def draw_net(self, prefix, net,
graph_type=GraphType.GENE_SIGNAL,
knockouts=True,
target=None,
with_dot=False):
ana = NetworkAnalysis(net)
ana.annotate(target)
g = get_graph_by_type(graph_type, ana, knockouts=knockouts)
d = DotMaker(g)
p = self.analysis_path / '{}-G{:07d}-N{:02d}-F{}.png'.format(
prefix, net.generation, net.identifier, net.fitness)
log.info("Writing {}".format(str(p)))
d.save_picture(str(p))
if with_dot:
d.save_dot(str(p.with_suffix('.dot')))
def save_network_as_fullgraph(net, path='.', name=None,
simplify=True,
graph_type=GraphType.GENE_SIGNAL,
target=None,
with_dot=False):
if not isinstance(path, pathlib.Path):
path = pathlib.Path(path)
ana = NetworkAnalysis(net)
ana.annotate(target)
g = get_graph_by_type(graph_type, ana, knockouts=simplify)
d = DotMaker(g)
if name is None:
name = str(net.identifier)
path = path / name
d.save_picture(str(path.with_suffix('.png')))
if with_dot:
d.save_dot(str(path.with_suffix('.dot')))
return path
