height)
self.dendrogram.set_selected_clusters(clusters)
def _selection_method_changed(self):
self._set_cut_line_visible(self.selection_method == 1)
if self.root:
self._apply_selection()
def _apply_selection(self):
if not self.root:
return
if self.selection_method == 0:
pass
elif self.selection_method == 1:
height = self.cut_ratio * self.root.value.height / 100
self.set_cutoff_height(height)
pos = self.dendrogram.pos_at_height(height)
self._set_slider_value(pos.x(), self.dendrogram.size().width())
elif self.selection_method == 2:
self.select_top_n(self.top_n)
def _selection_edited(self):
# Selection was edited by clicking on a cluster in the
# dendrogram view.
self.selection_method = 0
self._selection_method_changed()
def __init__(self, parent=None, **kwargs):
QGraphicsWidget.__init__(self, parent, **kwargs)
def __init__(self, parent=None):
super().__init__(parent)
self.matrix = None
self.items = None
self.linkmatrix = None
self.root = None
self._displayed_root = None
self.cutoff_height = 0.0
self._invalidated = False
gui.comboBox(gui.widgetBox(self.controlArea, "Linkage"),
self,
"linkage",
items=LINKAGE,
callback=self._invalidate_clustering)
box = gui.widgetBox(self.controlArea, "Annotation")
self.label_cb = gui.comboBox(box,
self,
"annotation_idx",
callback=self._update_labels)
self.label_cb.setModel(itemmodels.VariableListModel())
self.label_cb.model()[:] = ["None", "Enumeration"]
box = gui.radioButtons(self.controlArea,
self,
"pruning",
box="Pruning",
callback=self._invalidate_pruning)
grid = QGridLayout()
box.layout().addLayout(grid)
grid.addWidget(gui.appendRadioButton(box, "None", addToLayout=False),
0, 0)
self.max_depth_spin = gui.spin(box,
self,
"max_depth",
minv=1,
maxv=100,
callback=self._invalidate_pruning,
keyboardTracking=False)
grid.addWidget(
gui.appendRadioButton(box, "Max depth", addToLayout=False), 1, 0)
grid.addWidget(self.max_depth_spin, 1, 1)
box = gui.radioButtons(self.controlArea,
self,
"selection_method",
box="Selection",
callback=self._selection_method_changed)
grid = QGridLayout()
box.layout().addLayout(grid)
grid.addWidget(gui.appendRadioButton(box, "Manual", addToLayout=False),
0, 0)
grid.addWidget(
gui.appendRadioButton(box, "Height ratio", addToLayout=False), 1,
0)
self.cut_ratio_spin = gui.spin(box,
self,
"cut_ratio",
0,
100,
step=1e-1,
spinType=float,
callback=self._selection_method_changed)
self.cut_ratio_spin.setSuffix("%")
grid.addWidget(self.cut_ratio_spin, 1, 1)
grid.addWidget(gui.appendRadioButton(box, "Top N", addToLayout=False),
2, 0)
self.top_n_spin = gui.spin(box,
self,
"top_n",
1,
20,
callback=self._selection_method_changed)
grid.addWidget(self.top_n_spin, 2, 1)
box.layout().addLayout(grid)
self.controlArea.layout().addStretch()
box = gui.widgetBox(self.controlArea, "Output")
gui.checkBox(box,
self,
"append_clusters",
"Append cluster IDs",
callback=self._invalidate_output)
ibox = gui.indentedBox(box)
name_edit = gui.lineEdit(ibox, self, "cluster_name")
name_edit.editingFinished.connect(self._invalidate_output)
cb = gui.comboBox(
ibox,
self,
"cluster_role",
callback=self._invalidate_output,
items=["Attribute", "Class variable", "Meta variable"])
form = QFormLayout(fieldGrowthPolicy=QFormLayout.AllNonFixedFieldsGrow,
