def __init__(self, data=''):
if not isinstance(data, str):
raise ValueError, type(data) # expecting str # TODO other types
object.__init__(self)
self.data = data
self.state = self.State(data) # TODO strview or similar in the state
self.stack = []
def __get__( self, obj, type = None ):
value = None
try:
value = self.descr.__get__( obj, type )
except AttributeError:
# special case for list: allow default to work with on +=;
# unfortunately, that means that direct access also succeeds, even
# as the property wasn't set yet ... (TODO: ideas??)
if self.__default.__class__ == list:
self.descr.__set__( obj, list(self.__default) )
value = self.descr.__get__( obj, type ) # no history
else:
raise
if value is None:
value = self.descr.__get__( obj, type )
# locked configurables return copies to prevent modifications
if obj.isLocked():
import __builtin__
if __builtin__.type( value ) is dict:
from ctypes import pythonapi, py_object
from _ctypes import PyObj_FromPtr
PyDictProxy_New = pythonapi.PyDictProxy_New
PyDictProxy_New.argtypes = (py_object,)
PyDictProxy_New.rettype = py_object
value = PyObj_FromPtr( PyDictProxy_New( value ) )
elif __builtin__.type( value ) is list:
value = tuple( value ) # point being that tuple is read-only
else:
import copy
value = copy.copy( value )
return value
def __get__(self, obj, type=None):
value = None
try:
value = self.descr.__get__(obj, type)
except AttributeError:
# special case for list: allow default to work with on +=;
# unfortunately, that means that direct access also succeeds, even
# as the property wasn't set yet ... (TODO: ideas??)
if self.__default.__class__ == list:
self.descr.__set__(obj, list(self.__default))
value = self.descr.__get__(obj, type) # no history
else:
raise
if value is None:
value = self.descr.__get__(obj, type)
# locked configurables return copies to prevent modifications
if obj.isLocked():
import __builtin__
if __builtin__.type(value) is dict:
from ctypes import pythonapi, py_object
from _ctypes import PyObj_FromPtr
PyDictProxy_New = pythonapi.PyDictProxy_New
PyDictProxy_New.argtypes = (py_object, )
PyDictProxy_New.rettype = py_object
value = PyObj_FromPtr(PyDictProxy_New(value))
elif __builtin__.type(value) is list:
value = tuple(value) # point being that tuple is read-only
else:
import copy
value = copy.copy(value)
return value
def get_metadata(self):
job = self.__load_job()
# override job type
self.objectType = __builtin__.type(job).__name__
tasks = []
# get list of tasks from Tasks or Pipeline
if job.tasks is not None and len(job.tasks) > 0:
task = job.tasks[0]
if isinstance(task, list):
tasks = list([stage[0].__to_dict__() for stage in job.tasks])
elif isinstance(task, _Pipeline):
for step in task.steps:
tasks.extend(list([task_step.__to_dict__() for task_step in step]))
# weakly check if there is possible results
has_results = False
if hasattr(job, "get_results") or "results" in self.__child_views:
has_results = True
return {
"jobname": [job.name],
"tasks": tasks,
"env": job.environment.__to_dict__(),
"status": job.get_status(),
"metrics": job.get_metrics(),
"taskstatus": job._get_task_status(),
"jobtype": __builtin__.type(job).__name__,
"starttime": job._get_start_time(),
"endtime": job._get_end_time(),
"has_results": has_results,
}
def __repr__(self):
'''
Describes current function wrapper.
Examples:
>>> function_decorator = FunctionDecorator(
... FunctionDecorator.__repr__)
>>> function_decorator.class_object = FunctionDecorator
>>> repr(function_decorator) # doctest: +ELLIPSIS
'Object of "FunctionDecorator" ... "__repr__" ... (NoneType).'
>>> repr(FunctionDecorator(FunctionDecorator)) # doctest: +ELLIPSIS
'Object of "FunctionDecorator" with wrapped function "None" and...'
'''
function_name = 'None'
if self.__func__ is not None:
function_name = self.__func__.__name__
if self.class_object:
# # python3.5
# # return (
# # 'Object of "{class_name}" with class object '
# # '"{class_object}", object "{object}", wrapped function '
# # '"{wrapped_function}" and return value "{value}" '
# # '({type}).'.format(
# # class_name=self.__class__.__name__,
# # class_object=self.class_object.__name__,
# # object=builtins.repr(self.object),
# # wrapped_function=function_name,
# # value=builtins.str(self.return_value),
# # type=builtins.type(self.return_value).__name__))
# # return (
# # 'Object of "{class_name}" with wrapped function '
# # '"{wrapped_function}" and return value "{value}" '
# # '({type}).'.format(
# # class_name=self.__class__.__name__,
# # wrapped_function=function_name,
# # value=builtins.str(self.return_value),
# # type=builtins.type(self.return_value).__name__))
return (
'Object of "{class_name}" with class object '
'"{class_object}", object "{object}", wrapped function '
'"{wrapped_function}" and return value "{value}" '
'({type}).'.format(
class_name=self.__class__.__name__,
class_object=self.class_object.__name__,
object=builtins.repr(self.object),
wrapped_function=function_name,
value=convert_to_unicode(self.return_value),
type=builtins.type(self.return_value).__name__))
return (
'Object of "{class_name}" with wrapped function '
'"{wrapped_function}" and return value "{value}" '
'({type}).'.format(
class_name=self.__class__.__name__,
wrapped_function=function_name,
value=convert_to_unicode(self.return_value),
type=builtins.type(self.return_value).__name__))
def __init__(self,
dbUserName,
dbPasswd,
dbAddress,
dbPort=3306,
dbName=None,
charset='utf8',
*args,
**kwarg):
self.tab_list = {}
self.db_name = dbName
self.__type_map = db_mapper.type_map
self.__mysql_format = "mysql+pymysql://{dbUserName}:{dbPasswd}@{dbAddress}:{dbPort}/{dbName}?charset={charset}"
self.__mysql_path = self.__mysql_format.format(dbUserName=dbUserName,
dbPasswd=dbPasswd,
dbAddress=dbAddress,
dbPort=dbPort,
dbName=dbName,
charset=charset)
self.engine = create_engine(self.__mysql_path, echo=False)
self.conn = self.engine.connect()
self.metadata = MetaData(self.engine)
self.__Base = declarative_base(metadata=self.metadata)
self.__Base.metadata.reflect(self.engine)
for table_name in self.__Base.metadata.tables:
print dbName, table_name
try:
setattr(
self, table_name,
__builtin__.type(
str(table_name), (self.__Base, ),
{'__table__': self.__Base.metadata.tables[table_name]
}))
self.tab_list[table_name] = (getattr(self, table_name))
except Exception as e:
print Exception, ":", e
if 'could not assemble any primary key' in e.message:
try:
setattr(
self, table_name,
__builtin__.type(
str(table_name), (self.__Base, ), {
'__table__':
self.__Base.metadata.tables[table_name],
'__mapper_args__': {
'primary_key': [
self.__Base.metadata.
