apply(DownloadSaveDir_5.inputPortByName['url'].configure, (),
{'defaultValue': None})
DownloadSaveDir_5.inputPortByName['url'].rebindWidget()
DownloadSaveDir_5.inputPortByName['url'].widget.set(r"", run=False)
DownloadSaveDir_5.inputPortByName['url'].unbindWidget()
apply(DownloadSaveDir_5.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DownloadSaveDirNode named DownloadSaveDir in network masterNet"
print_exc()
DownloadSaveDir_5 = None
try:
## saving node Output Directory Browser ##
from Vision.StandardNodes import DirBrowserNE
Output_Directory_Browser_6 = DirBrowserNE(constrkw={},
name='Output Directory Browser',
library=stdlib)
masterNet.addNode(Output_Directory_Browser_6, 456, 245)
Output_Directory_Browser_6.inputPortByName['directory'].widget.set(
r"AutoDockSL_0.1_output", run=False)
apply(Output_Directory_Browser_6.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DirBrowserNE named Output Directory Browser in network masterNet"
print_exc()
Output_Directory_Browser_6 = None
try:
## saving node GetMainURLFromList ##
from WebServices.VisionInterface.WSNodes import GetMainURLFromListNode
GetMainURLFromList_7 = GetMainURLFromListNode(constrkw={},
name='GetMainURLFromList',
try:
## saving node RMSD ##
from Vision.StandardNodes import EntryNE
RMSD_9 = EntryNE(constrkw={}, name='RMSD', library=stdlib)
masterNet.addNode(RMSD_9,772,46)
RMSD_9.inputPortByName['entry'].widget.set(r"0.08", run=False)
apply(RMSD_9.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore EntryNE named RMSD in network masterNet"
print_exc()
RMSD_9=None
try:
## saving node OutputDirectory ##
from Vision.StandardNodes import DirBrowserNE
OutputDirectory_10 = DirBrowserNE(constrkw={}, name='OutputDirectory', library=stdlib)
masterNet.addNode(OutputDirectory_10,1025,38)
OutputDirectory_10.inputPortByName['directory'].widget.set(r"GROMOSClustering_0.1_output", run=False)
apply(OutputDirectory_10.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DirBrowserNE named OutputDirectory in network masterNet"
print_exc()
OutputDirectory_10=None
try:
## saving node DPFTemplateBrowser ##
from Adt.Input.DPFTemplateBrowser import DPFTemplateBrowser
DPFTemplateBrowser_11 = DPFTemplateBrowser(constrkw={}, name='DPFTemplateBrowser', library=Adt)
masterNet.addNode(DPFTemplateBrowser_11,633,265)
DPFTemplateBrowser_11.inputPortByName['dpf_template_file'].widget.set(r"GROMOSClustering_0.1_input/2HTY_A.dpf", run=False)
apply(DPFTemplateBrowser_11.configure, (), {'paramPanelImmediate': 1})
from Pmv.VisionInterface.PmvNodes import pmvlib
from Vision.StandardNodes import stdlib
try:
masterNet
except (NameError, AttributeError): # we run the network outside Vision
from NetworkEditor.net import Network
masterNet = Network()
masterNet.getEditor().addLibraryInstance(pmvlib,"Pmv.VisionInterface.PmvNodes", "pmvlib")
masterNet.getEditor().addLibraryInstance(stdlib,"Vision.StandardNodes", "stdlib")
try:
## saving node AutoDock VS Result Directory ##
from Vision.StandardNodes import DirBrowserNE
AutoDock_VS_Result_Directory_28 = DirBrowserNE(constrkw={}, name='AutoDock VS Result Directory', library=stdlib)
masterNet.addNode(AutoDock_VS_Result_Directory_28,47,27)
AutoDock_VS_Result_Directory_28.inputPortByName['directory'].widget.set(r"visualization_0.1.1_input", run=False)
apply(AutoDock_VS_Result_Directory_28.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DirBrowserNE named AutoDock VS Result Directory in network masterNet"
print_exc()
AutoDock_VS_Result_Directory_28=None
try:
## saving node GetReceptors ##
from Vision.StandardNodes import Generic
GetReceptors_29 = Generic(constrkw={}, name='GetReceptors', library=stdlib)
masterNet.addNode(GetReceptors_29,47,123)
apply(GetReceptors_29.addInputPort, (), {'singleConnection': True, 'name': 'dir', 'cast': True, 'datatype': 'string', 'defaultValue': None, 'required': True, 'height': 8, 'width': 12, 'shape': 'oval', 'color': 'white', 'originalDatatype': 'None'})
apply(GetReceptors_29.addOutputPort, (), {'name': 'receptors', 'datatype': 'list', 'height': 12, 'width': 12, 'shape': 'oval', 'color': 'cyan'})
masterNet.getEditor().addLibraryInstance(Adt,"AutoDockTools.VisionInterface.Adt", "Adt")
masterNet.getEditor().addLibraryInstance(wslib,"WebServices.VisionInterface.WSNodes", "wslib")
masterNet.getEditor().addLibraryInstance(stdlib,"Vision.StandardNodes", "stdlib")
from WebServices.VisionInterface.WSNodes import addOpalServerAsCategory
