def doSuccessIndexingMOSFLM(self, _edPlugin=None):
self.DEBUG("EDPluginControlGridScreeningv1_0.doSuccessIndexingMOSFLM")
self.retrieveSuccessMessages(
_edPlugin,
"EDPluginControlGridScreeningv1_0.doIntegrationToStrategyTransition"
)
xsDataMOSFLMIndexingOutput = self.edPluginMOSFLMIndexing.getDataOutput(
)
xsDataExperimentalConditionRefined = None
if self.hasDataInput("refinedExperimentalCondition"):
xsDataExperimentalConditionRefined = self.getDataInput(
"refinedExperimentalCondition")[0]
else:
# Use the experimental condition from the xsDataCollection
xsDataExperimentalConditionRefined = self.xsDataCollection.getSubWedge(
)[0].getExperimentalCondition()
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
self.xsDataIndexingResult = EDHandlerXSDataMOSFLMv10.generateXSDataIndexingResult(
xsDataMOSFLMIndexingOutput, xsDataExperimentalConditionRefined)
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self.xsDataCollection)
xsDataIntegrationInput.setExperimentalConditionRefined(
self.xsDataIndexingResult.getSelectedSolution(
).getExperimentalConditionRefined())
xsDataIntegrationInput.setSelectedIndexingSolution(
self.xsDataIndexingResult.getSelectedSolution())
self.edPluginControlIntegration.connectSUCCESS(
self.doSuccessIntegration)
self.edPluginControlIntegration.connectFAILURE(
self.doFailureIntegration)
self.edPluginControlIntegration.setDataInput(xsDataIntegrationInput)
self.executePluginSynchronous(self.edPluginControlIntegration)
def indexingToIntegration(self, _edPlugin=None):
# Run Kappa if configured
if self._runKappa:
xsDataInputControlKappa = XSDataInputControlKappa()
xsDataInputControlKappa.dataCollection = self._xsDataCollection
xsDataInputControlKappa.selectedSolution = self._xsDataResultCharacterisation.indexingResult.selectedSolution
self._edPluginControlKappa.dataInput = xsDataInputControlKappa
self.executePluginSynchronous(self._edPluginControlKappa)
if not self._edPluginControlKappa.isFailure():
self._xsDataResultCharacterisation.kappaReorientation = self._edPluginControlKappa.dataOutput
# Create the XDS background image
xsDataInputControlXDSGenerateBackgroundImage = XSDataInputControlXDSGenerateBackgroundImage(
)
xsDataInputControlXDSGenerateBackgroundImage.setDataCollection(
self._xsDataCollection)
self._edPluginControlXDSGenerateBackgroundImage.setDataInput(
xsDataInputControlXDSGenerateBackgroundImage)
self._edPluginControlXDSGenerateBackgroundImage.execute()
# Integrate the reference images
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(
self._xsDataResultCharacterisation.getDataCollection())
xsDataIndexingResult = self._xsDataResultCharacterisation.getIndexingResult(
)
xsDataExperimentalConditionRefinded = xsDataIndexingResult.getSelectedSolution(
).getExperimentalConditionRefined()
xsDataIntegrationInput.setExperimentalConditionRefined(
xsDataExperimentalConditionRefinded)
xsDataIntegrationInput.setSelectedIndexingSolution(
xsDataIndexingResult.getSelectedSolution())
self._edPluginControlIntegration.setDataInput(xsDataIntegrationInput)
self.executePluginSynchronous(self._edPluginControlIntegration)
def indexingToIntegration(self, _edPlugin=None):
# Integrate the reference images
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self.__xsDataResultCharacterisation.getDataCollection())
xsDataIndexingResult = self.__xsDataResultCharacterisation.getIndexingResult()
xsDataExperimentalConditionRefinded = xsDataIndexingResult.getSelectedSolution().getExperimentalConditionRefined()
xsDataIntegrationInput.setExperimentalConditionRefined(xsDataExperimentalConditionRefinded)
