def createFileSec(directoryPath, structMapDiv):
global fileNameToFileID
global trimStructMap
global trimStructMapObjects
global globalDmdSecCounter
global globalAmdSecCounter
global globalDigiprovMDCounter
global dmdSecs
global amdSecs
delayed = []
filesInThisDirectory = []
dspaceMetsDMDID = None
directoryContents = os.listdir(directoryPath)
directoryContentsTuples = []
for item in directoryContents:
itemdirectoryPath = os.path.join(directoryPath, item)
if os.path.isdir(itemdirectoryPath):
delayed.append(item)
elif os.path.isfile(itemdirectoryPath):
#find original file name
directoryPathSTR = itemdirectoryPath.replace(
baseDirectoryPath, baseDirectoryPathString, 1)
sql = """SELECT Related.originalLocation AS 'derivedFromOriginalLocation',
Current.originalLocation
FROM Files AS Current
LEFT OUTER JOIN Derivations ON Current.fileUUID = Derivations.derivedFileUUID
LEFT OUTER JOIN Files AS Related ON Derivations.sourceFileUUID = Related.fileUUID
WHERE Current.removedTime = 0 AND Current.%s = '%s'
AND Current.currentLocation = '%s';""" % (
fileGroupType, fileGroupIdentifier,
MySQLdb.escape_string(directoryPathSTR))
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
if row == None:
print >> sys.stderr, "No uuid for file: \"", directoryPathSTR, "\""
sharedVariablesAcrossModules.globalErrorCount += 1
sqlLock.release()
continue
while row != None:
#add to files in this directory tuple list
derivedFromOriginalName = row[0]
originalLocation = row[1]
if derivedFromOriginalName != None:
originalLocation = derivedFromOriginalName
originalName = os.path.basename(
originalLocation
) + u"/" #+ u"/" keeps normalized after original / is very uncommon in a file name
directoryContentsTuples.append((
originalName,
item,
))
row = c.fetchone()
sqlLock.release()
#order files by their original name
for originalName, item in sorted(
directoryContentsTuples,
key=lambda listItems: listItems[0],
cmp=sharedVariablesAcrossModules.collator.compare):
#item = unicode(item)
itemdirectoryPath = os.path.join(directoryPath, item)
#myuuid = uuid.uuid4()
myuuid = ""
DMDIDS = ""
#directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath + "objects", "objects", 1)
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath,
baseDirectoryPathString,
1)
sql = """SELECT fileUUID, fileGrpUse, fileGrpUUID, Files.transferUUID, label, originalLocation, Transfers.type
FROM Files
LEFT OUTER JOIN Transfers ON Files.transferUUID = Transfers.transferUUID
WHERE removedTime = 0 AND %s = '%s' AND Files.currentLocation = '%s';""" % (
fileGroupType, fileGroupIdentifier,
MySQLdb.escape_string(directoryPathSTR))
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
if row == None:
print >> sys.stderr, "No uuid for file: \"", directoryPathSTR, "\""
sharedVariablesAcrossModules.globalErrorCount += 1
sqlLock.release()
continue
while row != None:
myuuid = row[0]
use = row[1]
fileGrpUUID = row[2]
transferUUID = row[3]
label = row[4]
originalLocation = row[5]
typeOfTransfer = row[6]
row = c.fetchone()
sqlLock.release()
filename = ''.join(quoteattr(item).split("\"")[1:-1])
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath, "", 1)
