Beispiel #1
0
    def ic3epa(self, **kwargs):
        b = self.cepa_b()
        b = at.collapse_tensor(b, self)
        b = at.concatenate_amps(b, self)
        oldguess = np.zeros(len(b))
        norm = 1
        self.x = 0*b
        while abs(norm) > 1e-14:
            Aop = scipy.sparse.linalg.LinearOperator((len(b), len(b)), matvec = self.ic3epa_A, rmatvec = self.ic3epa_A)
            x, info = np.array(scipy.sparse.linalg.cg(Aop, -b, x0 = self.x, tol = self.tol))
            norm = (oldguess - x).dot(oldguess - x)
            oldguess = copy.copy(x)
            self.lam = .5*x.T.dot(x)
            self.x = copy.copy(x)

        if self.reference == 'rhf':
            #Ax = at.rhf_to_uhf(self.c3epa_A(x), self)
            #b = at.rhf_to_uhf(b, self)
            #x = at.rhf_to_uhf(x, self)
            energy = self.c3epa_energy(x)
        else:   
            #energy = self.hf_energy + 2*x.T.dot(b) + x.T.dot(self.c3epa_A(x)) 
            energy = self.c3epa_energy(x)

        return energy
Beispiel #2
0
    def ic3epa_A(self, x):
        term1 = self.cepa_A(x)
        term3 = self.x.T.dot(self.A2(self.x))*x

        if self.reference == 'rhf':
            x = at.rhf_to_uhf(x, self)
        x = at.decatenate_amps(x, self, reference = 'uhf')
        x = at.expand_vector(x, self, reference = 'uhf')

        #Initialize Hessian Shapes
        Ax = {} 
        Ax['a'] = np.zeros((self.noa, self.nva))
        Ax['b'] = np.zeros((self.nob, self.nvb))
        Ax['aa'] = np.zeros((self.noa, self.noa, self.nva, self.nva))
        Ax['ab'] = np.zeros((self.noa, self.nob, self.nva, self.nvb))
        Ax['bb'] = np.zeros((self.nob, self.nob, self.nvb, self.nvb))
         
        if self.reference != 'rhf':
            Ax['a'] += contract('ijab,jb->ia', self.l_aaaa[:self.noa, :self.noa, self.noa:, self.noa:], x['a'])
            Ax['a'] += contract('ijab,jb->ia', self.j_abab[:self.noa, :self.nob, self.noa:, self.nob:], x['b'])
            Ax['b'] += contract('ijab,jb->ia', self.l_bbbb[:self.nob, :self.nob, self.nob:, self.nob:], x['b'])
            Ax['b'] += contract('jiba,jb->ia', self.j_abab[:self.noa, :self.nob, self.noa:, self.nob:], x['a'])
        else:
            Ax['a'] += .5*contract('ijab,jb->ia', self.l_aaaa[:self.noa, :self.noa, self.noa:, self.noa:], x['a'])
            Ax['a'] += .5*contract('ijab,jb->ia', self.j_abab[:self.noa, :self.nob, self.noa:, self.nob:], x['b'])
            Ax['a'] += .5*contract('ijab,jb->ia', self.l_bbbb[:self.nob, :self.nob, self.nob:, self.nob:], x['b'])
            Ax['a'] += .5*contract('jiba,jb->ia', self.j_abab[:self.noa, :self.nob, self.noa:, self.nob:], x['a'])
         
        Ax = at.collapse_tensor(Ax, self)
        Ax = at.concatenate_amps(Ax, self)
        return term1+term3+self.x.dot(self.x)*Ax
Beispiel #3
0
    def cepa(self):
        b = self.cepa_b()
        b = at.collapse_tensor(b, self)
        b = at.concatenate_amps(b, self)
        Aop = scipy.sparse.linalg.LinearOperator((len(b), len(b)), matvec = self.cepa_A, rmatvec = self.cepa_A)
        if self.run_svd == True:
            #print(scipy.sparse.linalg.eigsh(Aop, k = 3)[0])
            print('Getting SVD of H_N:')
            print(scipy.sparse.linalg.svds(Aop, k = 3, which = 'SM')[1])
            print(scipy.sparse.linalg.svds(Aop, k = 3, which = 'LM')[1])
            
        #A = self.build_hessian()

