def makeDeleteApiDialoge(self):
okButton = qt.QPushButton("OK")
cancelButton = qt.QPushButton("Cancel")
messageLabel = qt.QTextEdit()
messageLabel.setReadOnly(True)
messageLabel.insertPlainText("Are you sure you want to delete the selected API?")
messageLabel.setFontWeight(100)
messageLabel.setFixedHeight(40)
messageLabel.setFrameShape(0)
currLayout = qt.QVBoxLayout()
currLayout.addWidget(messageLabel)
#currLayout.addStretch(1)
buttonLayout = qt.QHBoxLayout()
buttonLayout.addStretch(1)
buttonLayout.addWidget(cancelButton)
buttonLayout.addWidget(okButton)
masterForm = qt.QFormLayout()
masterForm.addRow(currLayout)
masterForm.addRow(buttonLayout)
deleteApiDialog = qt.QDialog(self.apiTable)
deleteApiDialog.setWindowTitle("Delete API")
deleteApiDialog.setLayout(masterForm)
deleteApiDialog.setWindowModality(1)
cancelButton.connect("clicked()", deleteApiDialog.hide)
okButton.connect("clicked()", self.deleteApi)
return deleteApiDialog
def __init__(self, parent):
vLayout = qt.QVBoxLayout(parent)
formLayout = qt.QFormLayout()
self.nameEdit = qt.QLineEdit()
formLayout.addRow("Name:", self.nameEdit)
self.categoryEdit = qt.QLineEdit()
formLayout.addRow("Category:", self.categoryEdit)
self.descriptionEdit = qt.QTextEdit()
self.descriptionEdit.acceptRichText = False
formLayout.addRow("Description:", self.descriptionEdit)
self.contributorsList = EditableTreeWidget()
self.contributorsList.rootIsDecorated = False
self.contributorsList.selectionBehavior = qt.QAbstractItemView.SelectRows
self.contributorsList.selectionMode = qt.QAbstractItemView.ExtendedSelection
self.contributorsList.setHeaderLabels(["Name", "Organization"])
formLayout.addRow("Contributors:", self.contributorsList)
vLayout.addLayout(formLayout)
vLayout.addStretch(1)
self.buttonBox = qt.QDialogButtonBox()
self.buttonBox.setStandardButtons(qt.QDialogButtonBox.Ok
| qt.QDialogButtonBox.Cancel)
vLayout.addWidget(self.buttonBox)
def setup(self):
tests = (
('Get Sample Data', self.downloadMRHead),
('Reslicing', self.reslicing),
# ( 'timeProbe', self.timeProbe ),
# ( 'sizeProbe', self.sizeProbe),
# ( 'fakewin', self.fakewin ),
)
for test in tests:
b = qt.QPushButton(test[0])
self.layout.addWidget(b)
b.connect('clicked()', test[1])
self.tclEnabled = qt.QCheckBox("Tcl Enabled")
self.layout.addWidget(self.tclEnabled)
self.tclEnabled.setToolTip(
"Toggles processing of tcl events - disables tcl-based functionality including pan/zoom, window/level, and Editor module."
)
self.tclEnabled.setChecked(
not bool(int(tcl('set ::SWidget::DISABLE_CALLBACKS'))))
self.tclEnabled.connect("clicked()", self.onTclEnabled)
self.log = qt.QTextEdit()
self.log.readOnly = True
self.layout.addWidget(self.log)
self.log.insertHtml('<p>Status: <i>Idle</i>\n')
self.log.insertPlainText('\n')
self.log.ensureCursorVisible()
# Add spacer to layout
self.layout.addStretch(1)
def __init__(self, Setting=None):
"""
@param Setting: The Setting to associate with the widget
(i.e. Setting_Details)
@type Setting: Setting
"""
super(NodeDetails, self).__init__()
self.storedDetailsDict = None
self.Setting = Setting
self.currFont = NodeDetails.DEFAULT_FONT
self._layout = qt.QFormLayout()
self._layout.setContentsMargins(0, 0, 0, 0)
self.numColumns = 2
self.__textViewer = qt.QTextEdit(self)
self.__textViewer.setReadOnly(True)
self.__textViewer.setObjectName('nodeDetails')
self.__textViewer.setStyleSheet('#nodeDetails{border: none;}')
self.__textViewer.verticalScrollBar().setFixedWidth(15)
self._layout.addWidget(self.__textViewer)
self.setLayout(self._layout)
self.__showEmptyMetadata = True
self.Setting.Events.onEvent('SHOWEMPTY', self.__toggleEmptyMetadata)
