def test_secmet(self):
self.ref.cdses["A"].components["secmet"] = ["name1", "name2"]
result = components.gather_reference_components(self.ref)
assert result is self.ref._components is self.ref.get_component_data()
assert components.gather_reference_components(self.ref) is result
assert result.secmet == {"name1": 1, "name2": 1}
assert not any([result.functions, result.nrps, result.pks])
def test_pks(self):
module1 = {
"complete": True,
"type": "pks",
"domains": ["PKS_KS", "AT", "PP-binding"],
}
module2 = {
"complete": False,
"type": "pks",
"domains": ["AT", "PP-binding"],
}
self.ref.cdses["A"].components["modules"] = [module1, module2]
result = components.gather_reference_components(self.ref)
assert result.pks == {tuple(module1["domains"]): 1}
assert not any([result.functions, result.secmet, result.nrps])
def test_function(self):
self.ref.cdses["A"].function = "biosynthetic"
result = components.gather_reference_components(self.ref)
assert result.functions == {"biosynthetic": 1}
assert not any([result.pks, result.secmet, result.nrps])
def test_empty(self):
result = components.gather_reference_components(self.ref)
assert result is self.ref._components is self.ref.get_component_data()
assert components.gather_reference_components(self.ref) is result
assert result == components.Components({}, {}, {}, {})