        #x, y = np.linalg.eig(A)
        #s, v, d = np.linalg.svd(A)
        #print(sorted(x))
        #print(sorted(v))
        
        x, info = scipy.sparse.linalg.cg(Aop, -b, tol = self.tol)

        if self.reference == 'rhf':
            Ax = at.rhf_to_uhf(self.cepa_A(x), self)
            b = at.rhf_to_uhf(b, self)
            x = at.rhf_to_uhf(x, self)
            energy = self.hf_energy + 2*x.T.dot(b) + x.T.dot(Ax)
        else:   
            energy = self.hf_energy + 2*x.T.dot(b) + x.T.dot(self.cepa_A(x)) 
        return energy
Beispiel #4
0
 def lagrangian(self, x):
     self.lam = .5*x.T.dot(x)
     self.lam = 0
     b = self.cepa_b()
     b = at.collapse_tensor(b, self)
     b = at.concatenate_amps(b, self)
     if self.reference == 'rhf':
         Ax = at.rhf_to_uhf(self.cepa_A(x), self)
         b = at.rhf_to_uhf(b, self)
         x = at.rhf_to_uhf(x, self)
         return abs(np.linalg.norm(Ax+b))
     else:
         return abs(np.linalg.norm(self.cepa_A(x)+b))
Beispiel #5
0
    def c3epa_energy(self, x):
        b = self.cepa_b()
        b = at.collapse_tensor(b, self)
        b = at.concatenate_amps(b, self)
        if self.reference == 'rhf':
            Ax = at.rhf_to_uhf(self.c3epa_A(x), self)
            b = at.rhf_to_uhf(b, self)
            x = at.rhf_to_uhf(x, self)
            energy = self.hf_energy + 2*x.T.dot(b) + x.T.dot(Ax)
        else:
            energy = self.hf_energy + 2*x.T.dot(b) + x.T.dot(self.c3epa_A(x))

        return energy
Beispiel #6
0
 def c3epa(self, **kwargs):
     b = self.cepa_b()
     b = at.collapse_tensor(b, self)
     b = at.concatenate_amps(b, self)
     Aop = scipy.sparse.linalg.LinearOperator((len(b), len(b)), matvec = self.c3epa_A, rmatvec = self.c3epa_A)
     x, info = np.array(scipy.sparse.linalg.cg(Aop, -b, tol = self.tol ))
     if self.reference == 'rhf':
         Ax = at.rhf_to_uhf(self.c3epa_A(x), self)
         b = at.rhf_to_uhf(b, self)
         x = at.rhf_to_uhf(x, self)
         energy = self.hf_energy + 2*x.T.dot(b) + x.T.dot(Ax)
     else:   
         energy = self.hf_energy + 2*x.T.dot(b) + x.T.dot(self.c3epa_A(x)) 
     return energy
Beispiel #7
0
    def shifted_cepa(self):
        b = self.cepa_b()
        b = at.collapse_tensor(b, self)
        b = at.concatenate_amps(b, self)
        norm = 1
        old = b*0
        self.Ec = 0 
        x = 0*b
        self.x = copy.copy(x)
        while abs(norm)>1e-18:         
            Aop = scipy.sparse.linalg.LinearOperator((len(b), len(b)), matvec = self.shifted_A, rmatvec = self.shifted_A)
            x, info = scipy.sparse.linalg.cg(Aop, -b, tol = self.tol, x0 = x)
            if self.reference == 'rhf':
                norm = at.rhf_to_uhf(old-x, self).dot(at.rhf_to_uhf(old-x, self))
            else:
                norm = (old-x).dot(old-x)
            old = copy.copy(x)
            x0 = copy.copy(x)
            if self.reference == 'rhf':

                #print(x2)
                if self.shift == 'ucc3':
                    Ax2 = self.shifted_A(x)
                    #print(Ax2)
                    #energy = self.hf_energy + 2*x2.T.dot(b2) + x2.T.dot(Ax2)-(4/3)*x2.T.dot(xdiag).dot(xdiag).dot(b2)
                    energy = self.ucc3_energy(x)
                    #print(at.rhf_to_uhf(self.shifted_A(x), self))
                else:
                    b2 = at.rhf_to_uhf(b, self)
                    x2 = at.rhf_to_uhf(x, self)
                    Ax2 = at.rhf_to_uhf(self.shifted_A(x), self)
                    energy = self.hf_energy + 2*x2.T.dot(b2) + x2.T.dot(Ax2)
            else:
                if self.shift == 'ucc3':
                    #print(self.shifted_A(x))
                    energy = self.ucc3_energy(x)
                else:  
                    energy = self.hf_energy + 2*x.T.dot(b) + x.T.dot(self.shifted_A(x))        
            self.x = copy.copy(x)
            self.Ec = energy-self.hf_energy
        return energy
Beispiel #8
0
    def cepa_A(self, x):
        if self.reference == 'rhf':
            x = at.rhf_to_uhf(x, self)
        x = at.decatenate_amps(x, self, reference = 'uhf')
        x = at.expand_vector(x, self, reference = 'uhf')

        #Initialize Hessian Shapes
        Ax = {} 
        Ax['a'] = np.zeros((self.noa, self.nva))
        Ax['b'] = np.zeros((self.nob, self.nvb))
        Ax['aa'] = np.zeros((self.noa, self.noa, self.nva, self.nva))
        Ax['ab'] = np.zeros((self.noa, self.nob, self.nva, self.nvb))
        Ax['bb'] = np.zeros((self.nob, self.nob, self.nvb, self.nvb))

        #S->S F (Particle Interaction)
        Ax['a'] += contract('ab,ib->ia', self.fa[self.noa:, self.noa:], x['a'])
        if self.reference != 'rhf':
            Ax['b'] += contract('ab,ib->ia', self.fb[self.nob:, self.nob:], x['b'])
       