xsDataIntegrationInput.setSelectedIndexingSolution(xsDataIndexingResult.getSelectedSolution())
self.__edPluginControlIntegration.setDataInput(xsDataIntegrationInput)
self.__edPluginControlIntegration.executeSynchronous()
def doIndexingToIntegrationTransition(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv10.doIndexingToIntegrationTransition")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv10.doIntegrationToStrategyTransition")
xsDataIndexingResult = self.__edPluginIndexing.getDataOutput()
self.__xsDataCharacterisation.setIndexingResult(xsDataIndexingResult)
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self.__xsDataCharacterisation.getDataCollection())
xsDataIntegrationInput.setExperimentalConditionRefined(xsDataIndexingResult.getSelectedSolution().getExperimentalConditionRefined())
xsDataIntegrationInput.setSelectedIndexingSolution(xsDataIndexingResult.getSelectedSolution())
self.__edPluginIntegration.setDataInput(xsDataIntegrationInput)
self.__edPluginIntegration.executeSynchronous()
def indexingToIntegration(self, _edPlugin=None):
# Integrate the reference images
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self.__xsDataResultCharacterisation.getDataCollection())
xsDataIndexingResult = self.__xsDataResultCharacterisation.getIndexingResult()
xsDataExperimentalConditionRefinded = xsDataIndexingResult.getSelectedSolution().getExperimentalConditionRefined()
xsDataIntegrationInput.setExperimentalConditionRefined(xsDataExperimentalConditionRefinded)
xsDataIntegrationInput.setSelectedIndexingSolution(xsDataIndexingResult.getSelectedSolution())
self.__edPluginControlIntegration.setDataInput(xsDataIntegrationInput)
self.__edPluginControlIntegration.executeSynchronous()
def testSetDataInput(self):
edPluginControlIntegrationv10 = self.createPlugin()
xsPluginItemGood01 = self.getPluginConfiguration(os.path.join(self.getPluginTestsDataHome(), "XSConfiguration.xml"))
edPluginControlIntegrationv10.setConfiguration(xsPluginItemGood01)
edPluginControlIntegrationv10.configure()
xmlInputReference = self.readAndParseFile(self.strReferenceInputFile)
from XSDataMXv1 import XSDataIntegrationInput
xsDataIntegrationInputReference = XSDataIntegrationInput.parseString(xmlInputReference)
edPluginControlIntegrationv10.setDataInput(xmlInputReference)
xsDataIntegrationv10Input = edPluginControlIntegrationv10.getDataInput()
EDAssert.equal(xsDataIntegrationInputReference.marshal(), xsDataIntegrationv10Input.marshal())
self.cleanUp(edPluginControlIntegrationv10)
def doIndexingToIntegrationTransition(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv1_1.doIndexingToIntegrationTransition")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv1_1.doIntegrationToStrategyTransition")
xsDataIndexingResult = self.__edPluginIndexing.getDataOutput()
self.__xsDataResultCharacterisation.setIndexingResult(xsDataIndexingResult)
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self.__xsDataResultCharacterisation.getDataCollection())
xsDataIntegrationInput.setExperimentalConditionRefined(xsDataIndexingResult.getSelectedSolution().getExperimentalConditionRefined())
xsDataIntegrationInput.setSelectedIndexingSolution(xsDataIndexingResult.getSelectedSolution())
self.__edPluginIntegration.setDataInput(xsDataIntegrationInput)
self.__edPluginIntegration.executeSynchronous()
def preProcess(self, _edObject=None):
"""
Gets the Configuration Parameters, if found, overrides default parameters
"""
EDPluginControl.preProcess(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.preProcess...")