tables[table_name].c.id,
]
}
}))
self.tab_list[table_name] = (getattr(self, table_name))
print "add primary key id"
except Exception as e:
print Exception, ":", e
self.__Session = sessionmaker(bind=self.engine)
self.__session = self.__Session()
def __init__(self,
name,
value,
type=None,
propagated=None,
overridable=None,
tosubclass=None,
toinstance=None,
translatable=None):
self.name = name
self.type = type
self.propagated = propagated
self.overridable = overridable
self.tosubclass = tosubclass
self.toinstance = toinstance
self.translatable = translatable
# Determine type of value if not specified
import __builtin__
if type is None:
# Can't work out what is going on if type and value are
# both not set.
if value is None:
raise TypeError('Null qualifier "%s" must have a type' % name)
if __builtin__.type(value) == list:
# Determine type for list value
if len(value) == 0:
raise TypeError(
'Empty qualifier array "%s" must have a type' % name)
self.type = cim_types.cimtype(value[0])
else:
# Determine type for regular value
self.type = cim_types.cimtype(value)
# Don't let anyone set integer or float values. You must use
# a subclass from the cim_type module.
if __builtin__.type(value) in (int, float, long):
raise TypeError('Must use a CIM type for numeric qualifiers.')
self.value = value
def __exit__(self, exc_type, exc_value, traceback):
r""" Keep or revert parser state. """
if not isinstance(self, ParserSkeleton):
raise RuntimeError, type(self) # expecting ParserSkeleton
if not len(self.stack) > 0:
raise RuntimeError, len(self.stack) # expecting a non-empty stack
_state = self.stack.pop(-1)
if exc_type is None and exc_value is None and traceback is None:
# all ok, forget previous state
pass
else:
# has exception, revert to previous position and propagate exception
self.state = _state
def maybe(self, func, *args, **kwargs):
r""" Call ``func'' with the provided arguments.
Return ``None'' on ´´AssertionError''.
"""
if not isinstance(self, ParserSkeleton):
raise RuntimeError, type(self) # expecting ParserSkeleton
if not getattr(self, func.__name__) == func:
raise ValueError, repr(func) # must belong to self
try:
with self: # revert state on error
return func(*args, **kwargs)
except AssertionError:
return None
def __load_job_handler(self, url, handler):
m = re.match('load_job/(.*)', url)
jobname = urllib2.unquote(m.group(1).encode('utf-8')).encode('utf-8')
if jobname in self.__job_list and self.__job_list[jobname] is not None:
job = self.__job_list[jobname]
else:
job = graphlab.deploy.jobs[jobname]
self.__job_list[jobname] = job
# link this loaded job to the child view, so job loading is only needed once
self.__child_views[jobname]._set_job(job)
if not job:
handler.write({"job":None})
return
# TODO: need to clean up get job type and get status, same code in job
jobtype = __builtin__.type(job).__name__
job_status = job.get_status(_silent=True)
job_info = {}
job_info['name'] = job.name
job_info['status'] = job_status
job_info['starttime'] = str(job.get_start_time())
job_info['type'] = jobtype
job_info['filename'] = jobname # add file name
# get rest of the completed info
if job.get_status(_silent=True) == 'Completed':
job_info['endtime'] = str(job.get_end_time())
handler.write({"job": job_info})
def instance_of(type, excluded_types=(), displayname=None):
if displayname is not None:
def displayname_(cls):
return displayname
else:
def displayname_(cls):
message = 'instance of {!r}'.format(type)
if excluded_types:
message += \
' but not of {{{}}}'\
.format(', '.join(repr(type_)
for type_ in excluded_types))
return message
displayname_.__name__ = 'displayname'
displayname_ = classmethod(displayname_)
@classmethod
def _excluded_types(cls):
return excluded_types
@classmethod
def _wrapped_type(cls):
return type
classname = type.__name__ + '_Instance'
if excluded_types:
classname += '_Excluding_' + '_'.join(type_.__name__
for type_ in excluded_types)
class_attrs = {'_excluded_types': _excluded_types,
'_wrapped_type': _wrapped_type}
if displayname_ is not None:
class_attrs['displayname'] = displayname_
return __builtin__.type(classname, (InstanceOfType,), class_attrs)
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _theZ=None, _theT=None, _theC=None, _roi=None, _locked=None, _g=None, _transform=None, _vectorEffect=None, _visibility=None, _fillColor=None, _fillRule=None, _strokeColor=None, _strokeDashArray=None, _strokeDashOffset=None, _strokeLineCap=None, _strokeLineJoin=None, _strokeMiterLimit=None, _strokeWidth=None, _fontFamily=None, _fontSize=None, _fontStretch=None, _fontStyle=None, _fontVariant=None, _fontWeight=None, _cx=None, _cy=None, _textValue=None):
if __builtin__.type(self) == _M_omero.model.Point:
raise RuntimeError('omero.model.Point is an abstract class')
