def extend_inferred_knowledge(in_files, out_file):
'''Uses the RDFClosure reasoner to create
explicit triples from the inferred knowledge
n in_files and saves the complete extensional
dataset in out_file.
Note: RDFClosure - http://www.ivan-herman.net/Misc/2008/owlrl/
'''
assert type(in_files) in [list, set]
class Options:
sources = None
text = None
owlClosure = "yes"
rdfsClosure = "yes"
owlExtras = "no"
axioms = False
daxioms = False
format = "rdfxml"
iformat = "auto"
trimming = False
options = Options()
options.sources = in_files
convert_graph(options, destination=out_file)
def extend_inferred_knowledge(in_files, out_file):
'''Uses the RDFClosure reasoner to create
explicit triples from the inferred knowledge
n in_files and saves the complete extensional
dataset in out_file.
Note: RDFClosure - http://www.ivan-herman.net/Misc/2008/owlrl/
'''
assert type(in_files) in [list, set]
class Options:
sources = None
text = None
owlClosure = "yes"
rdfsClosure = "yes"
owlExtras = "no"
axioms = False
daxioms = False
format = "rdfxml"
iformat = "auto"
trimming = False
options = Options()
options.sources = in_files
convert_graph(options, destination=out_file)
def main():
parser = OptionParser(usage="%prog [options] fname1 fname2 ...")
parser.disable_interspersed_args()
# The 'text' field is not used in the command line, but the CGI environment uses it. This means that there
# is no option to change that, but is added to the final option structure
parser.set_defaults(format=TURTLE,
owlClosure="no",
rdfsClosure="no",
owlExtras="no",
axioms="no",
daxioms="no",
iformat=AUTO,
trimming="no",
maximal="no",
text=None)
parser.add_option(
"-f",
"--file",
type="string",
dest="source",
help=
"input file; should be a .rdf or .ttl file, for RDF/XML or Turtle, respectively. If "
"missing, or if the value is '-' then standard input is used. Usage of this options is not "
"really necessary, the fname in the command lines refer to files by themselves"
)
parser.add_option(
"--owlrl",
action="store",
dest="owlClosure",
choices=["yes", "no"],
help=
"execute OWL RL closure; argument must be yes|no [default: %default]")
parser.add_option("-w",
action="store_const",
dest="owlClosure",
const="yes",
help="OWL-RL is executed; shorthand for --owlrl=yes")
parser.add_option(
"--rdfs",
action="store",
dest="rdfsClosure",
choices=["yes", "no"],
help="execute RDFS closure; argument must be yes|no [default: %default]"
)
parser.add_option("-r",
action="store_const",
dest="rdfsClosure",
const="yes",
help="RDFS is executed; shorthand for --rdfs=yes")
parser.add_option(
"--extras",
action="store",
dest="owlExtras",
choices=["yes", "no"],
help=
"additional owl features added; argument must be yes|no [default: %default]"
)
parser.add_option(
"-e",
action="store_const",
dest="owlExtras",
const="yes",
help=
"additional owl features added; shorthand for --extras=yes [default: %default]"
)
parser.add_option(
"--axioms",
action="store",
dest="axioms",
choices=["yes", "no"],
help="axiomatic triples; argument must be yes|no [default: %default]")
parser.add_option(
"-a",
action="store_const",
dest="axioms",
const="yes",
help=
"add axiomatic triples; shorthand for --axioms=yes [default: %default]"
)
parser.add_option(
"--daxioms",
action="store",
dest="daxioms",
choices=["yes", "no"],
help=
"datatype axiomatic triples; argument must be true|false [default: %default]"
)
parser.add_option(
"-d",
action="store_const",
dest="daxioms",
const="yes",
help=
"add axiomatic triples; shorthand for --daxioms=yes [default: %default]"
)
parser.add_option(
"--trimming",
action="store",
dest="trimming",
choices=["yes", "no"],
help=
"trim the output of OWL 2 RL and extension; 'yes' is ineffective unless --extras=yes "
"[default: %default]")
parser.add_option(
"-m",
"--maximal",
action="store_const",
dest="maximal",
const="yes",
help=
"maximal possibilities switched on: RDFS, OWL with extensions, and with trimming"
)
parser.add_option(
"-t",
action="store_const",
dest="trimming",
const="yes",
help=
"trim the output of OWL 2 RL and extension; shorthand for --trimming=yes "
"[default: %default]")
parser.add_option(
"-o",
"-s",
"--serialization",
"--syntax",
action="store",
dest="format",
choices=[TURTLE, JSON, RDFXML],
help=
"output format; argument must be turtle|json|xml [default: %default]")
parser.add_option(
"-i",
"--input_syntax",
action="store",
dest="iformat",
choices=[AUTO, TURTLE, JSON, RDFA, RDFXML],
help=
"format of input; argument must be auto|turtle|xml|rdfa|json [default: %default]; auto "
"means that file suffix defines the format. This flag is valid for all input files."
