def _load(self, p=None):
'''
files ending with .txt loaded as text
otherwise unpickled
'''
if p is None:
p = self.path
else:
self.path = p
self.steps = []
if p.endswith('.txt'):
# load a text file
for args in parse_file(p, delimiter=','):
if len(args) == 2:
self.steps.append(ExtractStep(extract_value=float(args[0]),
duration=float(args[1])
))
elif len(args) == 4:
for i in range(*map(int, args[:3])):
self.steps.append(ExtractStep(extract_value=float(i),
duration=float(args[3])
))
else:
with open(p, 'rb') as f:
try:
self.steps = pickle.load(f)
except Exception:
pass
def _selected_changed(self, new):
if new:
obj = None
p = os.path.join(self.persistence_root, '{}.p'.format(new.lower()))
if os.path.isfile(p):
try:
with open(p, 'r') as rfile:
obj = pickle.load(rfile)
except BaseException:
pass
if obj is None:
obj = self.options_klass()
obj.initialize()
obj.name = new
self.subview_names = obj.subview_names
self.selected_options = obj
o = self.selected_subview
if not o:
o = 'Main'
self.selected_subview = ''
self.selected_subview = o
else:
self.selected_options = None
def load(file_or_path):
""" Unpickle the context from a file
Parameters
----------
file_or_path : str or readable filelike object
Returns
-------
context : object
"""
if hasattr(file_or_path, 'read'):
# Already a readable file object.
should_close = False
file_object = file_or_path
else:
# Open the file.
should_close = True
file_object = file(file_or_path, 'rb')
try:
data_context = sweet_pickle.load(file_object)
finally:
if should_close:
file_object.close()
return data_context
def load(file_or_path):
""" Unpickle the context from a file
Parameters
----------
file_or_path : str or readable filelike object
Returns
-------
context : object
"""
if hasattr(file_or_path, 'read'):
# Already a readable file object.
should_close = False
file_object = file_or_path
else:
# Open the file.
should_close = True
file_object = file(file_or_path, 'rb')
try:
data_context = sweet_pickle.load(file_object)
finally:
if should_close:
file_object.close()
return data_context
def check(self):
'''
'''
local_info = None
major = None
minor = None
# get the local version info
if os.path.isfile(self.local_path):
with open(self.local_path, 'rb') as f:
local_info = pickle.load(f)
if os.path.isfile(self.src_path):
# get the version_info associated with the src code
with open(self.src_path, 'rb') as f:
f.readline()
line = f.readline()
major = line.split('=')[1].strip()
line = f.readline()
minor = line.split('=')[1].strip()
self.version_info = VersionInfo(major=major,
minor=minor)
f.readline()
p = []
ps = []
new_para = False
for line in f:
line = line.strip()
if new_para:
ps.append(p)
p = []
new_para = False
if len(line) > 0:
if len(p) == 0 and line[0] == '#':
line = '<h5><u>{}</u></h5>'.format(line[1:])
p.append(line)
else:
new_para = True
self.version_info.text = \
''.join(['<p>{}</p>'.format(pj) for pj in
[' '.join(pi) for pi in ps if len(pi) > 0]])
if minor is not None and major is not None:
mismatch = True
if local_info is not None:
mismatch = local_info.version != '.'.join((major,
minor))
if mismatch:
if local_info is not None:
self.local_version = local_info.version
elif local_info is None:
do_later(self.edit_traits, kind='modal')
def _selected_changed(self, new):
if new:
obj = None