_M_omero.model.Shape.__init__(self, _id, _details, _loaded, _version, _theZ, _theT, _theC, _roi, _locked, _g, _transform, _vectorEffect, _visibility, _fillColor, _fillRule, _strokeColor, _strokeDashArray, _strokeDashOffset, _strokeLineCap, _strokeLineJoin, _strokeMiterLimit, _strokeWidth, _fontFamily, _fontSize, _fontStretch, _fontStyle, _fontVariant, _fontWeight)
self._cx = _cx
self._cy = _cy
self._textValue = _textValue
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _theZ=None, _theT=None, _theC=None, _roi=None, _locked=None, _g=None, _transform=None, _vectorEffect=None, _visibility=None, _fillColor=None, _fillRule=None, _strokeColor=None, _strokeDashArray=None, _strokeDashOffset=None, _strokeLineCap=None, _strokeLineJoin=None, _strokeMiterLimit=None, _strokeWidth=None, _fontFamily=None, _fontSize=None, _fontStretch=None, _fontStyle=None, _fontVariant=None, _fontWeight=None):
if __builtin__.type(self) == _M_omero.model.Shape:
raise RuntimeError('omero.model.Shape is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._version = _version
self._theZ = _theZ
self._theT = _theT
self._theC = _theC
self._roi = _roi
self._locked = _locked
self._g = _g
self._transform = _transform
self._vectorEffect = _vectorEffect
self._visibility = _visibility
self._fillColor = _fillColor
self._fillRule = _fillRule
self._strokeColor = _strokeColor
self._strokeDashArray = _strokeDashArray
self._strokeDashOffset = _strokeDashOffset
self._strokeLineCap = _strokeLineCap
self._strokeLineJoin = _strokeLineJoin
self._strokeMiterLimit = _strokeMiterLimit
self._strokeWidth = _strokeWidth
self._fontFamily = _fontFamily
self._fontSize = _fontSize
self._fontStretch = _fontStretch
self._fontStyle = _fontStyle
self._fontVariant = _fontVariant
self._fontWeight = _fontWeight
def _is_right_type(cls, given_type, expected_type):
# #
'''
Check whether a given type is expected type or given type is a \
subclass of expected type.
Fixes bug that in python a boolean is a subtype of an integer.
Examples:
>>> CheckObject._is_right_type(bool, int)
False
>>> CheckObject._is_right_type(list, tuple)
False
>>> CheckObject._is_right_type(list, list)
True
>>> from collections import Iterable
>>> CheckObject._is_right_type(list, Iterable)
True
'''
return (
given_type is expected_type or expected_type is Null or
expected_type is builtins.type(None) or
builtins.issubclass(given_type, expected_type) and not (
given_type is builtins.bool and
expected_type is builtins.int))
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _vid=None, _label=None, _creationDate=None, _action=None, _lastUpdate=None, _barcode=None, _status=None, _numberOfSlots=None, _rows=None, _columns=None, _type=None, _arrayClass=None, _assayType=None):
if __builtin__.type(self) == _M_omero.model.IlluminaArrayOfArrays:
raise RuntimeError('omero.model.IlluminaArrayOfArrays is an abstract class')
_M_omero.model.TiterPlate.__init__(self, _id, _details, _loaded, _version, _vid, _label, _creationDate, _action, _lastUpdate, _barcode, _status, _numberOfSlots, _rows, _columns)
self._type = _type
self._arrayClass = _arrayClass
self._assayType = _assayType
def typecheck(item, type, recursive=False):
print "t args:", item, type, recursive
# `type` can be for example: "Block", Block, ["list", ["Block"]], list
# `recursive=False` means don't recurse on pandoc types, but we still
# check the native Python objects, that do not typecheck in __init__.
# TODO: handle tuples properly: tuples exist as lists in the json AND
# we also store them as lists (ex: Attr) to keep the mutability.
# Only maps have "real" tuples ? Check that. Rethink the mutability ?
# Mutability matters, but the ability to infer the "natural" Python
# type from the Haskell spec also matters ... Think about Attr and Map
# together wrt the use of tuples (these are the only occurences afaict)
types = globals()
if isinstance(type, str):
root_type = type = types[type]
if isinstance(type, __builtin__.type) and not issubclass(type, PandocType):
assert type in (list, tuple, map, int, bool, unicode, float)
return isinstance(item, type) # relax for tuples.
if isinstance(type, list):
root_type = types[type[0]]
if issubclass(root_type, PandocType):
if not isinstance(item, root_type):
error = "{0} is not of type {1}"
raise TypeError(error.format(item, root_type))
root_type = __builtin__.type(item)
if recursive:
if len(list(item)) != len(root_type.args_type):
error = "invalid number of arguments, {0} instead of {1}"
raise TypeError(error.format(len(list(item)), len(root_type.args_type)))
else:
for _type, child in zip(root_type.args_type, list(item)):
typecheck(child, _type, recursive=recursive)
else:
assert root_type in (list, tuple, map)
if not isinstance(item, root_type): # relax for tuples.