        #S->S F (Hole Interaction)
        Ax['a'] -= contract('ji,ja->ia', self.fa[:self.noa, :self.noa], x['a'])
        if self.reference != 'rhf':
            Ax['b'] -= contract('ji,ja->ia', self.fb[:self.nob, :self.nob], x['b'])

        #S->S V 
        Ax['a'] += contract('jabi,jb->ia', self.l_aaaa[:self.noa, self.noa:, self.noa:, :self.noa], x['a'])
        Ax['a'] += contract('ajib,jb->ia', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['b'])
        if self.reference != 'rhf':
            Ax['b'] += contract('jabi,jb->ia', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['a'])
            Ax['b'] += contract('jabi,jb->ia', self.l_bbbb[:self.nob, self.nob:, self.nob:, :self.nob], x['b'])

        #S->D V (Hole Interaction)
        Ax['aa'] -= contract('kbij,ka->ijab', self.l_aaaa[:self.noa, self.noa:, :self.noa, :self.noa], x['a'])
        Ax['aa'] += contract('kaij,kb->ijab', self.l_aaaa[:self.noa, self.noa:, :self.noa, :self.noa], x['a'])
        Ax['ab'] -= contract('kbij,ka->ijab', self.j_abab[:self.noa, self.nob:, :self.noa, :self.nob], x['a'])
        Ax['ab'] -= contract('akij,kb->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, :self.nob], x['b'])
        if self.reference != 'rhf':
            Ax['bb'] -= contract('kbij,ka->ijab', self.l_bbbb[:self.nob, self.nob:, :self.nob, :self.nob], x['b'])
            Ax['bb'] += contract('kaij,kb->ijab', self.l_bbbb[:self.nob, self.nob:, :self.nob, :self.nob], x['b'])

        #S->D V (Particle Interaction)
        Ax['aa'] += contract('abcj,ic->ijab', self.l_aaaa[self.noa:, self.noa:, self.noa:, :self.noa], x['a'])
        Ax['aa'] -= contract('abci,jc->ijab', self.l_aaaa[self.noa:, self.noa:, self.noa:, :self.noa], x['a'])
        Ax['ab'] += contract('abcj,ic->ijab', self.j_abab[self.noa:, self.nob:, self.noa:, :self.nob], x['a'])
        Ax['ab'] += contract('abic,jc->ijab', self.j_abab[self.noa:, self.nob:, :self.noa, self.nob:], x['b'])
        if self.reference != 'rhf':
            Ax['bb'] += contract('abcj,ic->ijab', self.l_bbbb[self.nob:, self.nob:, self.nob:, :self.nob], x['b'])
            Ax['bb'] -= contract('abci,jc->ijab', self.l_bbbb[self.nob:, self.nob:, self.nob:, :self.nob], x['b'])

        
        #D->S V (Hole Interaction)
        rt2 = np.sqrt(2)
        '''
        Ax['a'] -= .5*contract('kjib,kjab->ia', self.l_aaaa[:self.noa, :self.noa, :self.noa, self.noa:], x['aa']) 
        Ax['a'] -= contract('kjib,kjab->ia', self.j_abab[:self.noa, :self.nob, :self.noa, self.nob:], x['ab'])
        if self.reference != 'rhf':
            Ax['b'] -= .5*contract('kjib,kjab->ia', self.l_bbbb[:self.nob, :self.nob, :self.nob, self.nob:], x['bb'])
            Ax['b'] -= contract('jkbi,jkba->ia', self.j_abab[:self.noa, :self.nob, self.noa:, :self.nob], x['ab'])
        '''
        if self.reference != 'rhf':
            Ax['a'] -= .5*contract('kjib,kjab->ia', self.l_aaaa[:self.noa, :self.noa, :self.noa, self.noa:], x['aa']) 
            Ax['a'] -= contract('kjib,kjab->ia', self.j_abab[:self.noa, :self.nob, :self.noa, self.nob:], x['ab'])
            Ax['b'] -= .5*contract('kjib,kjab->ia', self.l_bbbb[:self.nob, :self.nob, :self.nob, self.nob:], x['bb'])
            Ax['b'] -= contract('jkbi,jkba->ia', self.j_abab[:self.noa, :self.nob, self.noa:, :self.nob], x['ab'])
        else:
            Ax['a'] -= 1/2 * .5*contract('kjib,kjab->ia', self.l_aaaa[:self.noa, :self.noa, :self.noa, self.noa:], x['aa']) 
            Ax['a'] -= 1/2 * contract('kjib,kjab->ia', self.j_abab[:self.noa, :self.nob, :self.noa, self.nob:], x['ab'])
            Ax['a'] -= 1/2 * .5*contract('kjib,kjab->ia', self.l_bbbb[:self.nob, :self.nob, :self.nob, self.nob:], x['bb'])
            Ax['a'] -= 1/2 * contract('jkbi,jkba->ia', self.j_abab[:self.noa, :self.nob, self.noa:, :self.nob], x['ab'])
 