#--------------------
# NOTE: We call this so that the callback above will sync before load.
#--------------------
self.Setting.syncToFile()
self.updateFromSettings()
def setup(self):
# Instantiate and connect widgets ...
# Collapsible button
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the parameters collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
# fiber
self.fiberSelector = slicer.qMRMLNodeComboBox(
parametersCollapsibleButton)
self.fiberSelector.nodeTypes = (("vtkMRMLFiberBundleNode"), "")
self.fiberSelector.selectNodeUponCreation = False
self.fiberSelector.addEnabled = False
self.fiberSelector.removeEnabled = False
self.fiberSelector.noneEnabled = True
self.fiberSelector.showHidden = False
self.fiberSelector.showChildNodeTypes = False
self.fiberSelector.setMRMLScene(slicer.mrmlScene)
self.fiberSelector.setToolTip(
"Pick the full-brain tractography in VTK format: It must be a vtkPolyData object where all the cells are lines."
)
parametersFormLayout.addRow("Fiber Bundle", self.fiberSelector)
# label map
self.labelSelector = slicer.qMRMLNodeComboBox(
parametersCollapsibleButton)
self.labelSelector.nodeTypes = (("vtkMRMLScalarVolumeNode"), "")
#self.labelSelector.addAttribute( "vtkMRMLScalarVolumeNode", "LabelMap", 1 )
self.labelSelector.selectNodeUponCreation = False
self.labelSelector.addEnabled = False
self.labelSelector.removeEnabled = False
self.labelSelector.noneEnabled = True
self.labelSelector.showHidden = False
self.labelSelector.showChildNodeTypes = False
self.labelSelector.setMRMLScene(slicer.mrmlScene)
self.labelSelector.setToolTip(
"Pick A brain parcellation, obtained from freesurfer in the same space as the full-brain tractography."
)
parametersFormLayout.addRow("Brain Parcellation ", self.labelSelector)
# query script
self.queryScript = qt.QTextEdit()
self.queryScript.setToolTip("WMQL query text.")
#self.labelValue.setValue(1)
parametersFormLayout.addWidget(self.queryScript)
# apply
self.applyButton = qt.QPushButton(parametersCollapsibleButton)
self.applyButton.text = "Apply"
parametersFormLayout.addWidget(self.applyButton)
self.applyButton.connect('clicked()', self.onApply)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
# reload button
self.reloadButton = qt.QPushButton("Reload")
self.reloadButton.name = "WebServer Reload"
self.reloadButton.toolTip = "Reload this module."
self.layout.addWidget(self.reloadButton)
self.reloadButton.connect('clicked(bool)', self.onReload)
self.log = qt.QTextEdit()
self.log.readOnly = True
self.layout.addWidget(self.log)
self.logMessage('<p>Status: <i>Idle</i>\n')
# log to console
self.logToConsole = qt.QCheckBox('Log to Console')
self.logToConsole.setChecked(self.consoleMessages)
self.logToConsole.toolTip = "Copy log messages to the python console and parent terminal"
self.layout.addWidget(self.logToConsole)
self.logToConsole.connect('clicked()', self.setLogging)
# log to GUI
self.logToGUI = qt.QCheckBox('Log to GUI')
self.logToGUI.setChecked(self.guiMessages)
self.logToGUI.toolTip = "Copy log messages to the log widget"
self.layout.addWidget(self.logToGUI)
self.logToGUI.connect('clicked()', self.setLogging)
# clear log button
self.clearLogButton = qt.QPushButton("Clear Log")
self.clearLogButton.toolTip = "Clear the log window."