error = "{0} is not of type {1}"
raise TypeError(error.format(item, root_type))
if root_type is list:
for child in list(item):
child_type = type[1][0]
typecheck(child, child_type, recursive=recursive)
elif root_type is tuple:
child_types = type[1]
if len(child_types) != len(list(item)):
error = "invalid number of arguments, {0} instead of {1}"
raise TypeError(error.format(len(child_types), len(list(item))))
else:
for _type, child in zip(child_types, list(item)):
typecheck(child, _type, recursive=recursive)
elif root_type is map:
map_as_list = list(Sequence.iter(item))
kv_type = type[1]
_type = ["list", ["tuple", kv_type]]
typecheck(map_as_list, _type, recursive=recursive)
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _globalMin=None, _globalMax=None):
if __builtin__.type(self) == _M_omero.model.StatsInfo:
raise RuntimeError('omero.model.StatsInfo is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._version = _version
self._globalMin = _globalMin
self._globalMax = _globalMax
def get(self, name, type="model"):
"""
Get an object from the pool
:param name: the object name
:param type: the type
:return: the instance
"""
if type == "*":
for type in self.classes.keys():
if name in self._pool[self.database_name][type]:
break
try:
return self._pool[self.database_name][type][name]
except KeyError:
if type == "report":
from trytond.report import Report
# Keyword argument 'type' conflicts with builtin function
cls = __builtin__.type(str(name), (Report,), {})
obj = object.__new__(cls)
obj._name = name
self.add(obj, type)
obj.__init__()
return obj
raise
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _vid=None, _label=None, _creationDate=None, _action=None, _lastUpdate=None, _barcode=None, _status=None, _flowCell=None, _slot=None, _laneUK=None):
if __builtin__.type(self) == _M_omero.model.Lane:
raise RuntimeError('omero.model.Lane is an abstract class')
_M_omero.model.Container.__init__(self, _id, _details, _loaded, _version, _vid, _label, _creationDate, _action, _lastUpdate, _barcode, _status)
self._flowCell = _flowCell
self._slot = _slot
self._laneUK = _laneUK
def get(self, section_id, default_value=_sentinel, type=None):
"""
get(section_id, [default_value], type=None)
Return the value pointed at **section_id**.
If the key does not exist, **default_value** is returned. If
*default_value* is left by default, an empty :class:`Conf` instance is
returned.
If *type* is given, the value at *section_id* must exist and be an
instance of *type*, else a :exc:`TypeError` is raised. When used in
combination with *default_value*, it is returned if there is no value
instead of the :exc:`TypeError` but the :exc:`TypeError` is still
raised when the value is not an instance of the *type*.
"""
try:
value = self[section_id]
except KeyError:
if default_value is not _sentinel:
return default_value
if type is not None:
raise TypeError(
u'The key {0} is required but does not exists'.format(
section_id))
return EmptyConf()
if type and not isinstance(value, type):
raise TypeError(
'{key} has not the required type "{required}" but is a "{actual}"'
.format(key=section_id,
required=type,
actual=__builtin__.type(value).__name__))
return value
def test_CreateAlbum(self):
log("test_CreateAlbum: Start...")
try:
log("test_CreateAlbum: Start Sign in process.")
op.launch_RT_before_running_case()
log("test_CreateAlbum: Sign in successfully.")
log("test_CreateAlbum: Create Album.")
op.create_album()
log("test_CreateAlbum: Create Album and add item to Album successfully.")
log("test_CreateAlbum: Verify the Album from CloudAPI.")
wait_for_upload_complete("test")
log("test_CreateAlbum: The Album is created successfully.")
except Exception as ex:
log("test_CreateAlbum: failed with exception: %s" % __builtin__.type(ex).__name__)
log(traceback.format_exc())
raise
except:
log("test_CreateAlbum: Unknown exception occur, Details:.")
log(traceback.format_exc())
raise
else:
log("test_CreateAlbum: ends successfully without exception occur.")
def get(self, key, default=None, type=str):
# required to restore shadowed __builtin__.type()
import __builtin__
if default is not None: _type = __builtin__.type(default)
else:_type = type
val = self.__getitem__(key)
return self.get_value(val, default, type)
def get(self, section_id, default_value=_sentinel, type=None):
"""
get(section_id, [default_value], type=None)
Return the value pointed at **section_id**.
If the key does not exist, **default_value** is returned. If
*default_value* is left by default, an empty :class:`Conf` instance is
returned.
If *type* is given, the value at *section_id* must exist and be an
instance of *type*, else a :exc:`TypeError` is raised. When used in
combination with *default_value*, it is returned if there is no value
instead of the :exc:`TypeError` but the :exc:`TypeError` is still
raised when the value is not an instance of the *type*.
