def test_cmd_with_working_directory_replacement(self):
cmd = "ls {WORKING_DIR}"
expected = cmd.format(WORKING_DIR=self.properties['working_directory'])
with mock.patch.object(Singularity, 'CMD', cmd):
s = Singularity(None, None)
result = s.make_task_command()
self.assertEqual(result, expected)
def test_cmd_with_unfulfilled_args_option(self):
cmd_kwargs = ["optiona", 'optionb']
cmd = "command {ARGS}"
expected = cmd.format(ARGS='')
with mock.patch.object(Singularity, 'CMD', cmd), \
mock.patch.object(Singularity, 'CMD_KWARGS', cmd_kwargs):
s = Singularity(None, None)
result = s.make_task_command()
self.assertEqual(result, expected)
def test_cmd_with_multiple_fulfilled_args_option(self):
cmd_kwargs = ["optiona", 'optionb']
self.params['optiona'] = 'valuea'
self.params['optionb'] = 'valueb'
cmd = "command {ARGS}"
expected = cmd.format(ARGS='--optiona valuea --optionb valueb')
with mock.patch.object(Singularity, 'CMD', cmd), \
mock.patch.object(Singularity, 'CMD_KWARGS', cmd_kwargs):
s = Singularity(None, None)
result = s.make_task_command()
self.assertEqual(result, expected)
def test_cmd_with_no_replacements(self):
cmd = "echo $PATH"
with mock.patch.object(Singularity, 'CMD', cmd):
s = Singularity(None, None)
result = s.make_task_command()
self.assertEqual(result, cmd)