self.layout.addWidget(self.clearLogButton)
self.clearLogButton.connect('clicked()', self.log.clear)
# TODO: button to start/stop server
# TODO: warning dialog on first connect
# TODO: config option for port
# open local connection button
self.localConnectionButton = qt.QPushButton("Open Page")
self.localConnectionButton.toolTip = "Open a connection to the server on the local machine."
self.layout.addWidget(self.localConnectionButton)
self.localConnectionButton.connect('clicked()',
self.openLocalConnection)
self.logic = WebServerLogic(logMessage=self.logMessage)
self.logic.start()
# Add spacer to layout
self.layout.addStretch(1)
def __init__(self, text='Empty Text', title=''):
"""
@param text: The rich text value to display.
@type text: string
@param title: The window title.
@type title: string
"""
super(XnatTextPopup, self).__init__(title=title)
self.setFixedHeight(70)
self.textEdit = qt.QTextEdit(text)
self.textEdit.setAlignment(0x0084)
self.textEdit.setStyleSheet('border: none')
emptyRow = qt.QLabel('')
self.masterLayout.addRow(emptyRow)
self.masterLayout.addRow(self.textEdit)
def setup(self):
collapsibleButton = ctk.ctkCollapsibleButton()
collapsibleButton.text = "Robex Brain Extraction"
self.layout.addWidget(collapsibleButton)
self.formLayout = qt.QFormLayout(collapsibleButton)
self.formFrame = qt.QFrame(collapsibleButton)
self.formFrame.setLayout(qt.QHBoxLayout())
self.formLayout.addWidget(self.formFrame)
# folder text field
# will search under this folder and 1 level below this folder
self.textfield = qt.QTextEdit()
self.formLayout.addRow("folder", self.textfield)
# input file name text field
# will search for files matching this name
self.brainfileTextfield = qt.QTextEdit()
self.formLayout.addRow("input files", self.brainfileTextfield)
button = qt.QPushButton("Generate brain.obj and brainmask.nii")
button.connect("clicked(bool)", self.robexBrainExtractionButtonClicked)
self.formLayout.addRow(button)
# output file name
# input file names and output file names will match line by line
self.brainOutputTextfield = qt.QTextEdit()
self.formLayout.addRow("output files", self.brainOutputTextfield)
collapsibleButtonB = ctk.ctkCollapsibleButton()
collapsibleButtonB.text = "Tumor Segmentation"
self.layout.addWidget(collapsibleButtonB)
self.formLayoutB = qt.QFormLayout(collapsibleButtonB)
self.formFrameB = qt.QFrame(collapsibleButtonB)
self.formFrameB.setLayout(qt.QHBoxLayout())
self.formLayoutB.addWidget(self.formFrameB)
self.textfieldB = qt.QTextEdit()
self.formLayoutB.addRow("folder", self.textfieldB)
self.segmentationfileTextfield = qt.QTextEdit()
self.formLayoutB.addRow("input files", self.segmentationfileTextfield)
buttonB = qt.QPushButton("Generate segmentation.obj")
buttonB.connect("clicked(bool)", self.informationButtonClicked)
self.formLayoutB.addRow(buttonB)
self.segmentationOutputTextfield = qt.QTextEdit()
self.formLayoutB.addRow("output files",
self.segmentationOutputTextfield)
def setup(self):
# Instantiate and connect widgets ...
# Collapsible button
sampleCollapsibleButton = ctk.ctkCollapsibleButton()
sampleCollapsibleButton.text = "Directory to Monitor"
self.layout.addWidget(sampleCollapsibleButton)
# Layout within the sample collapsible button
sampleFormLayout = qt.QFormLayout(sampleCollapsibleButton)
#directory selector
self.outputDirSelector = ctk.ctkPathLineEdit()
self.outputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.outputDirSelector.settingKey = 'BlenderMonitorDir'
sampleFormLayout.addRow("Blender tmp directory:",
self.outputDirSelector)
if not self.outputDirSelector.currentPath:
self_dir = os.path.dirname(os.path.abspath(__file__))
defaultOutputPath = os.path.join(self_dir, "tmp")
if not os.path.exists(defaultOutputPath):
print(defaultOutputPath)
defaultOutputPath = slicer.app.defaultScenePath
self.outputDirSelector.setCurrentPath(defaultOutputPath)
# Play button
playButton = qt.QPushButton("Start")
playButton.toolTip = "Start Monitoring Directory."