"""
try:
value = self[section_id]
except KeyError:
if default_value is not _sentinel:
return default_value
if type is not None:
raise TypeError(u'The key {0} is required but does not exists'.format(section_id))
return EmptyConf()
if type and not isinstance(value, type):
raise TypeError('{key} has not the required type "{required}" but is a "{actual}"'.format(
key=section_id, required=type, actual=__builtin__.type(value).__name__))
return value
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _parent=None, _child=None):
if __builtin__.type(self) == _M_omero.model.ProjectAnnotationLink:
raise RuntimeError('omero.model.ProjectAnnotationLink is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._version = _version
self._parent = _parent
self._child = _child
def __init__(self, name, value, type = None, propagated = None,
overridable = None, tosubclass = None, toinstance = None,
translatable = None):
self.name = name
self.type = type
self.propagated = propagated
self.overridable = overridable
self.tosubclass = tosubclass
self.toinstance = toinstance
self.translatable = translatable
# Determine type of value if not specified
import __builtin__
if type is None:
# Can't work out what is going on if type and value are
# both not set.
if value is None:
raise TypeError('Null qualifier "%s" must have a type' % name)
if __builtin__.type(value) == list:
# Determine type for list value
if len(value) == 0:
raise TypeError(
'Empty qualifier array "%s" must have a type' % name)
self.type = cim_types.cimtype(value[0])
else:
# Determine type for regular value
self.type = cim_types.cimtype(value)
# Don't let anyone set integer or float values. You must use
# a subclass from the cim_type module.
if __builtin__.type(value) in (int, float, long):
raise TypeError('Must use a CIM type for numeric qualifiers.')
self.value = value
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _renderingDef=None, _xstart=None, _ystart=None, _xend=None, _yend=None):
if __builtin__.type(self) == _M_omero.model.ContrastStretchingContext:
raise RuntimeError('omero.model.ContrastStretchingContext is an abstract class')
_M_omero.model.CodomainMapContext.__init__(self, _id, _details, _loaded, _version, _renderingDef)
self._xstart = _xstart
self._ystart = _ystart
self._xend = _xend
self._yend = _yend
def __init__(self, _id=None, _details=None, _loaded=False, _entityId=None, _entityType=None, _lsid=None, _uuid=None):
if __builtin__.type(self) == _M_omero.model.ExternalInfo:
raise RuntimeError('omero.model.ExternalInfo is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._entityId = _entityId
self._entityType = _entityType
self._lsid = _lsid
self._uuid = _uuid
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _parent=None, _child=None, _owner=None):
if __builtin__.type(self) == _M_omero.model.GroupExperimenterMap:
raise RuntimeError('omero.model.GroupExperimenterMap is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._version = _version
self._parent = _parent
self._child = _child
self._owner = _owner
def __init__(self, _id=None, _details=None, _loaded=False, _entityId=None, _entityType=None, _action=None, _event=None):
if __builtin__.type(self) == _M_omero.model.EventLog:
raise RuntimeError('omero.model.EventLog is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._entityId = _entityId
self._entityType = _entityType
self._action = _action
self._event = _event
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _vid=None, _label=None, _conf=None):
if __builtin__.type(self) == _M_omero.model.ActionSetup:
raise RuntimeError('omero.model.ActionSetup is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._version = _version
self._vid = _vid
self._label = _label
self._conf = _conf
def bigendian(ptype):
'''Will convert an integer_t to bigendian form'''
if not issubclass(ptype, type):
raise error.TypeError(ptype, 'bigendian')
import __builtin__
d = dict(ptype.__dict__)
d['byteorder'] = config.byteorder.bigendian
return __builtin__.type(ptype.__name__, ptype.__bases__, d)
def littleendian(ptype):
'''Will convert an pfloat_t to littleendian form'''
import __builtin__
if not issubclass(ptype, type) or ptype is type:
raise error.TypeError(ptype, 'littleendian')
d = dict(ptype.__dict__)
d['byteorder'] = config.byteorder.littleendian
return __builtin__.type(ptype.__name__, ptype.__bases__, d)
def littleendian(ptype):
'''Will convert an pfloat_t to littleendian form'''
import __builtin__
if not issubclass(ptype, type) or ptype is type:
raise error.TypeError(ptype, 'littleendian')
d = dict(ptype.__dict__)
d['byteorder'] = config.byteorder.littleendian
return __builtin__.type(ptype.__name__, ptype.__bases__, d)
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _node=None, _uuid=None, _owner=None, _timeToIdle=None, _timeToLive=None, _started=None, _closed=None, _message=None, _defaultEventType=None, _userAgent=None, _eventsSeq=None, _eventsLoaded=False, _annotationLinksSeq=None, _annotationLinksLoaded=False, _annotationLinksCountPerOwner=None, _group=None, _itemCount=None, _active=None, _data=None):
if __builtin__.type(self) == _M_omero.model.Share:
raise RuntimeError('omero.model.Share is an abstract class')
_M_omero.model.Session.__init__(self, _id, _details, _loaded, _version, _node, _uuid, _owner, _timeToIdle, _timeToLive, _started, _closed, _message, _defaultEventType, _userAgent, _eventsSeq, _eventsLoaded, _annotationLinksSeq, _annotationLinksLoaded, _annotationLinksCountPerOwner)
self._group = _group
self._itemCount = _itemCount
self._active = _active
self._data = _data
def value(self, section, key, default=None, type=str):
# required to restore shadowed __builtin__.type()
import __builtin__
if default is not None: _type = __builtin__.type(default)
else:_type = type
val = self._config_parser.get(section, key)
return self.get_value(val, default, _type)
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _cdStart=None, _cdEnd=None, _bitResolution=None):
if __builtin__.type(self) == _M_omero.model.QuantumDef:
raise RuntimeError('omero.model.QuantumDef is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._version = _version
self._cdStart = _cdStart
self._cdEnd = _cdEnd
self._bitResolution = _bitResolution
def typecheck(item, type, recursive=False):
# `type` can be for example: "Block", Block, ["list", ["Block"]], list
# `recursive=False` means don't recurse on pandoc types, but we still
# check the native Python objects, that do not typecheck in __init__.
# TODO: handle tuples properly: tuples exist as lists in the json AND
# we also store them as lists (ex: Attr) to keep the mutability.
# Only maps have "real" tuples ? Check that. Rethink the mutability ?
# Mutability matters, but the ability to infer the "natural" Python
# type from the Haskell spec also matters ... Think about Attr and Map
# together wrt the use of tuples (these are the only occurences afaict)
types = globals()
if isinstance(type, str):
root_type = type = types[type]
if isinstance(type, __builtin__.type) and not issubclass(type, PandocType):
assert type in (list, tuple, map, int, bool, unicode, float)
return isinstance(item, type) # relax for tuples.