labelAlignment=Qt.AlignLeft,
spacing=8)
form.addRow("Name", name_edit)
form.addRow("Place", cb)
ibox.layout().addSpacing(5)
ibox.layout().addLayout(form)
ibox.layout().addSpacing(5)
cb = gui.checkBox(box, self, "autocommit", "Commit automatically")
b = gui.button(box, self, "Commit", callback=self.commit, default=True)
gui.setStopper(self, b, cb, "_invalidated", callback=self.commit)
self.scene = QGraphicsScene()
self.view = QGraphicsView(
self.scene,
horizontalScrollBarPolicy=Qt.ScrollBarAlwaysOff,
verticalScrollBarPolicy=Qt.ScrollBarAlwaysOn,
alignment=Qt.AlignLeft | Qt.AlignVCenter)
def axis_view(orientation):
ax = pg.AxisItem(orientation=orientation, maxTickLength=7)
scene = QGraphicsScene()
scene.addItem(ax)
view = QGraphicsView(
scene,
horizontalScrollBarPolicy=Qt.ScrollBarAlwaysOff,
verticalScrollBarPolicy=Qt.ScrollBarAlwaysOn,
alignment=Qt.AlignLeft | Qt.AlignVCenter)
view.setFixedHeight(ax.size().height())
ax.line = SliderLine(orientation=Qt.Horizontal,
length=ax.size().height())
scene.addItem(ax.line)
return view, ax
self.top_axis_view, self.top_axis = axis_view("top")
self.mainArea.layout().setSpacing(1)
self.mainArea.layout().addWidget(self.top_axis_view)
self.mainArea.layout().addWidget(self.view)
self.bottom_axis_view, self.bottom_axis = axis_view("bottom")
self.mainArea.layout().addWidget(self.bottom_axis_view)
self._main_graphics = QGraphicsWidget()
self._main_layout = QGraphicsLinearLayout(Qt.Horizontal)
self._main_layout.setSpacing(1)
self._main_graphics.setLayout(self._main_layout)
self.scene.addItem(self._main_graphics)
self.dendrogram = DendrogramWidget()
self.dendrogram.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.MinimumExpanding)
self.dendrogram.selectionChanged.connect(self._invalidate_output)
self.dendrogram.selectionEdited.connect(self._selection_edited)
fm = self.fontMetrics()
self.dendrogram.setContentsMargins(5,
fm.lineSpacing() / 2, 5,
fm.lineSpacing() / 2)
self.labels = GraphicsSimpleTextList()
self.labels.setSizePolicy(QSizePolicy.Preferred, QSizePolicy.Preferred)
self.labels.setAlignment(Qt.AlignLeft)
self.labels.setMaximumWidth(200)
self.labels.layout().setSpacing(0)
self._main_layout.addItem(self.dendrogram)
self._main_layout.addItem(self.labels)
self._main_layout.setAlignment(self.dendrogram,
Qt.AlignLeft | Qt.AlignVCenter)
self._main_layout.setAlignment(self.labels,
Qt.AlignLeft | Qt.AlignVCenter)
self.view.viewport().installEventFilter(self)
self.top_axis_view.viewport().installEventFilter(self)
self.bottom_axis_view.viewport().installEventFilter(self)
self._main_graphics.installEventFilter(self)
self.cut_line = SliderLine(self.dendrogram, orientation=Qt.Horizontal)
self.cut_line.valueChanged.connect(self._dendrogram_slider_changed)
self.cut_line.hide()
self.bottom_axis.line.valueChanged.connect(self._axis_slider_changed)
self.top_axis.line.valueChanged.connect(self._axis_slider_changed)
self.dendrogram.geometryChanged.connect(self._dendrogram_geom_changed)
self._set_cut_line_visible(self.selection_method == 1)
def sizeHint(self, which, constraint=QSizeF()):
if which == Qt.PreferredSize:
return self.pixmapSize()
else:
return QGraphicsWidget.sizeHint(self, which, constraint)
def __init__(self, parent):
"""Init class."""