        #D->S V (Particle Interaction)
        '''
        Ax['a'] += .5*contract('ajcb,ijcb->ia', self.l_aaaa[self.noa:, :self.noa, self.noa:, self.noa:], x['aa'])
        Ax['a'] += contract('ajcb,ijcb->ia', self.j_abab[self.noa:, :self.nob, self.noa:, self.nob:], x['ab'])
        if self.reference != 'rhf':
            Ax['b'] += .5*contract('ajcb,ijcb->ia', self.l_bbbb[self.nob:, :self.nob, self.nob:, self.nob:], x['bb'])
            Ax['b'] += contract('jabc,jibc->ia', self.j_abab[:self.noa, self.nob:, self.noa:, self.nob:], x['ab'])
        '''
        if self.reference != 'rhf':
            Ax['a'] += .5*contract('ajcb,ijcb->ia', self.l_aaaa[self.noa:, :self.noa, self.noa:, self.noa:], x['aa'])
            Ax['a'] += contract('ajcb,ijcb->ia', self.j_abab[self.noa:, :self.nob, self.noa:, self.nob:], x['ab'])
            Ax['b'] += .5*contract('ajcb,ijcb->ia', self.l_bbbb[self.nob:, :self.nob, self.nob:, self.nob:], x['bb'])
            Ax['b'] += contract('jabc,jibc->ia', self.j_abab[:self.noa, self.nob:, self.noa:, self.nob:], x['ab'])
        else:
            Ax['a'] += 1/2 * .5*contract('ajcb,ijcb->ia', self.l_aaaa[self.noa:, :self.noa, self.noa:, self.noa:], x['aa'])
            Ax['a'] += 1/2 * contract('ajcb,ijcb->ia', self.j_abab[self.noa:, :self.nob, self.noa:, self.nob:], x['ab'])
            Ax['a'] += 1/2 * .5*contract('ajcb,ijcb->ia', self.l_bbbb[self.nob:, :self.nob, self.nob:, self.nob:], x['bb'])
            Ax['a'] += 1/2 * contract('jabc,jibc->ia', self.j_abab[:self.noa, self.nob:, self.noa:, self.nob:], x['ab'])
            
 
        #D->D F (Hole Interaction)
        '''
        Ax['aa'] -= (contract('kj,ikab->ijab', self.fa[:self.noa, :self.noa], x['aa']))
        Ax['aa'] += (contract('ki,jkab->ijab', self.fa[:self.noa, :self.noa], x['aa']))

        Ax['ab'] -= contract('kj,ikab->ijab', self.fb[:self.nob, :self.nob], x['ab'])
        Ax['ab'] -= contract('ki,kjab->ijab', self.fa[:self.noa, :self.noa], x['ab'])

        if self.reference != 'rhf':
            Ax['bb'] -= (contract('kj,ikab->ijab', self.fb[:self.nob, :self.nob], x['bb']))
            Ax['bb'] += (contract('ki,jkab->ijab', self.fb[:self.nob, :self.nob], x['bb']))
        '''
        Ax['ab'] -= contract('kj,ikab->ijab', self.fb[:self.nob, :self.nob], x['ab'])
        Ax['ab'] -= contract('ki,kjab->ijab', self.fa[:self.noa, :self.noa], x['ab'])
        if self.reference != 'rhf':     
            Ax['aa'] -= (contract('kj,ikab->ijab', self.fa[:self.noa, :self.noa], x['aa']))
            Ax['aa'] += (contract('ki,jkab->ijab', self.fa[:self.noa, :self.noa], x['aa']))
            Ax['bb'] -= (contract('kj,ikab->ijab', self.fb[:self.nob, :self.nob], x['bb']))
            Ax['bb'] += (contract('ki,jkab->ijab', self.fb[:self.nob, :self.nob], x['bb']))
        else:
            Ax['aa'] -= .5*(contract('kj,ikab->ijab', self.fa[:self.noa, :self.noa], x['aa']))
            Ax['aa'] += .5*(contract('ki,jkab->ijab', self.fa[:self.noa, :self.noa], x['aa']))
            Ax['aa'] -= .5*(contract('kj,ikab->ijab', self.fb[:self.nob, :self.nob], x['bb']))
            Ax['aa'] += .5*(contract('ki,jkab->ijab', self.fb[:self.nob, :self.nob], x['bb']))
            