playButton.checkable = True
sampleFormLayout.addRow(playButton)
playButton.connect('toggled(bool)', self.onPlayButtonToggled)
self.playButton = playButton
#Report Window
self.text_report = qt.QTextEdit()
self.text_report.setText('Report file changes here')
sampleFormLayout.addRow('Dir Status:', self.text_report)
def __init__(self, MODULE=None):
""" Init function.
"""
#--------------------
# Call parent init.
#--------------------
super(XnatNodeDetails, self).__init__()
self.MODULE = MODULE
#self.settingsButton = self.MODULE.utils.makeSettingsButton(self.MODULE.XnatDetailsSettings)
self.textEdit = qt.QTextEdit(self)
self.currFont = self.MODULE.GLOBALS.LABEL_FONT
self.textEdit.setFont(self.currFont)
self.textEdit.setReadOnly(True)
self._layout = qt.QGridLayout()
self._layout.setContentsMargins(0, 0, 0, 0)
#--------------------
# Call parent init.
#--------------------
self.numColumns = 2
self.textEdit.setStyleSheet(
'border: none; padding: 0px; margin-left: 0px; margin-right: 0px')
#--------------------
# NOTE: fixes a scaling error that occurs with the scroll
# bar. Have yet to pinpoint why this happens.
#--------------------
self.textEdit.verticalScrollBar().setStyleSheet('width: 15px;')
self._layout.addWidget(self.textEdit, 0, 0)
self.setLayout(self._layout)
def setup(self):
tests = (
('Get Sample Data', self.downloadMRHead),
('Reslicing', self.reslicing),
('Chart Test', self.chartTest),
('Web View Test', self.webViewTest),
('Memory Check', self.memoryCheck),
)
for test in tests:
b = qt.QPushButton(test[0])
self.layout.addWidget(b)
b.connect('clicked()', test[1])
self.log = qt.QTextEdit()
self.log.readOnly = True
self.layout.addWidget(self.log)
self.log.insertHtml('<p>Status: <i>Idle</i>\n')
self.log.insertPlainText('\n')
self.log.ensureCursorVisible()
# Add spacer to layout
self.layout.addStretch(1)
def addDownloadRow(self, uri, size=-1):
""" Constructs a download row object based
on the URI
"""
#-------------------
# Cancel button row
#-------------------
rowWidget = qt.QWidget()
rowWidget.setObjectName('downloadRowWidget')
rowWidget.setStyleSheet(
'#downloadRowWidget {border: 1px ' +
' solid rgb(160,160,160); border-radius: 2px; width: 100%;}')
#rowWidget.setFixedHeight(self.rowWidgetHeight)
#rowWidget.setSizePolicy(qt.QSizePolicy.MinimumExpanding,
# qt.QSizePolicy.MinimumExpanding)
layout = qt.QVBoxLayout()
rowWidget.setLayout(layout)
#-------------------
# Text Edit
#-------------------
textEdit = qt.QTextEdit()
textEdit.setStyleSheet("border: none")
textEdit.setFixedHeight(55)
textEdit.verticalScrollBar().hide()
textEdit.setFont(
qt.QFont(XnatDownloadPopup.FONT_NAME, XnatDownloadPopup.FONT_SIZE,
10, False))
layout.addWidget(textEdit)
#-------------------
# Progress Bar
#-------------------
progressBar = qt.QProgressBar(rowWidget)
progressBar.setFixedHeight(17)
progressBar.setFixedWidth(600)
progressBar.setMinimum(0)
progressBar.setMaximum(100)
progressBar.setAlignment(0x0084)
#-------------------
# Cancel button row
#-------------------
cancelButton = qt.QPushButton()
cancelButton.setText("Cancel")
cancelButton.setFont(XnatDownloadPopup.LABEL_FONT)
cancelButton.setFixedWidth(60)
cancelButton.setFixedHeight(19)
#-------------------
# Progress bar row
#-------------------
progressRow = qt.QHBoxLayout()
progressRow.addWidget(progressBar)