QGraphicsWidget.__init__(self)
self.applet = parent
def resizeEvent(self, event):
width = event.newSize().width()
left, _, right, _ = self.textMargins()
self.__textItem.setTextWidth(max(width - left - right, 0))
self.__updateFrame()
QGraphicsWidget.resizeEvent(self, event)
def setGeometry(self, rect):
QGraphicsWidget.setGeometry(self, rect)
self.__textItem.setTextWidth(rect.width())
def setGeometry(self, rect):
QGraphicsWidget.setGeometry(self, rect)
def resizeEvent(self, event):
width = event.newSize().width()
left, _, right, _ = self.textMargins()
self.__textItem.setTextWidth(max(width - left - right, 0))
self.__updateFrame()
QGraphicsWidget.resizeEvent(self, event)
def sceneEventFilter(self, recv, event):
return QGraphicsWidget.sceneEventFilter(self, recv, event)
def setGeometry(self, rect):
QGraphicsWidget.setGeometry(self, rect)
self.geometryChanged.emit()
def __init__(self, parent=None, **kwargs):
QGraphicsWidget.__init__(self, parent, **kwargs)
def setGeometry(self, rect):
QGraphicsWidget.setGeometry(self, rect)
self.geometryChanged.emit()
def setClusterRotation(o, rotation):
o._clusterRotation = rotation
angle_deg = rotation * (-360. / o.rotations)
QGraphicsWidget.setRotation(o, angle_deg)
for item in o.childItems():
item.updateRotation(angle_deg)
def shape(self):
return QGraphicsWidget.shape(self.applet)
class DendrogramWidget(QGraphicsWidget):
"""A Graphics Widget displaying a dendrogram."""
class ClusterGraphicsItem(QGraphicsPathItem):
_rect = None
def shape(self):
if self._rect is not None:
p = QPainterPath()
p.addRect(self.boundingRect())
return p
else:
return super().shape()
def setRect(self, rect):
self.prepareGeometryChange()
self._rect = QRectF(rect)
def boundingRect(self):
if self._rect is not None:
return QRectF(self._rect)
else:
return super().boundingRect()
#: Orientation
Left, Top, Right, Bottom = 1, 2, 3, 4
selectionChanged = Signal()
selectionEdited = Signal()
def __init__(self, parent=None, root=None, orientation=Left):
QGraphicsWidget.__init__(self, parent)
self.orientation = orientation
self._root = None
self._highlighted_item = None
#: a list of selected items
self._selection = OrderedDict()
#: a {node: item} mapping
self._items = {}
#: container for all cluster items.
self._itemgroup = QGraphicsWidget(self)
self._itemgroup.setGeometry(self.contentsRect())
self._cluster_parent = {}
self.setContentsMargins(5, 5, 5, 5)
self.set_root(root)
def clear(self):
for item in self._items.values():
item.setParentItem(None)
if item.scene() is self.scene() and self.scene() is not None:
self.scene().removeItem(item)
for item in self._selection.values():
item.setParentItem(None)
if item.scene():
item.scene().removeItem(item)
self._root = None
self._items = {}
self._selection = OrderedDict()
self._highlighted_item = None
self._cluster_parent = {}
def set_root(self, root):
"""Set the root cluster.
:param Tree root: Root tree.
"""
self.clear()
self._root = root
if root:
pen = make_pen(Qt.blue,
width=1,
cosmetic=True,
join_style=Qt.MiterJoin)
for node in postorder(root):
item = DendrogramWidget.ClusterGraphicsItem(self._itemgroup)
item.setAcceptHoverEvents(True)
item.setPen(pen)
item.node = node
item.installSceneEventFilter(self)
for branch in node.branches:
assert branch in self._items
self._cluster_parent[branch] = node
self._items[node] = item
self.updateGeometry()
self._relayout()
self._rescale()
def item(self, node):
"""Return the DendrogramNode instance representing the cluster.
:type cluster: :class:`Tree`
"""
return self._items.get(node)
def height_at(self, point):
"""Return the cluster height at the point in widget local coordinates.
"""
if not self._root:
return 0
tpoint = self.mapToItem(self._itemgroup, point)
if self.orientation in [self.Left, self.Right]:
height = tpoint.x()
else:
height = tpoint.y()
if self.orientation in [self.Left, self.Bottom]:
base = self._root.value.height
height = base - height
return height
def pos_at_height(self, height):
"""Return a point in local coordinates for `height` (in cluster
height scale).
"""
if not self._root:
return QPointF()
if self.orientation in [self.Left, self.Bottom]:
base = self._root.value.height
height = base - height
if self.orientation in [self.Left, self.Right]:
p = QPointF(height, 0)
else:
p = QPointF(0, height)
return self.mapFromItem(self._itemgroup, p)
def _set_hover_item(self, item):
"""Set the currently highlighted item."""
if self._highlighted_item is item:
return
def branches(item):
return [self._items[ch] for ch in item.node.branches]
if self._highlighted_item:
pen = make_pen(Qt.blue, width=1, cosmetic=True)
for it in postorder(self._highlighted_item, branches):
it.setPen(pen)
self._highlighted_item = item
if item:
hpen = make_pen(Qt.blue, width=2, cosmetic=True)
for it in postorder(item, branches):
it.setPen(hpen)
def leaf_items(self):
"""Iterate over the dendrogram leaf items (:class:`QGraphicsItem`).