        #D->D F (Particle Interaction)
        '''
        Ax['aa'] += contract('bc,ijac->ijab', self.fa[self.noa:, self.noa:], x['aa'])
        Ax['aa'] -= contract('ac,ijbc->ijab', self.fa[self.noa:, self.noa:], x['aa'])
        Ax['ab'] += contract('bc,ijac->ijab', self.fb[self.nob:, self.nob:], x['ab'])
        Ax['ab'] += contract('ac,ijcb->ijab', self.fa[self.noa:, self.noa:], x['ab'])
        if self.reference != 'rhf':
            Ax['bb'] += contract('bc,ijac->ijab', self.fb[self.nob:, self.nob:], x['bb'])
            Ax['bb'] -= contract('ac,ijbc->ijab', self.fb[self.nob:, self.nob:], x['bb'])
        '''
        Ax['ab'] += contract('bc,ijac->ijab', self.fb[self.nob:, self.nob:], x['ab'])
        Ax['ab'] += contract('ac,ijcb->ijab', self.fa[self.noa:, self.noa:], x['ab'])
        if self.reference != 'rhf':
            Ax['aa'] += contract('bc,ijac->ijab', self.fa[self.noa:, self.noa:], x['aa'])
            Ax['aa'] -= contract('ac,ijbc->ijab', self.fa[self.noa:, self.noa:], x['aa'])
            Ax['bb'] += contract('bc,ijac->ijab', self.fb[self.nob:, self.nob:], x['bb'])
            Ax['bb'] -= contract('ac,ijbc->ijab', self.fb[self.nob:, self.nob:], x['bb'])
        else:
            Ax['aa'] += .5*contract('bc,ijac->ijab', self.fa[self.noa:, self.noa:], x['aa'])
            Ax['aa'] -= .5*contract('ac,ijbc->ijab', self.fa[self.noa:, self.noa:], x['aa'])
            Ax['aa'] += .5*contract('bc,ijac->ijab', self.fb[self.nob:, self.nob:], x['bb'])
            Ax['aa'] -= .5*contract('ac,ijbc->ijab', self.fb[self.nob:, self.nob:], x['bb'])

        #D->D V (Particle, Particle Interaction)

        Ax['aa'] += .5*contract('abcd,ijcd->ijab', self.l_aaaa[self.noa:, self.noa:, self.noa:, self.noa:], x['aa'])
        Ax['ab'] += .5*contract('abcd,ijcd->ijab', self.j_abab[self.noa:, self.nob:, self.noa:, self.nob:], x['ab'])
        Ax['ab'] += .5*contract('abdc,ijdc->ijab', self.j_abab[self.noa:, self.nob:, self.noa:, self.nob:], x['ab'])
        if self.reference != 'rhf':
            Ax['bb'] += .5*contract('abcd,ijcd->ijab', self.l_bbbb[self.nob:, self.nob:, self.nob:, self.nob:], x['bb'])
        '''
        Ax['ab'] += .5*contract('abcd,ijcd->ijab', self.j_abab[self.noa:, self.nob:, self.noa:, self.nob:], x['ab'])
        Ax['ab'] += .5*contract('abdc,ijdc->ijab', self.j_abab[self.noa:, self.nob:, self.noa:, self.nob:], x['ab'])
        if self.reference != 'rhf':
            Ax['aa'] += .5*contract('abcd,ijcd->ijab', self.l_aaaa[self.noa:, self.noa:, self.noa:, self.noa:], x['aa'])
            Ax['bb'] += .5*contract('abcd,ijcd->ijab', self.l_bbbb[self.nob:, self.nob:, self.nob:, self.nob:], x['bb'])
        else: 
            Ax['aa'] += .5*.5*contract('abcd,ijcd->ijab', self.l_aaaa[self.noa:, self.noa:, self.noa:, self.noa:], x['aa'])
            Ax['aa'] += .5*.5*contract('abcd,ijcd->ijab', self.l_bbbb[self.nob:, self.nob:, self.nob:, self.nob:], x['bb'])
        '''
        #D->D V (Hole, Hole Interaction)

        Ax['aa'] += .5*contract('ijkl,klab->ijab', self.l_aaaa[:self.noa, :self.noa, :self.noa, :self.noa], x['aa'])
        Ax['ab'] += .5*contract('ijkl,klab->ijab', self.j_abab[:self.noa, :self.nob, :self.noa, :self.nob], x['ab'])
        Ax['ab'] += .5*contract('ijlk,lkab->ijab', self.j_abab[:self.noa, :self.nob, :self.noa, :self.nob], x['ab'])
        if self.reference !=  'rhf':
            Ax['bb'] += .5*contract('ijkl,klab->ijab', self.l_bbbb[:self.nob, :self.nob, :self.nob, :self.nob], x['bb'])
        '''
        Ax['ab'] += .5*contract('ijkl,klab->ijab', self.j_abab[:self.noa, :self.nob, :self.noa, :self.nob], x['ab'])
        Ax['ab'] += .5*contract('ijlk,lkab->ijab', self.j_abab[:self.noa, :self.nob, :self.noa, :self.nob], x['ab'])
        if self.reference != 'rhf':
            Ax['aa'] += .5*contract('ijkl,klab->ijab', self.l_aaaa[:self.noa, :self.noa, :self.noa, :self.noa], x['aa'])
            Ax['bb'] += .5*contract('ijkl,klab->ijab', self.l_bbbb[:self.nob, :self.nob, :self.nob, :self.nob], x['bb'])
        else: 
            Ax['aa'] += .5*.5*contract('ijkl,klab->ijab', self.l_aaaa[:self.noa, :self.noa, :self.noa, :self.noa], x['aa'])
            Ax['aa'] += .5*.5*contract('ijkl,klab->ijab', self.l_bbbb[:self.nob, :self.nob, :self.nob, :self.nob], x['bb'])
        '''  
        #D->D V (Hole, Particle Interaction)
        '''
        Ax['aa'] -= contract('akcj,ikcb->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
        Ax['aa'] += contract('bkcj,ikca->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
        Ax['aa'] += contract('akci,jkcb->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
        Ax['aa'] -= contract('bkci,jkca->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])