p = os.path.join(self.persistence_root, '{}.p'.format(new.lower()))
if os.path.isfile(p):
try:
with open(p, 'r') as rfile:
obj = pickle.load(rfile)
except BaseException:
pass
if obj is None:
obj = self.options_klass()
obj.initialize()
obj.name = new
self.subview_names = obj.subview_names
self.selected_options = obj
o = self.selected_subview
if not o:
o = 'Main'
self.selected_subview = ''
self.selected_subview = o
else:
self.selected_options = None
def _load_pulse(self, p):
with open(p, 'rb') as f:
try:
pul = pickle.load(f)
pul.manager = self
return pul
except Exception, e:
self.debug('load pulse problem {} {}'.format(p, e))
def check(self):
'''
'''
local_info = None
major = None
minor = None
# get the local version info
if os.path.isfile(self.local_path):
with open(self.local_path, 'rb') as f:
local_info = pickle.load(f)
if os.path.isfile(self.src_path):
# get the version_info associated with the pychron code
with open(self.src_path, 'rb') as f:
f.readline()
line = f.readline()
major = line.split('=')[1].strip()
line = f.readline()
minor = line.split('=')[1].strip()
self.version_info = VersionInfo(major=major, minor=minor)
f.readline()
p = []
ps = []
new_para = False
for line in f:
line = line.strip()
if new_para:
ps.append(p)
p = []
new_para = False
if len(line) > 0:
if len(p) == 0 and line[0] == '#':
line = '<h5><u>{}</u></h5>'.format(line[1:])
p.append(line)
else:
new_para = True
self.version_info.text = \
''.join(['<p>{}</p>'.format(pj) for pj in
[' '.join(pi) for pi in ps if len(pi) > 0]])
if minor is not None and major is not None:
mismatch = True
if local_info is not None:
mismatch = local_info.version != '.'.join((major, minor))
if mismatch:
if local_info is not None:
self.local_version = local_info.version
elif local_info is None:
do_later(self.edit_traits, kind='modal')
def get(self, name):
p = os.path.join(paths.peak_center_config_dir, add_extension(name, '.p'))
if os.path.isfile(p):
with open(p, 'rb') as rfile:
obj = pickle.load(rfile)
else:
obj = self.item_klass()
return obj
def _load(self, attr, func):
p = os.path.join(paths.hidden_dir, 'series_manager.{}'.format(attr))
if os.path.isfile(p):
try:
with open(p, 'r') as fp:
pobj = pickle.load(fp)
func(pobj, attr)
except pickle.PickleError:
pass
def _load(self, root):
p = os.path.join(root, self.name)
if os.path.isfile(p):
with open(p, 'r') as fp:
try:
obj = pickle.load(fp)
self.trait_set(**obj)
except (pickle.PickleError, TypeError, EOFError, TraitError), e:
print 'error loading {}'.format(self.name), e
def get(self, name):
p = os.path.join(paths.peak_center_config_dir,
add_extension(name, '.p'))
if os.path.isfile(p):
with open(p, 'rb') as rfile:
obj = pickle.load(rfile)
else:
obj = self.item_klass()
return obj
def load(cls, name):
path = cls._get_path(name)
# print os.path.isfile(path), path
if os.path.isfile(path):
with open(path, 'rb') as f:
try:
obj = pickle.load(f)
return obj
except pickle.PickleError, e:
pass
def _load_pid_object(self):
p = os.path.join(paths.hidden_dir, 'brightness_pid_object')
if os.path.isfile(p):
self.info('loading pid object from {}'.format(p))
try:
with open(p, 'rb') as f:
po = pickle.load(f)
except pickle.PickleError, e:
self.info('error loading pid object from {}, {}'.format(p, e))
po = PIDObject()
def _load(self, root):