xsDataIntegrationInput = self.getDataInput()
xsDataSelectedIndexingSolution = xsDataIntegrationInput.getSelectedIndexingSolution()
self.__xsDataExperimentalConditionRefined = xsDataIntegrationInput.getExperimentalConditionRefined()
# To be changed (see bug #40)
if (self.__xsDataExperimentalConditionRefined is None):
self.__xsDataExperimentalConditionRefined = xsDataSelectedIndexingSolution.getExperimentalConditionRefined()
xsDataCollection = xsDataIntegrationInput.getDataCollection()
xsDataSubWedgeList = xsDataCollection.getSubWedge()
self.__edPluginIntegrationList = []
iIndex = 0
for xsDataSubWedge in xsDataSubWedgeList:
iSubWedgeNumber = iIndex
if (xsDataSubWedge.getSubWedgeNumber() is not None):
# Use the incoming subwedge number if it exists
iSubWedgeNumber = xsDataSubWedge.getSubWedgeNumber().getValue()
edPluginIntegration = self.loadPlugin(self.__strPluginIntegrationName)
if (not edPluginIntegration is None):
iIndex += 1
xsDataIntegrationInputSubWedge = XSDataIntegrationInput()
xsDataIntegrationInputSubWedge.setSelectedIndexingSolution(XSDataIndexingSolutionSelected.parseString(xsDataSelectedIndexingSolution.marshal()))
xsDataIntegrationInputSubWedge.setExperimentalConditionRefined(XSDataExperimentalCondition.parseString(self.__xsDataExperimentalConditionRefined.marshal()))
xsDataCollection = XSDataCollection()
xsDataCollection.addSubWedge(xsDataSubWedge)
xsDataIntegrationInputSubWedge.setDataCollection(xsDataCollection)
try:
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMInputIntegration = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration(xsDataIntegrationInputSubWedge)
edPluginIntegration.setDataInput(xsDataMOSFLMInputIntegration)
edPluginIntegration.setBaseName("%s-%02d" % (self.__strPluginIntegrationName, iIndex))
edPluginIntegration.connectSUCCESS(self.doSuccessActionIntegration)
edPluginIntegration.connectFAILURE(self.doFailureActionIntegration)
# Here we store the sub wedge number for use in the results
self.__edPluginIntegrationList.append([iSubWedgeNumber, edPluginIntegration])
except Exception as strErrorMessage:
self.addErrorMessage(strErrorMessage)
self.ERROR(strErrorMessage)
self.setFailure()
else:
strErrorMessage = "EDPluginControlIntegrationv10.preProcess: could not load plugin %s" % self.__strPluginIntegrationName
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
def testGenerateXSDataMOSFLMInputIntegration(self):
strFilename = "XSDataIntegrationInput_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLIntegrationInput = EDUtilsTest.readAndParseFile(strPath)
from XSDataMXv1 import XSDataIntegrationInput
xsDataIntegrationInput = XSDataIntegrationInput.parseString(strXMLIntegrationInput)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMInputIntegration = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration(xsDataIntegrationInput)
strReferenceFilename = "XSDataMOSFLMInputIntegration_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath, strReferenceFilename)
strXMLIntegrationInputReference = EDUtilsTest.readAndParseFile(strReferencePath)
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
xsDataMOSFLMInputIntegrationReference = XSDataMOSFLMInputIntegration.parseString(strXMLIntegrationInputReference)
EDAssert.equal(xsDataMOSFLMInputIntegrationReference.marshal(), xsDataMOSFLMInputIntegration.marshal())
def indexingToIntegration(self, _edPlugin=None):
# Create the XDS background image
xsDataInputControlXDSGenerateBackgroundImage = XSDataInputControlXDSGenerateBackgroundImage()
xsDataInputControlXDSGenerateBackgroundImage.setDataCollection(self._xsDataCollection)
self._edPluginControlXDSGenerateBackgroundImage.setDataInput(xsDataInputControlXDSGenerateBackgroundImage)
self._edPluginControlXDSGenerateBackgroundImage.execute()
# Integrate the reference images
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self._xsDataResultCharacterisation.getDataCollection())
xsDataIndexingResult = self._xsDataResultCharacterisation.getIndexingResult()
xsDataExperimentalConditionRefinded = xsDataIndexingResult.getSelectedSolution().getExperimentalConditionRefined()