)
(options, args) = parser.parse_args()
if options.source is None:
options.sources = []
else:
options.sources = [options.source]
if len(args) > 0:
options.sources += args
if len(options.sources) == 0:
# the default mechanism, ie, to use standard input
options.sources = ["-"]
if options.maximal == "yes":
options.trimming = "yes"
options.owlClosure = "yes"
options.owlExtras = "yes"
print(convert_graph(options))
def main() :
parser = OptionParser(usage="%prog [options] fname1 fname2 ...")
parser.disable_interspersed_args()
# The 'text' field is not used in the command line, but the CGI environment uses it. This means that there
# is no option to change that, but is added to the final option structure
parser.set_defaults(format=TURTLE, owlClosure="yes", rdfsClosure="no", owlExtras="no", axioms="no", daxioms="no", iformat=AUTO, trimming="no", text=None)
parser.add_option("-f", "--file", type="string", dest="source",
help="input file; should be a .rdf or .ttl file, for RDF/XML or Turtle, respectively. If missing, or if the value is '-' then standard input is used. Usage of this options is not really necessary, the fname in the command lines refer to files by themselves")
parser.add_option("--owlrl", action="store", dest="owlClosure", choices=["yes","no"],
help="execute OWL RL closure; argument must be yes|no [default: %default]")
parser.add_option("-w", action="store_const", dest="owlClosure", const="yes",
help="OWL-RL is executed; shorthand for --owlrl=yes")
parser.add_option("--rdfs", action="store", dest="rdfsClosure", choices=["yes","no"],
help="execute RDFS closure; argument must be yes|no [default: %default]")
parser.add_option("-r", action="store_const", dest="rdfsClosure", const="yes",
help="RDFS is executed; shorthand for --rdfs=yes")
parser.add_option("--extras", action="store", dest="owlExtras", choices=["yes","no"],
help="additional owl features added; argument must be yes|no [default: %default]")
parser.add_option("-e", action="store_const", dest="owlExtras", const="yes",
help="additional owl features added; shorthand for --extras=yes [default: %default]")
parser.add_option("--axioms", action="store", dest="axioms", choices=["yes","no"],
help="axiomatic triples; argument must be yes|no [default: %default]")
parser.add_option("-a", action="store_const", dest="axioms", const="yes",
help="add axiomatic triples; shorthand for --axioms=yes [default: %default]")
parser.add_option("--daxioms", action="store", dest="daxioms", choices=["yes","no"],
help="datatype axiomatic triples; argument must be true|false [default: %default]")
parser.add_option("-d", action="store_const", dest="daxioms", const="yes",
help="add axiomatic triples; shorthand for --daxioms=yes [default: %default]")
parser.add_option("--trimming", action="store", dest="trimming", choices=["yes","no"],
help="trim the output of OWL 2 RL and extension; 'yes' is ineffective unless --extras=yes [default: %default]")
parser.add_option("-t", action="store_const", dest="trimming", const="yes",
help="trim the output of OWL 2 RL and extension; shorthand for --trimming=yes [default: %default]")
parser.add_option("-o", "-s", "--serialization", "--syntax", action="store", dest="format", choices=[TURTLE,JSON,RDFXML],
help="output format; argument must be turtle|json|xml [default: %default]")
parser.add_option("-i", "--input_syntax", action="store", dest="iformat", choices=[AUTO,TURTLE,RDFXML],
help="format of intput; argument must be auto|turtle|xml [default: %default]; auto means that file suffix defines the format. This flag is valid for all input files.")
(options,args) = parser.parse_args()
if options.source == None :
options.sources = []
else :
options.sources = [options.source]
if len(args) > 0 :
options.sources += args
if len(options.sources) == 0 :
# the default mechanism, ie, to use standard input
options.sources = ["-"]
print convert_graph(options)
print('<dt>Axiomatic triples added:</dt><dd>%s</dd>' % self.axioms)
print('<dt>Datatype Axiomatic triples added:</dt><dd>%s</dd>' %
self.daxioms)
if self.text is not None:
print('<dt>Turtle code added to the graph:</dt>')
print('<dl>')
if self.text is not None:
print(cgi.escape(self.text).replace('\n', '<br/>'))
# ---------------------------------------------------------------------------------------------------------------------
options = Options(form)
try:
retval = convert_graph(options)
if options.format == TURTLE:
print('Content-Type: text/turtle; charset=utf-8')
else:
print('Content-Type: application/rdf+xml; charset=utf-8')
print()
print(retval)
except:
(typ, value, traceback) = sys.exc_info()
print('Content-type: text/html; charset=utf-8')
print('Status: 400 Invalid Input')
print()
print("<html>")
print("<head>")
print("<title>Error in RDF Closure processing</title>")
print("</head><body>")
print '<dt>Output format:</dt><dd>%s</dd>' % self.format
print '<dt>OWL 2 RL Processing:</dt><dd>%s</dd>' % self.owlClosure
print '<dt>RDFS Processing:</dt><dd>%s</dd>' % self.rdfsClosure
print '<dt>Extra OWL Processing:</dt><dd>%s</dd>' % self.owlExtras
print '<dt>Axiomatic triples added:</dt><dd>%s</dd>' % self.axioms
print '<dt>Datatype Axiomatic triples added:</dt><dd>%s</dd>' % self.daxioms
if self.text != None: print '<dt>Turtle code added to the graph:</dt>'
print '<dl>'
if self.text != None :
print cgi.escape(self.text).replace('\n','<br/>')
##-----------------------------------------------------------------------------------------------------------------------------------
options = Options(form)
try :
retval = convert_graph(options)
if options.format == TURTLE :
print 'Content-Type: text/turtle; charset=utf-8'
else :
print 'Content-Type: application/rdf+xml; charset=utf-8'
print
print retval
except :
(type,value,traceback) = sys.exc_info()
print 'Content-type: text/html; charset=utf-8'
print 'Status: 400 Invalid Input'
print
print "<html>"
print "<head>"
print "<title>Error in RDF Closure processing</title>"
print "</head><body>"
