def test_4_genbank_with_cnj(self):
sys.argv = ['', "--project", self.projectDir, "--email", "*****@*****.**", "-S", "ConstrainedNJ", "--database", "GenBank", self.queryFileName]
ConsoleScripts.sap()
def test_2_dependencies(self):
sys.argv = ['', '--installdependencies']
ConsoleScripts.sap()
def test_3_native_with_barcoder(self):
sys.argv = ['', "-d", self.projectDir, "--email", "*****@*****.**", "-S", "Barcoder", "--database", self.databaseFileName, self.queryFileName]
ConsoleScripts.sap()
def test_1_dependencies(self):
sys.argv = ['', '--compile', 'COI[Gene Name] AND Aves[ORGN]', '--database', self.databaseFileName]
ConsoleScripts.sap()