Beispiel #1
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 def _call_eager(self, expr: E.Apply, arguments: List[V.Base]) -> V.Base:
     ans_type = self.infer_type(expr)
     try:
         ans = self.op(arguments[0].coerce(ans_type).value, arguments[1].coerce(ans_type).value)
     except ZeroDivisionError:
         # TODO: different runtime error?
         raise Error.IncompatibleOperand(expr.arguments[1], "Division by zero") from None
     if ans_type == T.Int():
         assert isinstance(ans, int)
         return V.Int(ans)
     assert isinstance(ans, float)
     return V.Float(ans)
Beispiel #2
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 def eval(self, env: Env.Values) -> V.Int:
     ""
     return V.Int(self.value)
Beispiel #3
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 def _call_eager(self, expr: E.Apply, arguments: List[V.Base]) -> V.Base:
     arg0 = arguments[0]
     assert isinstance(arg0, V.Int)
     if arg0.value < 0:
         raise Error.EvalError(expr, "range() got negative argument")
     return V.Array(T.Array(T.Int()), [V.Int(x) for x in range(arg0.value)])
Beispiel #4
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    def __init__(self):
        # language built-ins
        self._at = _At()
        self._land = _And()
        self._lor = _Or()
        self._negate = StaticFunction(
            "_negate", [T.Boolean()], T.Boolean(), lambda x: V.Boolean(not x.value)
        )
        self._add = _AddOperator()
        self._sub = _ArithmeticOperator("-", lambda l, r: l - r)
        self._mul = _ArithmeticOperator("*", lambda l, r: l * r)
        self._div = _ArithmeticOperator("/", lambda l, r: l // r)
        self._rem = StaticFunction(
            "_rem", [T.Int(), T.Int()], T.Int(), lambda l, r: V.Int(l.value % r.value)
        )
        self._eqeq = _ComparisonOperator("==", lambda l, r: l == r)
        self._neq = _ComparisonOperator("!=", lambda l, r: l != r)
        self._lt = _ComparisonOperator("<", lambda l, r: l < r)
        self._lte = _ComparisonOperator("<=", lambda l, r: l <= r)
        self._gt = _ComparisonOperator(">", lambda l, r: l > r)
        self._gte = _ComparisonOperator(">=", lambda l, r: l >= r)

        # static stdlib functions
        for (name, argument_types, return_type, F) in [
            ("floor", [T.Float()], T.Int(), lambda v: V.Int(math.floor(v.value))),
            ("ceil", [T.Float()], T.Int(), lambda v: V.Int(math.ceil(v.value))),
            ("round", [T.Float()], T.Int(), lambda v: V.Int(round(v.value))),
            ("length", [T.Array(T.Any())], T.Int(), lambda v: V.Int(len(v.value))),
            ("sub", [T.String(), T.String(), T.String()], T.String(), _sub),
            ("basename", [T.String(), T.String(optional=True)], T.String(), _basename),
            (
                "defined",
                [T.Any(optional=True)],
                T.Boolean(),
                lambda v: V.Boolean(not isinstance(v, V.Null)),
            ),
            # context-dependent:
            ("write_lines", [T.Array(T.String())], T.File(), _notimpl),
            ("write_tsv", [T.Array(T.Array(T.String()))], T.File(), _notimpl),
            ("write_map", [T.Map((T.Any(), T.Any()))], T.File(), _notimpl),
            ("write_json", [T.Any()], T.File(), _notimpl),
            ("stdout", [], T.File(), _notimpl),
            ("stderr", [], T.File(), _notimpl),
            ("glob", [T.String()], T.Array(T.File()), _notimpl),
            ("read_int", [T.File()], T.Int(), _notimpl),
            ("read_boolean", [T.File()], T.Boolean(), _notimpl),
            ("read_string", [T.File()], T.String(), _notimpl),
            ("read_float", [T.File()], T.Float(), _notimpl),
            ("read_array", [T.File()], T.Array(T.Any()), _notimpl),
            ("read_map", [T.File()], T.Map((T.Any(), T.Any())), _notimpl),
            ("read_lines", [T.File()], T.Array(T.Any()), _notimpl),
            ("read_tsv", [T.File()], T.Array(T.Array(T.String())), _notimpl),
            ("read_json", [T.File()], T.Any(), _notimpl),
        ]:
            setattr(self, name, StaticFunction(name, argument_types, return_type, F))

        # polymorphically typed stdlib functions which require specialized
        # infer_type logic
        self.range = _Range()
        self.prefix = _Prefix()
        self.size = _Size()
        self.select_first = _SelectFirst()
        self.select_all = _SelectAll()
        self.zip = _Zip()
        self.cross = _Zip()  # FIXME
        self.flatten = _Flatten()
        self.transpose = _Transpose()
Beispiel #5
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 def __call__(self, expr: E.Apply, env: Env.Values) -> V.Base:
     v = expr.arguments[0].eval(env)
     if isinstance(v, V.Null):
         return V.Int(0)
     assert isinstance(v.value, list)
     return V.Int(len(v.value))
Beispiel #6
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            arg.eval(env).coerce(ty)
            for arg, ty in zip(expr.arguments, self.argument_types)
        ]
        ans: V.Base = self.F(*argument_values)
        return ans.coerce(self.return_type)


def _notimpl(one: Any = None, two: Any = None) -> None:
    exec("raise NotImplementedError()")


_static_functions: List[Tuple[str, List[T.Base], T.Base, Any]] = [
    ("_negate", [T.Boolean()], T.Boolean(),
     lambda x: V.Boolean(not x.value)),  # pyre-fixme
    ("_rem", [T.Int(), T.Int()], T.Int(),
     lambda l, r: V.Int(l.value % r.value)),  # pyre-fixme
    ("stdout", [], T.File(), _notimpl),
    ("basename", [T.String(), T.String(optional=True)], T.String(), _notimpl),
    # note: size() can take an empty value and probably returns 0 in that case.
    #       e.g. https://github.com/DataBiosphere/topmed-workflows/blob/31ba8a714b36ada929044f2ba3d130936e6c740e/CRAM-no-header-md5sum/md5sum/CRAM_md5sum.wdl#L39
    ("size", [T.File(optional=True),
              T.String(optional=True)], T.Float(), _notimpl),
    ("ceil", [T.Float()], T.Int(), _notimpl),
    ("round", [T.Float()], T.Int(), _notimpl),
    ("glob", [T.String()], T.Array(T.File()), _notimpl),
    ("read_int", [T.String()], T.Int(), _notimpl),
    ("read_boolean", [T.String()], T.Boolean(), _notimpl),
    ("read_string", [T.String()], T.String(), _notimpl),
    ("read_float", [T.String()], T.Float(), _notimpl),
    ("read_array", [T.String()], T.Array(None), _notimpl),
    ("read_map", [T.String()], T.Map(None), _notimpl),