def storeResultsInISPyB(self, _strSubject, _strMessage):
strSubject = _strSubject
strMessage = _strMessage
xsDataResultCharacterisation = self.edPluginControlInterface.getDataOutput(
).getResultCharacterisation()
self.xsDataResultMXCuBE.setCharacterisationResult(
xsDataResultCharacterisation)
xsDataResultControlISPyB = self.edPluginControlInterface.getDataOutput(
).getResultControlISPyB()
if xsDataResultControlISPyB != None:
self.xsDataResultMXCuBE.setScreeningId(
xsDataResultControlISPyB.getScreeningId())
if xsDataResultCharacterisation != None:
self.xsDataResultMXCuBE.characterisationResult = xsDataResultCharacterisation
strPathCharacterisationResult = os.path.join(
self.getWorkingDirectory(), "CharacterisationResult.xml")
xsDataResultCharacterisation.exportToFile(
strPathCharacterisationResult)
self.xsDataResultMXCuBE.setListOfOutputFiles(
XSDataString(strPathCharacterisationResult))
# For the moment, create "DNA" style output directory
strPathToDNAFileDirectory = self.createDNAFileDirectoryPath(
xsDataResultCharacterisation)
xsDataDictionaryLogFile = None
if not EDUtilsPath.isALBA:
if (self.createDNAFileDirectory(strPathToDNAFileDirectory)):
xsDataDictionaryLogFile = self.createOutputFileDictionary(
xsDataResultCharacterisation,
strPathToDNAFileDirectory)
strPyArchPathToDNAFileDirectory = EDHandlerESRFPyarchv1_0.createPyarchFilePath(
strPathToDNAFileDirectory)
if (self.createDNAFileDirectory(strPyArchPathToDNAFileDirectory)):
xsDataDictionaryLogFile = self.createOutputFileDictionary(
xsDataResultCharacterisation,
strPyArchPathToDNAFileDirectory)
self.xsDataResultMXCuBE.setOutputFileDictionary(
xsDataDictionaryLogFile)
if xsDataResultCharacterisation.getStatusMessage():
strMessage += "\n\n"
strMessage += xsDataResultCharacterisation.getStatusMessage(
).getValue()
if xsDataResultCharacterisation.getShortSummary():
strMessage += "\n\n"
strMessage += xsDataResultCharacterisation.getShortSummary(
).getValue()
self.sendEmail(strSubject, strMessage)
# Fix for bug EDNA-55 : If burning strategy EDNA2html shouldn't be run
bRunExecOutputHTML = False
xsDataInputMXCuBE = self.getDataInput()
xsDataDiffractionPlan = xsDataInputMXCuBE.getDiffractionPlan()
if xsDataDiffractionPlan.getStrategyOption() is not None:
strStrategyOption = xsDataDiffractionPlan.getStrategyOption(
).getValue()
if strStrategyOption.find("-DamPar") != -1:
bRunExecOutputHTML = False
if (self.edPluginExecOutputHTML
is not None) and bRunExecOutputHTML:
self.edPluginExecOutputHTML.setDataInput(
XSDataFile(XSDataString(strPathToDNAFileDirectory)),
"dnaFileDirectory")
self.edPluginExecOutputHTML.execute()
# Fix for bug MXSUP-251: Put the BEST .par file in the EDNA characterisation root directory
xsDataIntegrationResult = xsDataResultCharacterisation.getIntegrationResult(
)
if xsDataIntegrationResult:
listXSDataIntegrationSubWedgeResult = xsDataIntegrationResult.getIntegrationSubWedgeResult(
)
for xsDataIntegrationSubWedgeResult in listXSDataIntegrationSubWedgeResult:
if xsDataIntegrationSubWedgeResult.getBestfilePar(
) is not None:
strBestfilePar = xsDataIntegrationSubWedgeResult.getBestfilePar(
).getValue()
# Put the file one directory above the mxCuBE v1.3 plugin working directory:
strDir = os.path.dirname(self.getWorkingDirectory())
strPath = os.path.join(strDir, "bestfile.par")
EDUtilsFile.writeFile(strPath, strBestfilePar)
break
# Execute plugin which creates a simple HTML page
self.executeSimpleHTML(xsDataResultCharacterisation)
# Upload the best wilson plot path to ISPyB
strBestWilsonPlotPath = EDHandlerXSDataISPyBv1_4.getBestWilsonPlotPath(
xsDataResultCharacterisation)
if strBestWilsonPlotPath is not None and strPyArchPathToDNAFileDirectory is not None:
# Copy wilson path to Pyarch
strBestWilsonPlotPyarchPath = os.path.join(
strPyArchPathToDNAFileDirectory,
os.path.basename(strBestWilsonPlotPath))
if not os.path.exists(strBestWilsonPlotPyarchPath):
if not os.path.exists(
os.path.dirname(strBestWilsonPlotPyarchPath)):
os.makedirs(
os.path.dirname(strBestWilsonPlotPyarchPath), 755)
shutil.copy(strBestWilsonPlotPath,
strBestWilsonPlotPyarchPath)
self.DEBUG("Best wilson pyarch path: %s " %
strBestWilsonPlotPyarchPath)
if self.edPluginControlInterface.dataOutput.resultControlISPyB is not None:
xsDataInputISPyBSetBestWilsonPlotPath = XSDataInputISPyBSetBestWilsonPlotPath(
)
xsDataInputISPyBSetBestWilsonPlotPath.dataCollectionId = self.edPluginControlInterface.dataOutput.resultControlISPyB.dataCollectionId
xsDataInputISPyBSetBestWilsonPlotPath.bestWilsonPlotPath = XSDataString(
strBestWilsonPlotPyarchPath)
edPluginSetBestWilsonPlotPath = self.loadPlugin(
"EDPluginISPyBSetBestWilsonPlotPathv1_4",
"ISPyBSetBestWilsonPlotPath")
edPluginSetBestWilsonPlotPath.dataInput = xsDataInputISPyBSetBestWilsonPlotPath
edPluginSetBestWilsonPlotPath.executeSynchronous()