"""
if self._root:
return (self._items[leaf] for leaf in leaves(self._root))
else:
return iter(())
def leaf_anchors(self):
"""Iterate over the dendrogram leaf anchor points (:class:`QPointF`).
The points are in the widget local coordinates.
"""
for item in self.leaf_items():
anchor = QPointF(item.element.anchor)
yield self.mapFromItem(item, anchor)
def selected_nodes(self):
"""Return the selected clusters."""
return [item.node for item in self._selection]
def set_selected_items(self, items):
"""Set the item selection.
:param items: List of `GraphicsItems`s to select.
"""
to_remove = set(self._selection) - set(items)
to_add = set(items) - set(self._selection)
for sel in to_remove:
self._remove_selection(sel)
for sel in to_add:
self._add_selection(sel)
if to_add or to_remove:
self._re_enumerate_selections()
self.selectionChanged.emit()
def set_selected_clusters(self, clusters):
"""Set the selected clusters.
:param Tree items: List of cluster nodes to select .
"""
self.set_selected_items(list(map(self.item, clusters)))
def select_item(self, item, state):
"""Set the `item`s selection state to `select_state`
:param item: QGraphicsItem.
:param bool state: New selection state for item.
"""
if state is False and item not in self._selection or \
state == True and item in self._selection:
return # State unchanged
if item in self._selection:
if state == False:
self._remove_selection(item)
self.selectionChanged.emit()
else:
# If item is already inside another selected item,
# remove that selection
super_selection = self._selected_super_item(item)
if super_selection:
self._remove_selection(super_selection)
# Remove selections this selection will override.
sub_selections = self._selected_sub_items(item)
for sub in sub_selections:
self._remove_selection(sub)
if state:
self._add_selection(item)
self._re_enumerate_selections()
elif item in self._selection:
self._remove_selection(item)
self.selectionChanged.emit()
def _add_selection(self, item):
"""Add selection rooted at item
"""
outline = self._selection_poly(item)
selection_item = QGraphicsPolygonItem(self)
# selection_item = QGraphicsPathItem(self)
selection_item.setPos(self.contentsRect().topLeft())
# selection_item.setPen(QPen(Qt.NoPen))
selection_item.setPen(make_pen(width=1, cosmetic=True))
transform = self._itemgroup.transform()
path = transform.map(outline)
margin = 4
if item.node.is_leaf:
path = QPolygonF(path.boundingRect().adjusted(
-margin, -margin, margin, margin))
else:
pass
# ppath = QPainterPath()
# ppath.addPolygon(path)
# path = path_outline(ppath, width=margin).toFillPolygon()
selection_item.setPolygon(path)
# selection_item.setPath(path_outline(path, width=4))
selection_item.unscaled_path = outline
self._selection[item] = selection_item
item.setSelected(True)
def _remove_selection(self, item):
"""Remove selection rooted at item."""
selection_poly = self._selection[item]
selection_poly.hide()
selection_poly.setParentItem(None)
if self.scene():
self.scene().removeItem(selection_poly)
del self._selection[item]
item.setSelected(False)
self._re_enumerate_selections()
def _selected_sub_items(self, item):
"""Return all selected subclusters under item."""
def branches(item):
return [self._items[ch] for ch in item.node.branches]
res = []
for item in list(preorder(item, branches))[1:]:
if item in self._selection:
res.append(item)
return res
def _selected_super_item(self, item):
"""Return the selected super item if it exists."""
def branches(item):
return [self._items[ch] for ch in item.node.branches]
for selected_item in self._selection:
if item in set(preorder(selected_item, branches)):
return selected_item
return None
def _re_enumerate_selections(self):
"""Re enumerate the selection items and update the colors."""