        Ax['aa'] -= contract('akjc,ikbc->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
        Ax['aa'] += contract('bkjc,ikac->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
        Ax['aa'] += contract('akic,jkbc->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
        Ax['aa'] -= contract('bkic,jkac->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])

        Ax['ab'] -= contract('akcj,ikcb->ijab', self.j_abab[self.noa:, :self.nob, self.noa:, :self.nob], x['ab'])
        Ax['ab'] -= contract('kbcj,ikca->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['aa'])
        Ax['ab'] += contract('akic,kjcb->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['bb'])
        Ax['ab'] -= contract('kbic,kjac->ijab', self.j_abab[:self.noa, self.nob:, :self.noa, self.nob:], x['ab'])
        Ax['ab'] += contract('kbcj,ikac->ijab', self.l_bbbb[:self.nob, self.nob:, self.nob:, :self.nob], x['ab'])
        Ax['ab'] -= contract('akci,kjcb->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['ab'])

        if self.reference != 'rhf': 
            Ax['bb'] -= contract('akcj,ikcb->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['bb'] += contract('bkcj,ikca->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['bb'] += contract('akci,jkcb->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['bb'] -= contract('bkci,jkca->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])

            Ax['bb'] -= contract('kacj,kicb->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['bb'] += contract('kbcj,kica->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['bb'] += contract('kaci,kjcb->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['bb'] -= contract('kbci,kjca->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
        '''
        Ax['ab'] -= contract('akcj,ikcb->ijab', self.j_abab[self.noa:, :self.nob, self.noa:, :self.nob], x['ab'])
        Ax['ab'] -= contract('kbcj,ikca->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['aa'])
        Ax['ab'] += contract('akic,kjcb->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['bb'])
        Ax['ab'] -= contract('kbic,kjac->ijab', self.j_abab[:self.noa, self.nob:, :self.noa, self.nob:], x['ab'])
        Ax['ab'] += contract('kbcj,ikac->ijab', self.l_bbbb[:self.nob, self.nob:, self.nob:, :self.nob], x['ab'])
        Ax['ab'] -= contract('akci,kjcb->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['ab'])
        if self.reference != 'rhf':
            Ax['aa'] -= contract('akcj,ikcb->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
            Ax['aa'] += contract('bkcj,ikca->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
            Ax['aa'] += contract('akci,jkcb->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
            Ax['aa'] -= contract('bkci,jkca->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])

            Ax['aa'] -= contract('akjc,ikbc->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
            Ax['aa'] += contract('bkjc,ikac->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
            Ax['aa'] += contract('akic,jkbc->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
            Ax['aa'] -= contract('bkic,jkac->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
        
            Ax['bb'] -= contract('akcj,ikcb->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['bb'] += contract('bkcj,ikca->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['bb'] += contract('akci,jkcb->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['bb'] -= contract('bkci,jkca->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])

            Ax['bb'] -= contract('kacj,kicb->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['bb'] += contract('kbcj,kica->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['bb'] += contract('kaci,kjcb->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['bb'] -= contract('kbci,kjca->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
        else:
            Ax['aa'] -= .5*contract('akcj,ikcb->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
            Ax['aa'] += .5*contract('bkcj,ikca->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
            Ax['aa'] += .5*contract('akci,jkcb->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])
            Ax['aa'] -= .5*contract('bkci,jkca->ijab', self.l_aaaa[self.noa:, :self.noa, self.noa:, :self.noa], x['aa'])

            Ax['aa'] -= .5*contract('akjc,ikbc->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
            Ax['aa'] += .5*contract('bkjc,ikac->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
            Ax['aa'] += .5*contract('akic,jkbc->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
            Ax['aa'] -= .5*contract('bkic,jkac->ijab', self.j_abab[self.noa:, :self.nob, :self.noa, self.nob:], x['ab'])
        
            Ax['aa'] -= .5*contract('akcj,ikcb->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['aa'] += .5*contract('bkcj,ikca->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['aa'] += .5*contract('akci,jkcb->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])
            Ax['aa'] -= .5*contract('bkci,jkca->ijab', self.l_bbbb[self.nob:, :self.nob, self.nob:, :self.nob], x['bb'])

            Ax['aa'] -= .5*contract('kacj,kicb->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['aa'] += .5*contract('kbcj,kica->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['aa'] += .5*contract('kaci,kjcb->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
            Ax['aa'] -= .5*contract('kbci,kjca->ijab', self.j_abab[:self.noa, self.nob:, self.noa:, :self.nob], x['ab'])
           
