def test_non_standard(self):
hit = ">CVNH01000008|c1|65549-69166|-|BN1184_AH_00620|Urea_carboxylase_{ECO:0000313|EMBL:CCF11062.1}|CRH36422"
with unittest_mock.patch("builtins.open", self.mock_with(hit)):
proteins = core.load_reference_proteins(set(), "clusterblast")
assert len(proteins) == 1
protein = proteins["CRH36422"]
assert protein.name == "CRH36422"
assert protein.annotations == "Urea_carboxylase_{ECO:0000313|EMBL:CCF11062.1}"
def _check_proteins_match_clusters(self, searchtype):
clusters = core.load_reference_clusters(searchtype)
proteins = core.load_reference_proteins(searchtype)
for cluster in clusters.values():
for protein in cluster.tags:
assert protein in proteins, "missing: %s" % protein