p = os.path.join(root, self.name)
if os.path.isfile(p):
with open(p, 'r') as fp:
try:
obj = pickle.load(fp)
self.trait_set(**obj)
except (pickle.PickleError, TypeError, EOFError):
pass
def _get_browser_persistence(self):
p = self.selection_persistence_path
# p = os.path.join(paths.hidden_dir, 'browser_selection')
if os.path.isfile(p):
try:
with open(p, 'rb') as fp:
return pickle.load(fp)
except (pickle.PickleError, EOFError, OSError), e:
# self.debug('Failed loaded previous browser selection. {}'.format(e))
pass
def _load_selected_po(self):
p = self.selected_options_path
n = 'Default'
if os.path.isfile(p):
with open(p, 'r') as rfile:
try:
n = pickle.load(rfile)
except (pickle.PickleError, EOFError):
n = 'Default'
return n
def load(cls, name):
path = cls._get_path(name)
# print os.path.isfile(path), path
if os.path.isfile(path):
with open(path, 'rb') as f:
try:
obj = pickle.load(f)
return obj
except pickle.PickleError, e:
pass
def _load_selected_po(self):
p = self.selected_options_path
n = 'Default'
if os.path.isfile(p):
with open(p, 'r') as rfile:
try:
n = pickle.load(rfile)
except (pickle.PickleError, EOFError):
n = 'Default'
return n
def __init__(self, *args, **kw):
super(FindAssociatedParametersDialog, self).__init__(*args, **kw)
p = os.path.join(paths.hidden_dir, 'find_associated_parameters_dialog')
if os.path.isfile(p):
with open(p, 'r') as fp:
try:
self.model = pickle.load(fp)
except (pickle.PickleError, AttributeError, OSError, EOFError):
pass
if not self.model:
self.model = FindAssociatedParametersModel()
def _load_pattern(self, fileobj, path):
'''
unpickle fileobj as a pattern
'''
try:
obj = pickle.load(fileobj)
self.pattern = obj
self.pattern.path = path
return obj
except (pickle.PickleError, Exception), e:
self.debug('load pattern:{}'.format(e))
def _load_detector(self, name, klass):
p = path.join(paths.hidden_dir, name)
if path.isfile(p):
with open(p, 'rb') as f:
try:
hd = pickle.load(f)
if not isinstance(hd, klass):
hd = klass()
except Exception, e:
print e
def load_browser_selection(self):
#self.debug('$$$$$$$$$$$$$$$$$$$$$ Loading browser selection')
p = os.path.join(paths.hidden_dir, 'browser_selection')
if os.path.isfile(p):
try:
with open(p, 'rb') as fp:
sel = pickle.load(fp)
except (pickle.PickleError, EOFError, OSError), e:
#self.debug('Failed loaded previous browser selection. {}'.format(e))
return
self._load_browser_selection(sel)
def __init__(self, *args, **kw):
super(TableSelectionDialog, self).__init__(*args, **kw)
p = os.path.join(paths.hidden_dir, 'table_selection_dialog')
if os.path.isfile(p):
with open(p, 'r') as fp:
try:
self.model = pickle.load(fp)
except (pickle.PickleError, AttributeError, OSError, EOFError):
pass
if not self.model:
self.model=TableSelectionModel()
def _peak_center_config_default(self):
config = None
p = os.path.join(paths.hidden_dir, 'peak_center_config')
if os.path.isfile(p):
try:
with open(p) as fp:
config = pickle.load(fp)
config.detectors = dets = self.spectrometer.detectors
config.detector = next((di for di in dets if di.name == config.detector_name), None)
except Exception, e:
print 'peak center config', e
def _pulse_default(self):
p = os.path.join(paths.hidden_dir, 'pulse')
if os.path.isfile(p):
with open(p, 'rb') as f:
try:
pul = pickle.load(f)
pul.manager = self
