def test_pir_to_xy_APIequalsALLENSDK(self, dataset_id, p, i, r):
"""Test that manually extracted requests equals official Allen's package result.
Notes
-----
The official package is called AllenSDK, see https://github.com/AllenInstitute/AllenSDK.
"""
x, y, section_number, closest_section_image_id = pir_to_xy_API_single(
p, i, r, dataset_id=dataset_id
)
sync_api = SynchronizationApi()
r = sync_api.get_reference_to_image(9, p, i, r, [dataset_id])[0]["image_sync"]
x_s, y_s, section_number_s, closest_section_image_id_s = (
r["x"],
r["y"],
r["section_number"],
r["section_image_id"],
)
assert x == x_s
assert y == y_s
assert section_number == section_number_s
assert closest_section_image_id == closest_section_image_id_s
def synch():
sa = SynchronizationApi()
sa.json_msg_query = MagicMock(name='json_msg_query')
return sa
class SynchronizationApiTests(unittest.TestCase):
def __init__(self, *args, **kwargs):
super(SynchronizationApiTests, self).__init__(*args, **kwargs)
self.ida = None
def setUp(self):
self.sa = SynchronizationApi()
def tearDown(self):
self.ida = None
def test_image_to_image(self):
'''
Notes
-----
Expected link is slightly modified for json and float serialization of zeros.
See: `Image Alignment `<http://help.brain-map.org/display/mouseconnectivity/API#API-ImageAlignment>_
, link labeled 'Sync a VISp and VISal experiment to a location in a SCs SectionDataSet'.
'''
expected = 'http://api.brain-map.org/api/v2/image_to_image/114754496.json?x=18232.000000&y=10704.000000§ion_data_set_ids=113887162,116903968'
self.sa.json_msg_query = \
MagicMock(name='json_msg_query')
section_image_id = 114754496
(x, y) = (18232, 10704)
section_data_set_ids = [113887162, 116903968]
_ = self.sa.get_image_to_image(section_image_id,
x, y,
section_data_set_ids)
self.sa.json_msg_query.assert_called_once_with(expected)
def test_image_to_image_2d(self):
expected = 'http://api.brain-map.org/api/v2/image_to_image_2d/68173101.json?x=6208.000000&y=2368.000000§ion_image_ids=68173103,68173105,68173107'
self.sa.json_msg_query = \
MagicMock(name='json_msg_query')
section_image_id = 68173101
(x, y) = (6208, 2368)
section_image_ids = [68173103, 68173105, 68173107]
_ = self.sa.get_image_to_image_2d(section_image_id,
x, y,
section_image_ids)
self.sa.json_msg_query.assert_called_once_with(expected)
def test_reference_to_image(self):
expected = 'http://api.brain-map.org/api/v2/reference_to_image/10.json?x=6085.000000&y=3670.000000&z=4883.000000§ion_data_set_ids=68545324,67810540'
self.sa.json_msg_query = \
MagicMock(name='json_msg_query')
reference_space_id = 10
(x, y, z) = (6085, 3670, 4883)
section_data_set_ids = [68545324, 67810540]
_ = self.sa.get_reference_to_image(reference_space_id,
x, y, z,
section_data_set_ids)
self.sa.json_msg_query.assert_called_once_with(expected)
def test_image_to_reference(self):
expected = 'http://api.brain-map.org/api/v2/image_to_reference/68173101.json?x=6208.000000&y=2368.000000'
self.sa.json_msg_query = \
MagicMock(name='json_msg_query')
section_image_id = 68173101
(x, y) = (6208, 2368)
_ = self.sa.get_image_to_reference(section_image_id,
x, y)
self.sa.json_msg_query.assert_called_once_with(expected)
def test_structure_to_image(self):
expected = 'http://api.brain-map.org/api/v2/structure_to_image/68545324.json?structure_ids=315,698,1089,703,477,803,512,549,1097,313,771,354'
self.sa.json_msg_query = \
MagicMock(name='json_msg_query')
section_data_set_id = 68545324
structure_ids = [315,698,1089,703,477,803,512,549,1097,313,771,354]
_ = self.sa.get_structure_to_image(section_data_set_id,
structure_ids)
self.sa.json_msg_query.assert_called_once_with(expected)
def test_image_to_atlas(self):
'''
Notes
-----
Expected link is slightly modified for json and float serialization of zeros.
See: `Image Alignment `<http://help.brain-map.org/display/mouseconnectivity/API#API-ImageAlignment>_
, link labeled 'Sync the P56 coronal reference atlas to a location in the SCs SectionDataSet'.
'''
expected = 'http://api.brain-map.org/api/v2/image_to_atlas/114754496.json?x=18232.000000&y=10704.000000&atlas_id=1'
self.sa.json_msg_query = \
MagicMock(name='json_msg_query')
section_image_id = 114754496
(x, y) = (18232, 10704)
atlas_id = 1
_ = self.sa.get_image_to_atlas(section_image_id,
x, y,
atlas_id)
self.sa.json_msg_query.assert_called_once_with(expected)
def synch():
sa = SynchronizationApi()
sa.json_msg_query = MagicMock(name='json_msg_query')
return sa
def setUp(self):
self.sa = SynchronizationApi()