# Order the clusters
items = sorted(self._selection.items(),
key=lambda item: item[0].node.value.first)
palette = colorpalette.ColorPaletteGenerator(len(items))
for i, (item, selection_item) in enumerate(items):
# delete and then reinsert to update the ordering
del self._selection[item]
self._selection[item] = selection_item
color = palette[i]
color.setAlpha(150)
selection_item.setBrush(QColor(color))
def _selection_poly(self, item):
"""Return an selection item covering the selection rooted at item.
"""
def branches(item):
return [self._items[ch] for ch in item.node.branches]
def left(item):
return [self._items[ch] for ch in item.node.branches[:1]]
def right(item):
return [self._items[ch] for ch in item.node.branches[-1:]]
allitems = list(preorder(item, left)) + list(preorder(item, right))[1:]
if len(allitems) == 1:
assert (allitems[0].node.is_leaf)
else:
allitems = [item for item in allitems if not item.node.is_leaf]
brects = [QPolygonF(item.boundingRect()) for item in allitems]
return reduce(QPolygonF.united, brects, QPolygonF())
def _update_selection_items(self):
"""Update the shapes of selection items after a scale change.
"""
transform = self._itemgroup.transform()
for _, selection in self._selection.items():
path = transform.map(selection.unscaled_path)
selection.setPolygon(path)
# selection.setPath(path)
# selection.setPath(path_outline(path, width=4))
def _relayout(self):
if not self._root:
return
self._layout = dendrogram_path(self._root, self.orientation)
for node_geom in postorder(self._layout):
node, geom = node_geom.value
item = self._items[node]
item.element = geom
item.setPath(Path_toQtPath(geom))
item.setZValue(-node.value.height)
item.setPen(QPen(Qt.blue))
r = item.boundingRect()
base = self._root.value.height
if self.orientation == Left:
r.setRight(base)
elif self.orientation == Right:
r.setLeft(0)
elif self.orientation == Top:
r.setBottom(base)
else:
r.setTop(0)
item.setRect(r)
def _rescale(self):
if self._root is None:
return
crect = self.contentsRect()
leaf_count = len(list(leaves(self._root)))
if self.orientation in [Left, Right]:
drect = QSizeF(self._root.value.height, leaf_count - 1)
else:
drect = QSizeF(self._root.value.last - 1, self._root.value.height)
transform = QTransform().scale(crect.width() / drect.width(),
crect.height() / drect.height())
self._itemgroup.setPos(crect.topLeft())
self._itemgroup.setTransform(transform)
self._selection_items = None
self._update_selection_items()
def sizeHint(self, which, constraint=QSizeF()):
fm = QFontMetrics(self.font())
spacing = fm.lineSpacing()
mleft, mtop, mright, mbottom = self.getContentsMargins()
if self._root and which == Qt.PreferredSize:
nleaves = len(
[node for node in self._items.keys() if not node.branches])
if self.orientation in [self.Left, self.Right]:
return QSizeF(250, spacing * nleaves + mleft + mright)
else:
return QSizeF(spacing * nleaves + mtop + mbottom, 250)
elif which == Qt.MinimumSize:
return QSizeF(mleft + mright + 10, mtop + mbottom + 10)
else:
return QSizeF()
def sceneEventFilter(self, obj, event):
if isinstance(obj, DendrogramWidget.ClusterGraphicsItem):
if event.type() == QEvent.GraphicsSceneHoverEnter:
self._set_hover_item(obj)
event.accept()
return True
elif event.type() == QEvent.GraphicsSceneMousePress and \
event.button() == Qt.LeftButton:
if event.modifiers() & Qt.ControlModifier:
self.select_item(obj, not obj.isSelected())
else:
self.set_selected_items([obj])
self.selectionEdited.emit()
assert self._highlighted_item is obj
event.accept()
return True
if event.type() == QEvent.GraphicsSceneHoverLeave:
self._set_hover_item(None)
return super().sceneEventFilter(obj, event)
def changeEvent(self, event):
super().changeEvent(event)
if event.type() == QEvent.FontChange:
self.updateGeometry()
def resizeEvent(self, event):
super().resizeEvent(event)
self._rescale()
def mousePressEvent(self, event):
QGraphicsWidget.mousePressEvent(self, event)
# A mouse press on an empty widget part
if event.modifiers() == Qt.NoModifier and self._selection:
self.set_selected_clusters([])