progressRow.addStretch()
progressRow.addWidget(cancelButton)
layout.addLayout(progressRow)
#-------------------
# Row dict
#-------------------
downloadRow = {
'queuePosition': len(self.downloadRows),
'size': 0,
'downloaded': 0,
'textEdit': textEdit,
'pathDict': XnatSlicerUtils.getXnatPathDict(uri),
'progressBar': progressBar,
'widget': rowWidget,
'cancelButton': cancelButton
}
#-------------------
# default text
#-------------------
dlStr = self.makeDownloadPath(downloadRow['pathDict'])
textEdit.setText("QUEUED<br>%s<br>Please wait...<br>" % (dlStr))
#-------------------
# Cancel callback
#-------------------
def cancelClick():
rowWidget.setEnabled(False)
#print "Cancelling download '%s'"%(dlStr)
textEdit.setText(textEdit.toHtml().replace('DOWNLOADING',
'CANCELLED'))
for key, item in self.downloadRows.iteritems():
if item['progressBar'] == progressBar:
item['progressBar'].setEnabled(False)
item['progressBar'].setMaximum(100)
self.cancelCallback(key)
cancelButton.connect('pressed()', cancelClick)
self.downloadRows[uri] = downloadRow
self.remakeWidget()
def makeDeleteHostModal(hostEditor):
""" As stated.
"""
#--------------------
# get selected strings from host list
#--------------------
selHost = hostEditor.hostTable.currentRowItems
#--------------------
# Buttons
#--------------------
okButton = qt.QPushButton("OK")
cancelButton = qt.QPushButton("Cancel")
#--------------------
# Labels
#--------------------
messageLabel = qt.QTextEdit()
messageLabel.setReadOnly(True)
messageLabel.insertPlainText("Are you sure you want to delete the host ")
messageLabel.setFontItalic(True)
messageLabel.setFontWeight(100)
messageLabel.insertPlainText(selHost['name'])
messageLabel.setFontWeight(0)
messageLabel.insertPlainText(" ?")
messageLabel.setFixedHeight(40)
messageLabel.setFrameShape(0)
#--------------------
# Layouts
#--------------------
currLayout = qt.QVBoxLayout()
currLayout.addWidget(messageLabel)
currLayout.addStretch(1)
buttonLayout = qt.QHBoxLayout()
buttonLayout.addStretch(1)
buttonLayout.addWidget(cancelButton)
buttonLayout.addWidget(okButton)
masterForm = qt.QFormLayout()
masterForm.addRow(currLayout)
masterForm.addRow(buttonLayout)
#--------------------
# Window
#--------------------
deleteHostModal = qt.QDialog(hostEditor.addButton)
deleteHostModal.setWindowTitle("Delete Host")
deleteHostModal.setLayout(masterForm)
deleteHostModal.setWindowModality(2)
#--------------------
# Button Connectors
#--------------------
cancelButton.connect("clicked()", deleteHostModal.close)
okButton.connect("clicked()", hostEditor.deleteHost)
return deleteHostModal
def onEntry(self, comingFrom, transitionType):
Helper.Info('Report step: entering onEntry()')
super(ChangeTrackerReportROIStep,
self).onEntry(comingFrom, transitionType)
pNode = self.parameterNode()
Helper.Info('Report step: onEntry')
# create the tabs
self.__metricsTabs.clear()
metrics = pNode.GetParameter('metrics')
self.__metricTabsList = {}
self.__metricsVolumes = {}
print 'Metrics list: ', metrics
metricsReports = string.split(pNode.GetParameter('resultReports'), ',')
metricsVolumesIDs = string.split(pNode.GetParameter('resultVolumes'),
',')
i = 0
metricsList = string.split(metrics, ',')
if len(metricsVolumesIDs) != len(metricsList):
Helper.Error('Missing metric processing results!')