xsDataIntegrationInput.setExperimentalConditionRefined(xsDataExperimentalConditionRefinded)
xsDataIntegrationInput.setSelectedIndexingSolution(xsDataIndexingResult.getSelectedSolution())
self._edPluginControlIntegration.setDataInput(xsDataIntegrationInput)
self.executePluginSynchronous(self._edPluginControlIntegration)
def testGenerateXSDataMOSFLMInputIntegration(self):
strFilename = "XSDataIntegrationInput_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLIntegrationInput = EDUtilsTest.readAndParseFile(strPath)
from XSDataMXv1 import XSDataIntegrationInput
xsDataIntegrationInput = XSDataIntegrationInput.parseString(
strXMLIntegrationInput)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMInputIntegration = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration(
xsDataIntegrationInput)
strReferenceFilename = "XSDataMOSFLMInputIntegration_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath,
strReferenceFilename)
strXMLIntegrationInputReference = EDUtilsTest.readAndParseFile(
strReferencePath)
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
xsDataMOSFLMInputIntegrationReference = XSDataMOSFLMInputIntegration.parseString(
strXMLIntegrationInputReference)
EDAssert.equal(xsDataMOSFLMInputIntegrationReference.marshal(),
xsDataMOSFLMInputIntegration.marshal())
def indexingToIntegration(self, _edPlugin=None):
# Create the XDS background image
xsDataInputControlXDSGenerateBackgroundImage = XSDataInputControlXDSGenerateBackgroundImage(
)
xsDataInputControlXDSGenerateBackgroundImage.setDataCollection(
self._xsDataCollection)
self._edPluginControlXDSGenerateBackgroundImage.setDataInput(
xsDataInputControlXDSGenerateBackgroundImage)
self._edPluginControlXDSGenerateBackgroundImage.execute()
# Integrate the reference images
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(
self._xsDataResultCharacterisation.getDataCollection())
xsDataIndexingResult = self._xsDataResultCharacterisation.getIndexingResult(
)
xsDataExperimentalConditionRefinded = xsDataIndexingResult.getSelectedSolution(
).getExperimentalConditionRefined()
xsDataIntegrationInput.setExperimentalConditionRefined(
xsDataExperimentalConditionRefinded)
xsDataIntegrationInput.setSelectedIndexingSolution(
xsDataIndexingResult.getSelectedSolution())
self._edPluginControlIntegration.setDataInput(xsDataIntegrationInput)
self.executePluginSynchronous(self._edPluginControlIntegration)
def doSuccessIndexingMOSFLM(self, _edPlugin=None):
self.DEBUG("EDPluginControlGridScreeningv1_0.doSuccessIndexingMOSFLM")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlGridScreeningv1_0.doIntegrationToStrategyTransition")
xsDataMOSFLMIndexingOutput = self.edPluginMOSFLMIndexing.getDataOutput()
xsDataExperimentalConditionRefined = None
if self.hasDataInput("refinedExperimentalCondition"):
xsDataExperimentalConditionRefined = self.getDataInput("refinedExperimentalCondition")[0]
else:
# Use the experimental condition from the xsDataCollection
xsDataExperimentalConditionRefined = self.xsDataCollection.getSubWedge()[0].getExperimentalCondition()
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
self.xsDataIndexingResult = EDHandlerXSDataMOSFLMv10.generateXSDataIndexingResult(xsDataMOSFLMIndexingOutput, xsDataExperimentalConditionRefined)
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self.xsDataCollection)
xsDataIntegrationInput.setExperimentalConditionRefined(self.xsDataIndexingResult.getSelectedSolution().getExperimentalConditionRefined())
xsDataIntegrationInput.setSelectedIndexingSolution(self.xsDataIndexingResult.getSelectedSolution())
self.edPluginControlIntegration.connectSUCCESS(self.doSuccessIntegration)
self.edPluginControlIntegration.connectFAILURE(self.doFailureIntegration)
self.edPluginControlIntegration.setDataInput(xsDataIntegrationInput)
self.executePluginSynchronous(self.edPluginControlIntegration)
def indexingToIntegration(self, _edPlugin=None):
# Run Kappa if configured
if self._runKappa:
xsDataInputControlKappa = XSDataInputControlKappa()
