def parse_upload(upload_id):
db = get_db_from_env()
storage_client = get_storage_client_from_env()
try:
parse_upload_package(upload_id, db, storage_client)
except:
logger.error(traceback.format_exc())
def get_app():
storage_connection_string = os.environ['STORAGE_CONNECTION_STRING']
jwt_secret_key = os.environ['JWT_SECRET_KEY']
aquascope_test_user = os.environ['AQUASCOPE_TEST_USER']
aquascope_test_pass = os.environ['AQUASCOPE_TEST_PASS']
aquascope_secondary_pass = os.environ['AQUASCOPE_SECONDARY_PASS']
environment = os.environ['ENVIRONMENT']
celery_user = os.environ['CELERY_USER']
celery_password = os.environ['CELERY_PASS']
celery_address = os.environ['CELERY_ADDRESS']
page_size = os.environ['PAGE_SIZE'] if 'PAGE_SIZE' in os.environ else 500
db_client, db = get_db_from_env()
app = make_app(db_client, db, storage_connection_string, jwt_secret_key,
aquascope_test_user, aquascope_test_pass, aquascope_secondary_pass,
environment, celery_user, celery_password, celery_address, page_size)
return app
def main():
db_client, db = get_db_from_env(with_create_collections=False)
storage_client = get_storage_client_from_env()
add_upload_id_field_to_items(db, storage_client)
def main():
db_client, db = get_db_from_env(with_create_collections=False)
set_marta_to_modified_by_in_not_null_annotable_fields(db)
def main():
db_client, db = get_db_from_env(with_create_collections=False)
rename_filenames_in_items(db)
def run_populate_system(data_directory):
db_client, db = get_db_from_env()
storage_client = blob_storage_client(
connection_string=os.environ['STORAGE_CONNECTION_STRING'])
populate_system_with_items(data_directory, db, storage_client)
def main():
db = get_db_from_env(with_create_collections=False)
add_modification_fields_to_item_schema(db)
def main():
db = get_db_from_env(with_create_collections=False)
add_tags_field_to_uploads(db)
def main():
db_client, db = get_db_from_env(with_create_collections=False)
add_tags_field_to_items(db)