  
        Ax = at.collapse_tensor(Ax, self)
        Ax = at.concatenate_amps(Ax, self)

        return Ax
Beispiel #9
0
    def __init__(self, geometry, basis, reference, **kwargs):
        import psi4
        self.optimize = False
        self.scf = False
        self.mp2 = False
        self.bfgs_ic3epa = False
        self.ccsd = False
        self.cepa1 = False
        self.ccsdpt = False
        self.cepa0 = False
        self.shucc = False
        self.lam_cepa = None
        self.lccd = False
        self.acpf = False
        self.psi_acpf = False
        self.psi_aqcc = False
        self.psi_cepa0 = False
        self.olccd_iters = 50
        self.uacpf = False
        self.aqcc = False
        self.uaqcc = False
        self.run_ic3epa = False
        self.ocepa = False
        self.fci = False
        self.d_convergence = 1e-6
        self.r_convergence = 1e-5
        self.run_svd = False
        self.sys_name = "Unnamed system:"
        self.ucc3 = False
        self.tol = 1e-14
        self.log_file = 'out.dat'
        self.mem = '24GB'
        for key, value in kwargs.items():
            setattr(self, key, value)
        try:
            assert reference == 'rhf' or reference == 'uhf'
        except:
            print("Only \"rhf\" or \"uhf\" allowed.")
            exit()
        self.reference = reference
        print(self.sys_name)

        psi4.geometry(geometry)
        #psi4.core.be_quiet()
        psi4.core.clean()
        if os.path.exists(self.log_file):
            cha = 'a'
        else:
            cha = 'w'
        log = open(self.log_file, cha)
        log.write(self.sys_name)  

        psi4.set_memory(self.mem)
        if self.optimize != False:
            
            psi4.set_options({'reference': self.reference, 'scf_type': 'pk', 'g_convergence': 'GAU_TIGHT', 'd_convergence': self.d_convergence})

            psi4.set_options({'opt_coordinates': self.optimize, 'geom_maxiter': 500, 'mp2_type': 'conv'})
            #Some intermediates tweaked to converge problem systems, final optimization obviously kept the same.
            #E, wfnopt = psi4.optimize('scf/6-311G(d,p)', return_wfn = True)
            #E, wfnopt = psi4.optimize('mp2/6-311G(d,p)', return_wfn = True)
            E, wfnopt = psi4.optimize('b3lyp/6-311G(d,p)', return_wfn = True)
            log.write((wfnopt.molecule().create_psi4_string_from_molecule()))

        psi4.set_options({'reference': reference, 'basis': basis, 'd_convergence': self.d_convergence, 'scf_type': 'pk', 'r_convergence': self.r_convergence, 'maxiter': 100, 'cc_type': 'conv', 'mo_maxiter': self.mo_maxiter})

        self.hf_energy, wfn = psi4.energy('scf', return_wfn = True)
        if self.scf == True:
            print("HF energy:".ljust(30)+("{0:20.16f}".format(self.hf_energy)))
        if self.mp2 == True:
            print("MP2 energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('mp2'))))   
        if self.ccsd == True:
            print("CCSD energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('ccsd'))))   
        if self.ccsdpt == True:
            print("CCSD(T) energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('ccsd(t)'))))   
        if self.lccd == True:
            print("LCCD energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('lccd'))))   
        if self.cepa1 == True and self.reference == 'rhf':
            print("CEPA(1) energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('cepa(1)'))))   
        if self.ocepa == True:
            print("OCEPA energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('olccd'))))   

        if self.fci == True:
            print("FCI energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('fci'))))   

        if self.psi_acpf == True:
            print("ACPF energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('acpf'))))
        
        if self.psi_aqcc == True:
            print("AQCC energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('aqcc'))))

        if self.psi_cepa0 == True:
            print("CEPA(0) energy:".ljust(30)+("{0:20.16f}".format(psi4.energy('cepa(0)'))))

        mints = psi4.core.MintsHelper(wfn.basisset())
        ca = wfn.Ca()
        cb = wfn.Cb()
        self.fa = wfn.Fa()
        self.fb = wfn.Fb()
        self.j_aaaa = np.array(mints.mo_eri(ca, ca, ca, ca))
        self.j_abab = np.array(mints.mo_eri(ca, ca, cb, cb))
        self.j_baba = np.array(mints.mo_eri(cb, cb, ca, ca))
        self.j_bbbb = np.array(mints.mo_eri(cb, cb, cb, cb))
        self.fa.transform(ca)
        if reference != 'rhf':
            self.fb.transform(cb)
        self.fa = np.array(self.fa)
        self.fb = np.array(self.fb)