#print filename, directoryPathSTR
if typeOfTransfer == "TRIM" and trimStructMap == None:
trimStructMap = etree.Element("structMap",
attrib={
"TYPE": "logical",
"ID": "structMap_2",
"LABEL":
"Hierarchical arrangement"
})
trimStructMapObjects = etree.SubElement(trimStructMap,
"div",
attrib={
"TYPE": "File",
"LABEL": "objects"
})
trimDmdSec = getTrimDmdSec(baseDirectoryPath, fileGroupIdentifier)
globalDmdSecCounter += 1
dmdSecs.append(trimDmdSec)
ID = "dmdSec_" + globalDmdSecCounter.__str__()
trimDmdSec.set("ID", ID)
trimStructMapObjects.set("DMDID", ID)
# ==
trimAmdSec = etree.Element("amdSec")
globalAmdSecCounter += 1
amdSecs.append(trimAmdSec)
ID = "amdSec_" + globalAmdSecCounter.__str__()
trimAmdSec.set("ID", ID)
digiprovMD = getTrimAmdSec(baseDirectoryPath, fileGroupIdentifier)
globalDigiprovMDCounter += 1
digiprovMD.set("ID",
"digiprovMD_" + globalDigiprovMDCounter.__str__())
trimAmdSec.append(digiprovMD)
trimStructMapObjects.set("ADMID", ID)
FILEID = "%s-%s" % (item, myuuid)
if FILEID[0].isdigit():
FILEID = "_" + FILEID
#<fptr FILEID="file1-UUID"/>
fileDiv = etree.SubElement(structMapDiv, "div")
if label != None:
fileDiv.set("LABEL", label)
fileDiv.set("TYPE", "Item")
newChild(fileDiv, "fptr", sets=[("FILEID", FILEID)])
fileNameToFileID[item] = FILEID
GROUPID = ""
if fileGrpUUID:
GROUPID = "Group-%s" % (fileGrpUUID)
if use == "TRIM file metadata":
use = "metadata"
elif use == "original" or use == "submissionDocumentation" or use == "metadata" or use == "maildirFile":
GROUPID = "Group-%s" % (myuuid)
if use == "maildirFile":
use = "original"
if use == "original":
DMDIDS = createDMDIDSFromCSVParsedMetadataFiles(
originalLocation.replace('%transferDirectory%', "", 1))
if DMDIDS:
fileDiv.set("DMDID", DMDIDS)
if typeOfTransfer == "TRIM":
trimFileDiv = etree.SubElement(trimStructMapObjects,
"div",
attrib={"TYPE": "Item"})
trimFileDmdSec = getTrimFileDmdSec(baseDirectoryPath,
fileGroupIdentifier,
myuuid)
globalDmdSecCounter += 1
dmdSecs.append(trimFileDmdSec)
ID = "dmdSec_" + globalDmdSecCounter.__str__()
trimFileDmdSec.set("ID", ID)
trimFileDiv.set("DMDID", ID)
etree.SubElement(trimFileDiv,
"fptr",
attrib={"FILEID": FILEID})
elif use == "preservation":
sql = "SELECT * FROM Derivations WHERE derivedFileUUID = '" + myuuid + "';"
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
while row != None:
GROUPID = "Group-%s" % (row[1])
row = c.fetchone()
sqlLock.release()
elif use == "license" or use == "text/ocr" or use == "DSPACEMETS":
sql = """SELECT fileUUID FROM Files WHERE removedTime = 0 AND %s = '%s' AND fileGrpUse = 'original' AND originalLocation LIKE '%s/%%'""" % (
fileGroupType, fileGroupIdentifier,
MySQLdb.escape_string(
os.path.dirname(originalLocation)).replace("%", "\%"))
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
while row != None:
GROUPID = "Group-%s" % (row[0])
row = c.fetchone()
sqlLock.release()
elif use == "service":
fileFileIDPath = itemdirectoryPath.replace(
baseDirectoryPath + "objects/service/",
baseDirectoryPathString + "objects/")
objectNameExtensionIndex = fileFileIDPath.rfind(".")