for m in metricsList:
metricWidget = qt.QWidget()
metricLayout = qt.QFormLayout(metricWidget)
textWidget = qt.QTextEdit()
textWidget.setReadOnly(1)
self.__metricsVolumes[m] = metricsVolumesIDs[i]
currentVolume = Helper.getNodeByID(metricsVolumesIDs[i])
textWidget.setText(currentVolume.GetDescription())
metricLayout.addRow(textWidget)
self.__metricsTabs.addTab(metricWidget, m)
self.__metricTabsList[m] = textWidget
i = i + 1
self.__metricsTabs.connect("currentChanged(int)", self.onTabChanged)
# change the layout to Compare
lm = slicer.app.layoutManager()
lm.setLayout(12)
lm.setLayoutNumberOfCompareViewRows(2)
pNode = self.parameterNode()
# use GetLayoutName() to identify the corresponding slice node and slice
# composite node
# find the compare nodes and initialize them as we wish
sliceNodes = slicer.mrmlScene.GetNodesByClass('vtkMRMLSliceNode')
sliceNodes.SetReferenceCount(sliceNodes.GetReferenceCount() - 1)
sliceCompositeNodes = slicer.mrmlScene.GetNodesByClass(
'vtkMRMLSliceCompositeNode')
sliceCompositeNodes.SetReferenceCount(
sliceCompositeNodes.GetReferenceCount() - 1)
# setup slice nodes
for s in range(0, sliceNodes.GetNumberOfItems()):
sNode = sliceNodes.GetItemAsObject(s)
thisLayoutName = sNode.GetLayoutName()
# TODO: check they should have the same layout name!
if thisLayoutName.find('Compare') == 0:
sNode.SetLayoutGrid(1, 6)
# setup slice composite nodes
for s in range(0, sliceCompositeNodes.GetNumberOfItems()):
scNode = sliceCompositeNodes.GetItemAsObject(s)
thisLayoutName = scNode.GetLayoutName()
if thisLayoutName == 'Compare1':
scNode.SetBackgroundVolumeID(
pNode.GetParameter('croppedBaselineVolumeID'))
scNode.SetForegroundVolumeID('')
scNode.SetLabelVolumeID('')
scNode.SetLinkedControl(1)
if thisLayoutName == 'Compare2':
scNode.SetBackgroundVolumeID(
pNode.GetParameter('croppedFollowupVolumeID'))
scNode.SetForegroundVolumeID('')
scNode.SetLabelVolumeID('')
scNode.SetLinkedControl(1)
qt.QTimer.singleShot(0, self.fitSlices)
# Enable crosshairs
# Is there only one crosshair node?
xnodes = slicer.mrmlScene.GetNodesByClass('vtkMRMLCrosshairNode')
xnodes.SetReferenceCount(xnodes.GetReferenceCount() - 1)
self.__xnode = xnodes.GetItemAsObject(0)
if self.__xnode != None:
self.__xnode.SetCrosshairMode(5)
else:
print 'Failed to find crosshair node!'