        self.j_aaaa = self.j_aaaa.swapaxes(1, 2)
        self.j_abab = self.j_abab.swapaxes(1, 2)
        self.j_baba = self.j_baba.swapaxes(1, 2)
        self.j_bbbb = self.j_bbbb.swapaxes(1, 2)
        k_aaaa = copy.copy(self.j_aaaa)
        k_bbbb = copy.copy(self.j_bbbb)
        k_aaaa = k_aaaa.swapaxes(2, 3)
        k_bbbb = k_bbbb.swapaxes(2, 3)
        self.l_aaaa = self.j_aaaa - k_aaaa
        self.l_bbbb = self.j_bbbb - k_bbbb
        self.noa = wfn.Ca_subset("AO", "ACTIVE_OCC").shape[1]
        self.nob = wfn.Cb_subset("AO", "ACTIVE_OCC").shape[1]
        self.nva = wfn.Ca_subset("AO", "ACTIVE_VIR").shape[1]
        self.nvb = wfn.Cb_subset("AO", "ACTIVE_VIR").shape[1]
        self.aopairs = np.triu_indices(self.noa, k=1)
        self.avpairs = np.triu_indices(self.nva, k=1)
        self.bopairs = np.triu_indices(self.nob, k=1)
        self.bvpairs = np.triu_indices(self.nvb, k=1)
        psi4.core.clean()
        self.b = self.cepa_b()
        self.b = at.collapse_tensor(self.b, self)
        self.b = at.concatenate_amps(self.b, self)
        if self.cepa0 == True:
            cepa = self.cepa()
            print("CEPA(0) energy:".ljust(30)+("{0:20.16f}".format(cepa)))   
        if self.acpf == True:
            self.s2_term = False
            self.shift = 'acpf'            
            acpf = self.shifted_cepa()
            print("ACPF energy:".ljust(30)+("{0:20.16f}".format(acpf)))   

        if self.aqcc == True:
            self.s2_term = False
            self.shift = 'aqcc'            
            aqcc = self.shifted_cepa()
            print("AQCC energy:".ljust(30)+("{0:20.16f}".format(aqcc)))   

        if self.shucc == True:
            self.lam = 1
            c3epa = self.c3epa()
            print("UCC-2 energy:".ljust(30)+("{0:20.16f}".format(c3epa)))   
        '''
        if self.ucc3 == True:
            self.lam = 1
            b = self.b
            x = 0*b
            #res = scipy.optimize.minimize(self.ucc3_energy, x, jac = self.ucc3_gradient, method = 'bfgs', options = {'gtol': 1e-5, 'disp': True})
            #res = scipy.optimize.minimize(self.ucc3_energy, x, jac = self.numerical_ucc3_gradient, method = 'bfgs', options = {'gtol': 1e-5, 'disp': True})
            res = scipy.optimize.minimize(self.ucc3_energy, x, jac = None, method = 'bfgs', options = {'gtol': 1e-9, 'disp': True})
            print("UCC(3) energy:".ljust(30)+("{0:20.16f}".format(res.fun)))
            self.x = res.x
            x = res.x
            self.shift = 'ucc3'
            if self.reference == 'rhf':
                x2 = at.rhf_to_uhf(x, self)
                shift = []
                for i in range(0, len(x2)):
                    shift.append(x2[i]**2)
                shift = np.array(shift)
                shift = at.uhf_to_rhf(shift, self)
            else:
                shift = []
                for i in range(0, len(x)):
                    shift.append(x[i]**2)
                shift = np.array(shift)
            #print('shift')
            #print(shift)
            #print('gradient')
            #print(self.shifted_A(x)+self.b)
        '''
        if self.lam_cepa != None:
            self.lam = self.lam_cepa
            c3epa = self.c3epa()
            print("λ-C3EPA energy:".ljust(30)+("{0:20.16f}".format(c3epa)))   
        if self.run_ic3epa == True:
            self.lam = 0
            c3epa = self.ic3epa()
            #print("IC3EPA energy:".ljust(30)+("{0:20.16f}".format(c3epa)))   
        if self.uacpf == True:
            self.s2_term = True
            self.shift = 'acpf'            
            uacpf = self.shifted_cepa()
            print("UACPF energy:".ljust(30)+("{0:20.16f}".format(uacpf)))   
        if self.uaqcc == True:
            self.s2_term = True
            self.shift = 'aqcc'            
            uaqcc = self.shifted_cepa()
            print("UAQCC energy:".ljust(30)+("{0:20.16f}".format(uaqcc)))   
         
        if self.ucc3 == True:
            self.lam = 1
            self.shift = 'ucc3'            
            ucc3 = self.shifted_cepa()
            print("UCC(3) energy:".ljust(30)+("{0:20.16f}".format(ucc3)))   

        if self.bfgs_ic3epa == True:
            b = self.cepa_b()
            b = at.collapse_tensor(b, self)
            b = at.concatenate_amps(b, self)
            x = 0*b
            res = scipy.optimize.minimize(self.bfgs_ic3epa_energy, x, method = 'bfgs', options = {'gtol': 1e-10})
            print("Variational IC3EPA energy:".ljust(30)+("{0:20.16f}".format(self.bfgs_ic3epa_energy(res.x))))