if isinstance(type, list):
root_type = types[type[0]]
if issubclass(root_type, PandocType):
if not isinstance(item, root_type):
error = "{0} is not of type {1}"
raise TypeError(error.format(item, root_type))
root_type = __builtin__.type(item)
if recursive:
if len(list(item)) != len(root_type.args_type):
error = "invalid number of arguments, {0} instead of {1}"
raise TypeError(error.format(len(list(item)), len(root_type.args_type)))
else:
for _type, child in zip(root_type.args_type, list(item)):
typecheck(child, _type, recursive=recursive)
else:
assert root_type in (list, tuple, map)
if not isinstance(item, root_type): # relax for tuples.
error = "{0} is not of type {1}"
raise TypeError(error.format(item, root_type))
if root_type is list:
for child in list(item):
child_type = type[1][0]
typecheck(child, child_type, recursive=recursive)
elif root_type is tuple:
child_types = type[1]
if len(child_types) != len(list(item)):
error = "invalid number of arguments, {0} instead of {1}"
raise TypeError(error.format(len(child_types), len(list(item))))
else:
for _type, child in zip(child_types, list(item)):
typecheck(child, _type, recursive=recursive)
elif root_type is map:
map_as_list = list(Sequence.iter(item))
kv_type = type[1]
_type = ["list", ["tuple", kv_type]]
typecheck(map_as_list, _type, recursive=recursive)
def list(ap='.',r=False,type='',t='',d=False,dir=False,f=False,file=False):
'''Parms:boll r recursion
str (type,t) '(d,f,a,r)'
default return all'''
# print ap
if dir:d=True
if file:f=True
if t and not type:type=t
if 'd' in type:d=True
if 'f' in type:f=True
if 'a' in type:d=True;f=True
if 'r' in type:r=True
if d or dir or f or file:pass
else:d=f=True #default return all
if py.type(ap)!=py.type('') or py.len(ap)<1:ap='.'
# if len(ap)==2 and ap.endswith(':'):ap+='/'
if not U.inMuti(ap,'/','\\',f=str.endswith):ap+='/'
# print ap
# U.repl()
########## below r is result
rls=[]
try:r3=py.list(_os.walk(ap).next())
except Exception as ew:
# print ap;raise ew
return []
if ap=='./':ap=''
# U.repl()
r3[1]=[ap+i for i in r3[1]]
r3[2]=[ap+i for i in r3[2]]
if d:rls.extend(r3[1])
#
if r:
for i in r3[1]:rls.extend(list(i,r=r,d=d,f=f))
if f:rls.extend(r3[2])
return rls
def get(self, expr="/proc/meminfo"):
"""
This process works as yangcli's GET function. A lot of information can
be got from the running netconf agent. If an xpath-based expression is
also set, the results can be filtered.
The results are not printed out in a file, it's only printed to stdout
"""
reply = self.__connection.get(filter=('xpath', expr)).data_xml
print(type(reply))
def __init__(self, _id=None, _details=None, _loaded=False, _version=None, _attenuation=None, _wavelength=None, _lightSource=None, _microbeamManipulation=None):
if __builtin__.type(self) == _M_omero.model.LightSettings:
raise RuntimeError('omero.model.LightSettings is an abstract class')
_M_omero.model.IObject.__init__(self, _id, _details, _loaded)
self._version = _version
self._attenuation = _attenuation
self._wavelength = _wavelength
self._lightSource = _lightSource
self._microbeamManipulation = _microbeamManipulation
def count(fields):
if (sumTitle!="All Mutations"):
#if (not any([x==typeValue for x in fields])):
if (__builtin__.type(typeValue) is list):
if (not any([x==fields[typeField[0]] for x in typeValue])):
return
else:
if (not fields[typeField[0]]==typeValue):
return
if subtypeField[0]!=[]:
if ((subtypeComparison=="equal") or (subtypeComparison=="greater")):
subtypeFieldValue = int(fields[subtypeField[0]])
else:
subtypeFieldValue = fields[subtypeField[0]]
if (not compare(subtypeFieldValue, subtypeValue, subtypeComparison)):
return
#if (True):
#if (type=="10"):
#if ((type!="10")&(fields[typeField]!="N")) {
# print lnum, type, subtype, subtypeColumn, subtypeField[0]
# typeField, subtypeField
#}
if (not variants[0].has_key(fields[VARIANT_TYPE_FIELD]) and (fields[COMPLEX_ID_FIELD]=="")):
(variants[0])[fields[VARIANT_TYPE_FIELD]] = 1
else:
if (fields[COMPLEX_ID_FIELD]==""):
(variants[0])[fields[VARIANT_TYPE_FIELD]] = (variants[0])[fields[VARIANT_TYPE_FIELD]] + 1
if (fields[CLUSTER_ID_FIELD]!=""):
(clusters[0])[fields[CLUSTER_ID_FIELD]] = fields[CLUSTER_COORD_FIELD]
if (fields[COMPLEX_ID_FIELD]!=""):
(complex[0])[fields[COMPLEX_ID_FIELD]] = fields[COMPLEX_ID_FIELD]
#cat("c", fields[COMPLEX_ID_FIELD], "c")
# 04/15/14 change to all non-complex rows
if (fields[COMPLEX_ID_FIELD]==""):
mutations[0] = mutations[0]+1
if ((fields[COMPLEX_ID_FIELD]=="") and (fields[VARIANT_TYPE_FIELD]=="SNP")):
# 04/15/14 change to all non-complex rows
#mutations <- mutations+1
# for (title in findTitles[as.logical(as.numeric(fields[fieldNames %in% findTitles]))]) {
for title in [findTitles[x] for x in which([bool(x) for x in [int(x) for x in [fields[x] for x in which([x in findTitles for x in fieldNames])]]])]:
mutationCount = (mutList[0])[title][fields[TUMOR_SEQ_ALLELE2_FIELD]]
(mutList[0])[title][fields[TUMOR_SEQ_ALLELE2_FIELD]] = mutationCount + 1
#baseCounts <- as.numeric(fields[fieldNames %in% countTitles])
baseCounts = [int(x) for x in [fields[x] for x in uniqueFieldNumbers]]
for i in range(len(baseCounts)):
(baseCountList[0])[uniqueFieldNames[i]] = (baseCountList[0])[uniqueFieldNames[i]] + baseCounts[i]
else:
sys.stdout.write("X")
def runBuildCommand(arguments = None, currentWorkingDirectory = None, callerArguments = None, init_environment = None):
if init_environment is None:
init_environment = {}
buildcommand = ['make']
if hasattr(callerArguments, 'buildcommand') and callerArguments.buildcommand:
buildcommand = callerArguments.buildcommand.split()
if arguments:
buildcommand.extend(arguments if __builtin__.type(arguments) is list else arguments.split())
return runCommand(buildcommand, currentWorkingDirectory, callerArguments, init_environment = init_environment)
def select(msg="", title="Sikuli Selection", options=(), default=None):
if len(options) == 0:
return ""
if default:
if not __builtin__.type(default) is types.StringType:
try:
default = options[default]
except:
default = None
return Sikulix.popSelect(msg, title, options, default)
def test_should_verify_repeat_field_added_to_questionnaire(self):
xls_parser_response = XlsFormParser(self.REPEAT, u"My questionnairé").parse()
mangroveService = MangroveService(self.mock_request, xls_parser_response=xls_parser_response)
mangroveService.create_project()
questionnaire_code = mangroveService.questionnaire_code
mgr = mangroveService.manager
from_model = get_form_model_by_code(mgr, questionnaire_code)
self.assertNotEqual([], [f for f in from_model.fields if type(f) is FieldSet and f.fields])
def wait(self, target, timeout=None):
ttype = __builtin__.type(target)
if ttype is types.IntType or ttype is types.FloatType:
time.sleep(target)
return
if timeout == None:
ret = JRegion.wait(self, target)
else:
ret = JRegion.wait(self, target, timeout)
return ret
def buscarmesasajax(request):
if request.method == 'GET':
q = request.GET['q']
print(type(q))
listado = Mesa.objects.filter(id=q).order_by('sector')[:30]
print("listado mesas ajax")
print(listado)
return render_to_response(
'Salon/modificarmesa/busquedaresultados.html',
{'listado': listado},
context_instance=RequestContext(request))
def format(obj, level=0):
type = __builtin__.type(obj)
if type is NoneType:
return red('None')
if type is TypeType:
pass
if type is BooleanType:
return green(str(obj))
if type in [StringType, UnicodeType]:
return yellow(str(obj))
if type in [IntType, LongType, FloatType, ComplexType]:
return bold_blue(str(obj))
if type in (TupleType, ListType):
open, close = ('(', ')') if type is TupleType else ('[', ']')
if len(obj) is 0:
return open + close
s = []
i = 0
width = str(len(str(len(obj))))
for e in obj:
s.append(('%s[%' + width + 'd] %s') % \
(indent(level + 1), i, format(e, level + 1)))
i += 1
return open + "\n" + \
",\n".join(s) + \
"\n" + indent(level) + close
if type is DictType:
if len(obj) is 0:
return '{}'
width = str(max([flen(format(k)) for k in obj.keys()]))
s = []
for k in obj.keys():
v = obj[k]
s.append(('%s%' + width + 's: %s') % \
(indent(level + 1), format(k), format(v, level + 1)))
return '{' + "\n" + \
",\n".join(s) + \
"\n" + indent(level) + '}'
if type is LambdaType:
return str(obj)
return str(obj)
def capture(*args):
scr = ScreenUnion()
if len(args) == 0:
simg = scr.userCapture()
if simg:
return simg.getFilename()
else:
return None
elif len(args) == 1:
if __builtin__.type(args[0]) is types.StringType or __builtin__.type(args[0]) is types.UnicodeType:
simg = scr.userCapture(args[0])
if simg:
return simg.getFilename()
else:
return None
else:
return scr.capture(args[0]).getFilename()
elif len(args) == 4:
return scr.capture(args[0], args[1], args[2], args[3]).getFilename()
else:
return None
def Field(module, str_enum):
class_module = __builtin__.type(module, (object,), {})
str_enum = str_enum.replace(" ", "")
str_enum = str_enum.replace("\n", "")
idx = 0
for name in str_enum.split(","):
if '=' in name:
name,val = name.rsplit('=', 1)
if val.isalnum():
idx = eval(val)
setattr(class_module, name.strip(), idx)
idx += 1
return class_module
def paste(self, *args):
if len(args) == 1:
target = None
s = args[0]
elif len(args) == 2:
target = args[0]
s = args[1]
t_str = __builtin__.type(s)
if t_str is types.UnicodeType:
pass # do nothing
elif t_str is types.StringType:
s = java.lang.String(s, "utf-8")
return JRegion.paste(self, target, s)
def runInstallCommand(arguments = ['install'], currentWorkingDirectory = None, callerArguments = None, init_environment = None):
if init_environment is None:
init_environment = {}
if hasattr(callerArguments, 'installcommand') and callerArguments.installcommand:
installcommand = callerArguments.installcommand.split()
