def test_sub(self):
stringseq = 'NM_015120.4:c.34C>T'
hgvsseq = self.hp.parse_hgvs_variant(stringseq)
output = utils.hgvs_dup2indel(hgvsseq)
self.assertIsInstance(output, str)
self.assertEqual(output, 'NM_015120.4:c.34_34delCinsCC')
def test_dup_pair(self):
stringseq = 'NM_015120.4:c.34dupGA'
hgvsseq = self.hp.parse_hgvs_variant(stringseq)
output = utils.hgvs_dup2indel(hgvsseq)
self.assertIsInstance(output, str)
self.assertEqual(output, 'NM_015120.4:c.34_34delGAinsGAGA')
def test_empty(self):
with self.assertRaises(AttributeError):
utils.hgvs_dup2indel('')