except pickle.PickleError:
pul = Pulse(manager=self)
else:
pul = Pulse(manager=self)
return pul
def _load_pattern(self, fileobj, path):
'''
unpickle fileobj as a pattern
'''
try:
obj = pickle.load(fileobj)
self.pattern = obj
self.pattern.path = path
return obj
except (pickle.PickleError, Exception), e:
import traceback
traceback.print_exc()
self.debug('load pattern:{}'.format(e))
def _peak_center_config_default(self):
config = None
p = os.path.join(paths.hidden_dir, 'peak_center_config')
if os.path.isfile(p):
try:
with open(p) as fp:
config = pickle.load(fp)
config.detectors = dets = self.spectrometer.detectors
config.detector = next(
(di for di in dets if di.name == config.detector_name),
None)
except Exception, e:
print 'peak center config', e
def _load_parameters(self, p):
pa = None
if os.path.isfile(p):
with open(p, 'rb') as f:
try:
pa = pickle.load(f)
except (pickle.PickleError, EOFError):
pass
klass = self.parameters_klass
if pa is None or not isinstance(pa, klass):
pa = klass()
return pa
def _load_parameters(self, p):
pa = None
if os.path.isfile(p):
with open(p, 'rb') as f:
try:
pa = pickle.load(f)
except (pickle.PickleError, EOFError):
pass
klass = self.parameters_klass
if pa is None or not isinstance(pa, klass):
pa = klass()
return pa
def _axis_factory(self, path, **kw):
'''
'''
na = NewportAxis(parent=self,
**kw
)
p = na.load(path)
if p:
with open(p, 'r') as f:
na = pickle.load(f)
na.parent = self
na.loaded = True
return na
def load(self):
for ai in ['calculated_values', 'measured_values',
'baseline_values', 'blank_values', 'background_values']:
self._load(ai, self._load_values)
self._load('peak_center_option', self._load_peak_center)
p = os.path.join(paths.hidden_dir, 'series_manager.traits')
if os.path.isfile(p):
try:
with open(p, 'r') as fp:
dd = pickle.load(fp)
self.trait_set(**dd)
except pickle.PickleError:
pass
def load_visualization(self):
p = self.open_file_dialog()
if p is not None:
with open(p, 'rb') as f:
# try:
d = pickle.load(f)
self.center = d['center']
self.rotation = d['rotation']
for k, v in d['markup'].iteritems():
v.set_canvas(self.canvas)
self.canvas.markupcontainer = d['markup']
def load_visualization(self):
p = self.open_file_dialog()
if p is not None:
with open(p, 'rb') as f:
# try:
d = pickle.load(f)
self.center = d['center']
self.rotation = d['rotation']
for k, v in d['markup'].iteritems():
v.set_canvas(self.canvas)
self.canvas.markupcontainer = d['markup']
def _plotter_options_default(self):
p = os.path.join(self.persistence_root, '{}.default'.format(self.plotter_options_name))
n = 'Default'
if os.path.isfile(p):
with open(p, 'r') as fp:
try:
n = pickle.load(fp)
except (pickle.PickleError, EOFError):
n = 'Default'
po = next((pi for pi in self.plotter_options_list if pi.name == n), None)
if not po:
po = self.plotter_options_list[0]
return po
def load_fits(self):
p = os.path.join(paths.hidden_dir, 'fit_manager.fits')
if os.path.isfile(p):
try:
with open(p, 'rb') as fp:
self.fits = pickle.load(fp)
except (pickle.PickleError, EOFError):
pass
if not self.fits:
self.fits = [Fit(deletable=False,
names=['Ar40', 'Ar39', 'Ar38', 'Ar37', 'Ar36'])]
for fi in self.fits:
fi.do_binding = self.do_fit_binding
def load_state(self, cmpconfigfile):
""" Load CMP Configuration state directly.