xsDataInputControlKappa.dataCollection = self._xsDataCollection
xsDataInputControlKappa.selectedSolution = self._xsDataResultCharacterisation.indexingResult.selectedSolution
self._edPluginControlKappa.dataInput = xsDataInputControlKappa
self.executePluginSynchronous(self._edPluginControlKappa)
if not self._edPluginControlKappa.isFailure():
self._xsDataResultCharacterisation.kappaReorientation = self._edPluginControlKappa.dataOutput
# Create the XDS background image
xsDataInputControlXDSGenerateBackgroundImage = XSDataInputControlXDSGenerateBackgroundImage()
xsDataInputControlXDSGenerateBackgroundImage.setDataCollection(self._xsDataCollection)
self._edPluginControlXDSGenerateBackgroundImage.setDataInput(xsDataInputControlXDSGenerateBackgroundImage)
self._edPluginControlXDSGenerateBackgroundImage.execute()
# Integrate the reference images
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self._xsDataResultCharacterisation.getDataCollection())
xsDataIndexingResult = self._xsDataResultCharacterisation.getIndexingResult()
xsDataExperimentalConditionRefinded = xsDataIndexingResult.getSelectedSolution().getExperimentalConditionRefined()
xsDataIntegrationInput.setExperimentalConditionRefined(xsDataExperimentalConditionRefinded)
xsDataIntegrationInput.setSelectedIndexingSolution(xsDataIndexingResult.getSelectedSolution())
self._edPluginControlIntegration.setDataInput(xsDataIntegrationInput)
self.executePluginSynchronous(self._edPluginControlIntegration)
def preProcess(self, _edObject=None):
"""
Gets the Configuration Parameters, if found, overrides default parameters
"""
EDPluginControl.preProcess(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.preProcess...")
xsDataIntegrationInput = self.getDataInput()
xsDataSelectedIndexingSolution = xsDataIntegrationInput.getSelectedIndexingSolution(
)
self.__xsDataExperimentalConditionRefined = xsDataIntegrationInput.getExperimentalConditionRefined(
)
# To be changed (see bug #40)
if (self.__xsDataExperimentalConditionRefined is None):
self.__xsDataExperimentalConditionRefined = xsDataSelectedIndexingSolution.getExperimentalConditionRefined(
)
xsDataCollection = xsDataIntegrationInput.getDataCollection()
xsDataSubWedgeList = xsDataCollection.getSubWedge()
self.__edPluginIntegrationList = []
iIndex = 0
for xsDataSubWedge in xsDataSubWedgeList:
iSubWedgeNumber = iIndex
if (xsDataSubWedge.getSubWedgeNumber() is not None):
# Use the incoming subwedge number if it exists
iSubWedgeNumber = xsDataSubWedge.getSubWedgeNumber().getValue()
edPluginIntegration = self.loadPlugin(
self.__strPluginIntegrationName)
if (not edPluginIntegration is None):
iIndex += 1
xsDataIntegrationInputSubWedge = XSDataIntegrationInput()
xsDataIntegrationInputSubWedge.setSelectedIndexingSolution(
XSDataIndexingSolutionSelected.parseString(
xsDataSelectedIndexingSolution.marshal()))
xsDataIntegrationInputSubWedge.setExperimentalConditionRefined(
XSDataExperimentalCondition.parseString(
self.__xsDataExperimentalConditionRefined.marshal()))
xsDataCollection = XSDataCollection()
xsDataCollection.addSubWedge(xsDataSubWedge)
xsDataIntegrationInputSubWedge.setDataCollection(
xsDataCollection)
try:
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMInputIntegration = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration(
xsDataIntegrationInputSubWedge)
edPluginIntegration.setDataInput(
xsDataMOSFLMInputIntegration)
edPluginIntegration.setBaseName(
"%s-%02d" % (self.__strPluginIntegrationName, iIndex))
edPluginIntegration.connectSUCCESS(
self.doSuccessActionIntegration)
edPluginIntegration.connectFAILURE(
self.doFailureActionIntegration)
# Here we store the sub wedge number for use in the results
self.__edPluginIntegrationList.append(
[iSubWedgeNumber, edPluginIntegration])
except Exception as strErrorMessage:
self.addErrorMessage(strErrorMessage)
self.ERROR(strErrorMessage)
self.setFailure()
else:
strErrorMessage = "EDPluginControlIntegrationv10.preProcess: could not load plugin %s" % self.__strPluginIntegrationName
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()