else:
installcommand = ['make', '-j1']
# had the case that the -j1 on the make command was ignored if there is a MAKEFLAGS variable
if os.name != 'nt':
init_environment["MAKEFLAGS"] = "-j1"
if arguments:
installcommand.extend(arguments if __builtin__.type(arguments) is list else arguments.split())
return runCommand(installcommand, currentWorkingDirectory, callerArguments, init_environment = init_environment)
def __init__(self, name, type=None, value=None):
if value == None:
self.name = str(name)
self.value = name
else:
assert (isinstance(name, str))
self.name = name
self.value = value
if type == None:
self.type = self.__types[__builtin__.type(self.value)]
else:
self.type = str(type)
self.op = "cnst"
self.args = (value, )
def setbyteorder(endianness):
import __builtin__
if endianness in (config.byteorder.bigendian,config.byteorder.littleendian):
for k,v in globals().iteritems():
if v is not integer_t and isinstance(v,__builtin__.type) and issubclass(v,integer_t) and getattr(v, 'byteorder', config.defaults.integer.order) != endianness:
d = dict(v.__dict__)
d['byteorder'] = endianness
globals()[k] = __builtin__.type(v.__name__, v.__bases__, d) # re-instantiate types
continue
return
elif getattr(endianness, '__name__', '').startswith('big'):
return setbyteorder(config.byteorder.bigendian)
elif getattr(endianness, '__name__', '').startswith('little'):
return setbyteorder(config.byteorder.littleendian)
raise ValueError("Unknown integer endianness {!r}".format(endianness))
def buscarmesasajaxResultados(request):
if request.method == 'GET':
q = request.GET['q']
print(type(q))
if q != "":
mesas = Mesa.objects.filter(id=q).order_by('sector')
else:
mesas_lista = Mesa.objects.all().order_by("sector")
paginator = Paginator(mesas_lista, PAGINADO_PRODUCTOS)
mesas = paginator.page(1)
return render_to_response(
'Salon/modificarmesa/busquedaresultados_items.html',
{'mesas': mesas},
context_instance=RequestContext(request))
def isErrorReply(self, data):
"""
"""
if ioHub.isIterable(data) and len(data) > 0:
if ioHub.isIterable(data[0]):
return False
else:
if (type(data[0])
in (str, unicode)) and data[0].find('ERROR') >= 0:
return ioHubClientException(data)
return False
else:
raise ioHubClientException(
'Response from ioHub should always be iterable and have a length > 0'
)
def onChange(self, arg1, arg2=None):
t_arg1 = __builtin__.type(arg1)
if t_arg1 is types.IntType:
min_size = arg1
handler = arg2
else:
min_size = None
handler = arg1
class AnonyObserver(SikuliEventAdapter):
def targetChanged(self, event):
handler(event)
if min_size != None:
return JRegion.onChange(self, min_size, AnonyObserver())
return JRegion.onChange(self, AnonyObserver())
def __call__(cls, *lstArgs, **dictArgs):
"""
Creates an instance (OWL individual)
"""
#create the instance of cls in memory
instance = cls.__new__(cls)
#doesn't seem to be necessary
#instance.__init__()
#set attributes
#gives the illusion of instantiating multiple classes
#this is a dirty hack, but perhaps all that's possible given
#Python's semantics
#print type(instance)
instance._types = []
if len(lstArgs) == 2:
instance._types = lstArgs[1]
instance._types.append(__builtin__.type(instance))
#store the type name for use in Ontology.py
if len(lstArgs) == 2:
instance._type_names = []
for t in lstArgs[1]:
instance._type_names.append(t.name)
#quote is not strictly needed here, but it's added to be
#consistent with the uri of 'cls' in 'new'
instance.uri = quote(URIRef(lstArgs[0]))
instance.name = getLocalName(instance.uri)
#instance.uri=instance.uri.replace('#','/')
#instance.getTypeNames=instancemethod(getTypeNames,instance,cls)
instance.getURI = instancemethod(getURI, instance, cls)
#print 'created a '+cls.name
cls._instances.append(instance)
return instance
def __init__(self,
timeout=0,
compress=False,
host='',
port=0,
protocolMajor=0,
protocolMinor=0,
encodingMajor=0,
encodingMinor=0,
mcastInterface='',
mcastTtl=0):
if __builtin__.type(self) == _M_Ice.UDPEndpointInfo:
raise RuntimeError('Ice.UDPEndpointInfo is an abstract class')
_M_Ice.IPEndpointInfo.__init__(self, timeout, compress, host, port)
self.protocolMajor = protocolMajor
self.protocolMinor = protocolMinor
self.encodingMajor = encodingMajor
self.encodingMinor = encodingMinor
self.mcastInterface = mcastInterface
self.mcastTtl = mcastTtl
def create_schema(self, tableName, *args, **kwarg):
try:
cur_table = Table(
tableName, self.metadata,
Column('Tid',
self.__type_map['int'],
primary_key=True,
autoincrement=True))
for key in kwarg:
cur_table.append_column(
Column(key, self.__type_map[kwarg[key]]))
cur_table.create()
setattr(
self, tableName,
__builtin__.type(str(tableName), (self.__Base, ),
{'__table__': cur_table}))
self.tab_list[table_name] = (getattr(self, table_name))
except Exception as e:
print Exception, ":", e
finally:
return