Useful if you do not want to invoke the GUI"""
# support the new traits api
try:
import apptools.sweet_pickle as sp
except ImportError:
import enthought.sweet_pickle as sp
output = open(cmpconfigfile, 'rb')
data = sp.load(output)
self.__setstate__(data.__getstate__())
# make sure that dtk_matrices is set
self.dtk_matrices = os.path.join(self.dtk_home, 'matrices')
# update the subject directory
if os.path.exists(self.project_dir):
self.subject_workingdir = os.path.join(self.project_dir, self.subject_name, self.subject_timepoint)
output.close()
def _load_power_maps(self):
p = os.path.join(paths.hidden_dir, 'power_maps')
if os.path.isfile(p):
with open(p, 'rb') as f:
try:
pmc = pickle.load(f)
except Exception:
pmc = [PowerMapping()]
else:
pmc = [PowerMapping()]
for pmi in pmc:
pmi.name = 'PowerMap'
# pmi.laser_manager = self.laser_manager
pmi.parent = self
return pmc
def _plotter_options_default(self):
p = os.path.join(self.persistence_root,
'{}.default'.format(self.plotter_options_name))
n = 'Default'
if os.path.isfile(p):
with open(p, 'r') as fp:
try:
n = pickle.load(fp)
except (pickle.PickleError, EOFError):
n = 'Default'
po = next((pi for pi in self.plotter_options_list if pi.name == n),
None)
if not po:
po = self.plotter_options_list[0]
return po
def load_pattern(self, path=None):
if path is None:
path = self.open_file_dialog(default_directory=paths.pattern_dir)
if path is not None and os.path.isfile(path):
# self.pattern = None
with open(path, 'rb') as f:
try:
p = pickle.load(f)
p.path = path
self.pattern = p
self._kind = self.pattern.__class__.__name__.partition('Pattern')[0]
self.info('loaded {} from {}'.format(self.pattern_name, path))
self.pattern.replot()
except:
if self.confirmation_dialog('Invalid Pattern File {}'.format(path)):
os.remove(path)
else:
self.pattern = None
def load(self, **kw):
names = list_directory2(paths.peak_center_config_dir, remove_extension=True, extension='.p')
if 'Default' not in names:
item = self.item_klass()
item.name = 'Default'
self.dump_item(item)
names = list_directory2(paths.peak_center_config_dir, remove_extension=True, extension='.p')
name = 'Default'
p = os.path.join(paths.hidden_dir, add_extension('config', '.p'))
if os.path.isfile(p):
with open(p, 'rb') as rfile:
obj = pickle.load(rfile)
name = obj.get('name', 'Default')
self.names = names
self.active_name = name
self.active_item.trait_set(**kw)
def load(self, path):
""" Loads an object from a file. """
# Unpickle the object.
f = open(path, 'rb')
try:
try:
obj = sweet_pickle.load(f)
# obj = cPickle.load(f)
# obj = pickle.load(f)
except Exception as ex:
print_exc()
logger.exception("Failed to load pickle file: %s, %s" %
(path, ex))
raise
finally:
f.close()
return obj
def _load(self, root):
p = os.path.join(root, self.name)
if os.path.isfile(p):
with open(p, 'r') as fp:
try:
obj = pickle.load(fp)
self.trait_set(**obj)
except (pickle.PickleError, TypeError, EOFError, TraitError):
pass
klass = self.plot_option_klass
name = self.plot_option_name
if name:
pp = next((p for p in self.aux_plots if p.name == name), None)
if not pp:
po = klass(height=0)
po.trait_set(name=name, trait_change_notfiy=False)
self.aux_plots.append(po)
self.initialize()
def views_factory(self):
'''
'''
# if os.path.exists(picklepath):
uvfs = get_user_views()
if uvfs:
px = []
for pa in uvfs:
with open(pa, 'r') as f:
try:
pi = pickle.load(f)
pi.scene_graph = self.scene_graph
px.append(pi)
except ImportError:
pass
return px
else:
return [
] # UserView(name = 'home', key = 'h', scene_graph = self.scene_graph)]
def load(self, **kw):
names = list_directory2(paths.peak_center_config_dir,
remove_extension=True,
extension='.p')
if 'Default' not in names:
item = self.item_klass()
item.name = 'Default'
self.dump_item(item)
names = list_directory2(paths.peak_center_config_dir,
remove_extension=True,
extension='.p')
name = 'Default'
p = os.path.join(paths.hidden_dir, add_extension('config', '.p'))
if os.path.isfile(p):
with open(p, 'rb') as rfile:
obj = pickle.load(rfile)
name = obj.get('name', 'Default')
self.names = names
self.active_name = name
self.active_item.trait_set(**kw)
def load(self):
'''
'''
if os.path.isfile(self.pickle_path):
with open(self.pickle_path, 'r') as f:
self.history = pickle.load(f)