def build_stage_1():
"""
In stage 1 of generation we:
1. Get the initial HEI Encounters
2. Create a RegistryEntry for each one
3. Calculate the age of the child at HEI presentation for each one
4. Check if the mother is linked
5. Add the obs for the HEI initial encounter
Essentially, we do anything we can that's on the HEI form (except maybe
format the actual defects in the event that there are some). Also, we see
if we can link the mom.
"""
# 1
hei_enc = get_hei_encounters()
# 2
for enc in hei_enc:
entry = RegistryEntry()
entry.site = RegistryEntry.SITE_FACES
entry.child_id = enc.patient_id
entry.cohort_date = enc.encounter_datetime.date()
# TODO May need to add a check to look at the section titled:
# FINAL HEI OUTCOMES AT EXIT
entry.outcome = RegistryEntry.OUTCOME_LIVE
entry.date_of_outcome = enc.patient.patient.birthdate
entry.gender = enc.patient.patient.gender
entry.check_initial_paeds_lookup = True
# 3
entry.age_first_seen = (entry.cohort_date - entry.date_of_outcome).days
# 4
entry.save(using=APR_DB)
mom = get_mom(entry.child_id)
if mom != None:
entry.mother_id = mom
entry.check_mother_linked = True
mom_patient = Patient.objects.using(FACES_OPENMRS_DB).get(pk=entry.mother_id)
for mom_enc in mom_patient.encounter_set.all():
encounter_to_encobs(entry, mom_enc, link_field='mother_entry')
entry.check_added_moms_obs = True
else:
entry.voided = True
entry.voided_reason = RegistryEntry.VOIDED_MOTHER_NOT_LINKED
entry.save(using=APR_DB)
set_mother_values(entry)
# 5
encounter_to_encobs(entry, enc)
entry.check_added_child_obs = True
set_child_values(entry)
entry.save(using=APR_DB)
def set_non_livebirth_entry(outcome_type, enc):
"""
Encounter is the blue card from when the mother had a marked
stillborn/miscarriage etc.
"""
entry = RegistryEntry()
entry.site = RegistryEntry.SITE_FACES
entry.cohort_date = enc.encounter_datetime.date()
entry.outcome = outcome_type
entry.date_of_outcome = enc.encounter_datetime.date()
entry.save(using=APR_DB)
for mom_enc in enc.patient.encounter_set.all():
encounter_to_encobs(entry, mom_enc, link_field='mother_entry')
entry.check_added_moms_obs = True
try:
set_mother_values(entry)
except Patient.DoesNotExist:
entry.voided = True
entry.voided_reason = RegistryEntry.VOIDED_STILLBIRTH_MOTHER_MISSING
entry.save(using=APR_DB)