'''
setup for volume rendering
'''
if self.__vrDisplayNode == None:
# self.__vrDisplayNode = self.__vrLogic.CreateVolumeRenderingDisplayNode()
# reuse existing node
vrDisplayNodeID = pNode.GetParameter('vrDisplayNodeID')
self.__vrDisplayNode = slicer.mrmlScene.GetNodeByID(
vrDisplayNodeID)
#viewNode = slicer.util.getNode('vtkMRMLViewNode1')
#self.__vrDisplayNode.SetCurrentVolumeMapper(0)
#self.__vrDisplayNode.AddViewNodeID(viewNode.GetID())
'''
trigger volume rendering and label update
'''
self.onTabChanged(0)
pNode.SetParameter('currentStep', self.stepid)
Helper.Info('Report step: leaving onEntry()')
qt.QTimer.singleShot(0, self.killButton)
def createTextarea(self, parentLayout):
# self.textNote = qt.QTextEdit()
# self.formFrame.layout().addWidget(self.textNote)
textarea = qt.QTextEdit()
parentLayout.addWidget(textarea)
return textarea
def setup(self):
# clpStart
self.clpStart, self.formLyout, self.formFrame = self.createClp('Start',
self.layout, qt.QVBoxLayout())
# labPrjpath
self.labPath = self.createLabel('Project Path: ', self.formFrame.layout())
self.labPrjpath = self.createLabel('', self.formFrame.layout())
# btnGetpath
# self.btnGetpath = self.createBtn('Choose Project Folder', self.getPath,
# self.formFrame.layout(),
# 'Choose the top level folder')
# winMain
self.winMain, self.pLayout = self.createWin((100, 50, 500, 700),
'Python Assisted Registration Pipeline',
qt.QVBoxLayout(), maxW=500, minW=400,
maxH=750, minH=650)
self.pInitiated = False
# winFilePanel
self.winFilePanel, self.treeVol, self.treeTfm = self.createFilePanel()
# Note area
self.labNote = self.createLabel('Note', self.formFrame.layout())
self.textNote = qt.QTextEdit()
self.formFrame.layout().addWidget(self.textNote)
# btnShowmain
self.btnShowmain = self.createBtn('Main Panel', self.showMain,
self.layout,
'Start the registration process and show the panel')
# btnFiles
self.btnFiles = self.createBtn('File List', self.showFilePanel, self.layout,
'Open the file list')
# btnShowCopyHeader
self.btnShowCopyHeader = self.createBtn('Copy Header',
lambda: self.winCopyHeader.show(),
self.layout, 'Copy the header from a reference image')
self.btnShowCopyHeader.enabled = False
# btnShowFlipImage
self.btnShowFlipImage = self.createBtn('Flip Image',
lambda: self.winFlipImage.show(),
self.layout, 'Flip an image along an axis')
self.btnShowFlipImage.enabled = False
# btnSaveSetting
self.btnSaveSetting = self.createBtn('Save', self.saveSetting,
self.layout, 'Save the current progress.')
self.btnSaveSetting.enabled = False
# # btnLoadSetting
# self.btnLoadSetting = self.createBtn('Load', lambda: (self.addtoFilePanel(self.inFilePanel), self.refreshStatus()),
# self.layout, 'Load the progress from setting.')
# self.btnLoadSetting.enabled = False
# Other settings
self.prjPath = None
# self.bPathchosen = False
self.patient_number = None
self.outputs = {} # {'step1_1': {fullpath: True/False}}
self.statusLight = {} # {'step1_1', the_label_obj}
self.completed = {} # {'step1_1', True}
self.volumes = {} # {filename: fullpath} for .nii
self.transfms = {} # {filename: fullpath} for .tfm
self.sessFrames = {} # {'step1_1': ref_to_widget}
self.inFilePanel = []
self.imagej_path = path.join(topFolder, r'Tools/ImageJ/ImageJ.exe')
self.cmtk_path = path.join(topFolder, r'Tools/CMTK-2.3.0-Windows-x86/bin')
self.bash_path = path.join(topFolder, r'Tools/cmder/vendor/git-for-windows/bin/bash.exe')
self.cmtkOutput = [
'(in_3d_log_masked)_into_(ex_3d_cropped)_deformable.nii',
'(in_3d)_into_(ex_3d_cropped)_deformable.nii']
self.pkMaps = ['in_dce_gd.nii',
'in_dce_auc.nii',
'in_dce_ire.nii',
'in_dce_irw.nii',
'in_dce_me.nii',
'in_dce_tonset.nii',
'in_dce_twashout.nii',
'in_dce_ttp.nii',
'in_ktrans_left_femoral.nii',
'in_ktrans_right_femoral.nii',
'in_ktrans_weinmann.nii',
'in_ktrans_parker.nii',
'in_ve_left_femoral.nii',
'in_ve_right_femoral.nii',
'in_ve_weinmann.nii',
'in_ve_parker.nii',
'in_iaugc60.nii']
