def test_analysis_calls_galaxy_file_import(self,
galaxy_file_import_state_mock):
request = self.request_factory.get(self.status_url_root,
content_type="application/json")
request.user = self.user
analysis_status(request, self.analysis.uuid)
self.assertTrue(galaxy_file_import_state_mock.called)
def test_analysis_calls_galaxy_file_import(
self,
galaxy_file_import_state_mock
):
request = self.request_factory.get(self.status_url_root,
content_type="application/json")
request.user = self.user
analysis_status(request, self.analysis.uuid)
self.assertTrue(galaxy_file_import_state_mock.called)
def test_tool_analysis_calls_tool_based_galaxy_file_import_state(
self,
file_import_state_mock
):
self.create_valid_tool(ToolDefinition.WORKFLOW)
self.status_url_root = "/analysis_manager/{}/".format(
self.tool.analysis.uuid
)
request = self.request_factory.get(
self.status_url_root,
content_type="application/json",
HTTP_X_REQUESTED_WITH='XMLHttpRequest'
)
request.user = self.user
response = analysis_status(request, self.tool.analysis.uuid)
self.assertTrue(file_import_state_mock.called)
self.assertEqual(
json.loads(response.content),
{
"galaxyAnalysis": [],
"refineryImport": [],
"galaxyImport": "coffee",
"overall": "INITIALIZED",
"galaxyExport": []
}
)
def test_analysis_returns_galaxy_file_import_state(self, get_status_mock):
request = self.request_factory.get(
self.status_url_root,
content_type="application/json",
)
request.user = self.user
response = analysis_status(request, self.analysis.uuid)
self.assertEqual(
json.loads(response.content), {
"galaxyAnalysis": [],
"refineryImport": [],
"galaxyImport": "SUCCESS",
"overall": "INITIALIZED",
"galaxyExport": []
})
def test_non_tool_analysis_calls_old_galaxy_file_import_state(
self, file_import_state_mock):
request = self.request_factory.get(
self.status_url_root,
content_type="application/json",
HTTP_X_REQUESTED_WITH='XMLHttpRequest')
request.user = self.user
response = analysis_status(request, self.analysis.uuid)
self.assertTrue(file_import_state_mock.called)
self.assertEqual(
json.loads(response.content), {
"galaxyAnalysis": [],
"refineryImport": [],
"galaxyImport": "coffee",
"overall": "INITIALIZED",
"galaxyExport": []
})
def test_analysis_returns_galaxy_file_import_state(
self,
get_status_mock
):
request = self.request_factory.get(
self.status_url_root,
content_type="application/json",
)
request.user = self.user
response = analysis_status(request, self.analysis.uuid)
self.assertEqual(
json.loads(response.content),
{
"galaxyAnalysis": [],
"refineryImport": [],
"galaxyImport": "SUCCESS",
"overall": "INITIALIZED",
"galaxyExport": []
}
)