try:
addOpalServerAsCategory("http://kryptonite.nbcr.net/opal2", replace=False)
except:
pass
try:
## saving node Directory_Containing_Input_PDB_Files ##
from Vision.StandardNodes import DirBrowserNE
Directory_Containing_Input_PDB_Files_0 = DirBrowserNE(constrkw={}, name='Directory_Containing_Input_PDB_Files', library=stdlib)
masterNet.addNode(Directory_Containing_Input_PDB_Files_0,45,40)
Directory_Containing_Input_PDB_Files_0.inputPortByName['directory'].widget.set(r"TrajQRClustering_0.1_input", run=False)
apply(Directory_Containing_Input_PDB_Files_0.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DirBrowserNE named Directory_Containing_Input_PDB_Files in network masterNet"
print_exc()
Directory_Containing_Input_PDB_Files_0=None
try:
## saving node RMSD ##
from Vision.StandardNodes import EntryNE
RMSD_1 = EntryNE(constrkw={}, name='RMSD', library=stdlib)
masterNet.addNode(RMSD_1,379,44)
RMSD_1.inputPortByName['entry'].widget.set(r"0.5", run=False)
apply(RMSD_1.configure, (), {'paramPanelImmediate': 1})
LocalLigandDirectory_42.outputPorts[1].configure(datatype='string')
## configure MacroNode output ports
LocalLigandDirectory_42.shrink()
apply(LocalLigandDirectory_42.configure, (), {
'paramPanelImmediate': 1,
'expanded': False
})
except:
print "WARNING: failed to restore LocalLigandDirectory named LocalLigandDirectory in network masterNet"
print_exc()
LocalLigandDirectory_42 = None
try:
## saving node Local Ligand Directory Browser ##
from Vision.StandardNodes import DirBrowserNE
Local_Ligand_Directory_Browser_52 = DirBrowserNE(
constrkw={}, name='Local Ligand Directory Browser', library=stdlib)
masterNet.addNode(Local_Ligand_Directory_Browser_52, 704, 28)
Local_Ligand_Directory_Browser_52.inputPortByName['directory'].widget.set(
r"AutoDockVSlocal_0.1_input/ligands", run=False)
apply(Local_Ligand_Directory_Browser_52.configure, (),
{'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DirBrowserNE named Local Ligand Directory Browser in network masterNet"
print_exc()
Local_Ligand_Directory_Browser_52 = None
try:
## saving node Output Directory Browser ##
from Vision.StandardNodes import DirBrowserNE
Output_Directory_Browser_53 = DirBrowserNE(constrkw={},
name='Output Directory Browser',
apply(DownloadSaveDir_26.inputPortByName['url'].configure, (),
{'defaultValue': None})
DownloadSaveDir_26.inputPortByName['url'].rebindWidget()
DownloadSaveDir_26.inputPortByName['url'].widget.set(r"", run=False)
DownloadSaveDir_26.inputPortByName['url'].unbindWidget()
apply(DownloadSaveDir_26.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DownloadSaveDirNode named DownloadSaveDir in network masterNet"
print_exc()
DownloadSaveDir_26 = None
try:
## saving node Output_Directory ##
from Vision.StandardNodes import DirBrowserNE
Output_Directory_27 = DirBrowserNE(constrkw={},
name='Output_Directory',
library=stdlib)
masterNet.addNode(Output_Directory_27, 495, 256)
Output_Directory_27.inputPortByName['directory'].widget.set(
r"VinaVSlocal_0.1_output", run=False)
apply(Output_Directory_27.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DirBrowserNE named Output_Directory in network masterNet"
print_exc()
Output_Directory_27 = None
try:
## saving node LocalLigandDirectory ##
from Adt.Input.LocalLigandDirectory import LocalLigandDirectory
LocalLigandDirectory_28 = LocalLigandDirectory(constrkw={},
name='LocalLigandDirectory',
"""
GetOrdering_88.configure(function=code)
apply(GetOrdering_88.configure, (), {
'paramPanelImmediate': 1,
'expanded': False
})
except:
print "WARNING: failed to restore Generic named GetOrdering in network masterNet"
print_exc()
GetOrdering_88 = None
try:
## saving node Input Directory Browser ##
from Vision.StandardNodes import DirBrowserNE
Input_Directory_Browser_89 = DirBrowserNE(constrkw={},
name='Input Directory Browser',
library=stdlib)
masterNet.addNode(Input_Directory_Browser_89, 375, 8)
Input_Directory_Browser_89.inputPortByName['directory'].widget.set(
r"NAMDNBCR_0.1_input", run=False)
apply(Input_Directory_Browser_89.configure, (), {'paramPanelImmediate': 1})
except:
print "WARNING: failed to restore DirBrowserNE named Input Directory Browser in network masterNet"
print_exc()
Input_Directory_Browser_89 = None
try:
## saving node NumProcessors ##
from Vision.StandardNodes import EntryNE
NumProcessors_90 = EntryNE(constrkw={},
name='NumProcessors',