fileFileIDPath = fileFileIDPath[:objectNameExtensionIndex + 1]
sql = """SELECT fileUUID FROM Files WHERE removedTime = 0 AND %s = '%s' AND fileGrpUse = 'original' AND currentLocation LIKE '%s%%'""" % (
fileGroupType, fileGroupIdentifier,
MySQLdb.escape_string(fileFileIDPath.replace("%", "\%")))
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
while row != None:
GROUPID = "Group-%s" % (row[0])
row = c.fetchone()
sqlLock.release()
elif use == "TRIM container metadata":
GROUPID = "Group-%s" % (myuuid)
use = "metadata"
if transferUUID:
sql = "SELECT type FROM Transfers WHERE transferUUID = '%s';" % (
transferUUID)
rows = databaseInterface.queryAllSQL(sql)
if rows[0][0] == "Dspace":
if use == "DSPACEMETS":
use = "submissionDocumentation"
admidApplyTo = None
if GROUPID == "": #is an AIP identifier
GROUPID = myuuid
admidApplyTo = structMapDiv.getparent()
LABEL = "mets.xml-%s" % (GROUPID)
dmdSec, ID = createMDRefDMDSec(LABEL, itemdirectoryPath,
directoryPathSTR)
dmdSecs.append(dmdSec)
if admidApplyTo != None:
admidApplyTo.set("DMDID", ID)
else:
dspaceMetsDMDID = ID
if GROUPID == "":
sharedVariablesAcrossModules.globalErrorCount += 1
print >> sys.stderr, "No groupID for file: \"", directoryPathSTR, "\""
if use not in globalFileGrps:
print >> sys.stderr, "Invalid use: \"%s\"" % (use)
sharedVariablesAcrossModules.globalErrorCount += 1
else:
file = newChild(globalFileGrps[use],
"file",
sets=[("ID", FILEID), ("GROUPID", GROUPID)])
if use == "original":
filesInThisDirectory.append(file)
#<Flocat xlink:href="objects/file1-UUID" locType="other" otherLocType="system"/>
Flocat = newChild(file,
"FLocat",
sets=[(xlinkBNS + "href", directoryPathSTR),
("LOCTYPE", "OTHER"),
("OTHERLOCTYPE", "SYSTEM")])
if includeAmdSec:
AMD, ADMID = getAMDSec(myuuid, directoryPathSTR, use,
fileGroupType, fileGroupIdentifier,
transferUUID, itemdirectoryPath,
typeOfTransfer)
amdSecs.append(AMD)
file.set("ADMID", ADMID)
if dspaceMetsDMDID != None:
for file in filesInThisDirectory:
file.set("DMDID", dspaceMetsDMDID)
for item in sorted(delayed,
cmp=sharedVariablesAcrossModules.collator.compare):
itemdirectoryPath = os.path.join(directoryPath, item)
directoryDiv = newChild(structMapDiv,
"div",
sets=[("TYPE", "Directory"), ("LABEL", item)])
DMDIDS = createDMDIDSFromCSVParsedMetadataDirectories(
itemdirectoryPath.replace(baseDirectoryPath, "", 1))
if DMDIDS:
directoryDiv.set("DMDID", DMDIDS)
createFileSec(itemdirectoryPath, directoryDiv)
def createFileSec(directoryPath, structMapDiv):
global fileNameToFileID
global trimStructMap
global trimStructMapObjects
global globalDmdSecCounter
global globalAmdSecCounter
global globalDigiprovMDCounter
global dmdSecs
global amdSecs
delayed = []
filesInThisDirectory = []
dspaceMetsDMDID = None
directoryContents = os.listdir(directoryPath)
directoryContentsTuples = []
for item in directoryContents:
itemdirectoryPath = os.path.join(directoryPath, item)
if os.path.isdir(itemdirectoryPath):
delayed.append(item)
elif os.path.isfile(itemdirectoryPath):
#find original file name
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath, baseDirectoryPathString, 1)
sql = """SELECT Related.originalLocation AS 'derivedFromOriginalLocation',
Current.originalLocation
FROM Files AS Current
LEFT OUTER JOIN Derivations ON Current.fileUUID = Derivations.derivedFileUUID
LEFT OUTER JOIN Files AS Related ON Derivations.sourceFileUUID = Related.fileUUID
WHERE Current.removedTime = 0 AND Current.%s = '%s'
AND Current.currentLocation = '%s';""" % (fileGroupType, fileGroupIdentifier, MySQLdb.escape_string(directoryPathSTR))
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
if row == None:
print >>sys.stderr, "No uuid for file: \"", directoryPathSTR, "\""
sharedVariablesAcrossModules.globalErrorCount += 1
sqlLock.release()
continue
while row != None:
#add to files in this directory tuple list
derivedFromOriginalName = row[0]
originalLocation = row[1]
if derivedFromOriginalName != None:
originalLocation = derivedFromOriginalName
originalName = os.path.basename(originalLocation) + u"/" #+ u"/" keeps normalized after original / is very uncommon in a file name
directoryContentsTuples.append((originalName, item,))
row = c.fetchone()
sqlLock.release()
#order files by their original name
for originalName, item in sorted(directoryContentsTuples, key=lambda listItems: listItems[0], cmp=sharedVariablesAcrossModules.collator.compare):
#item = unicode(item)
itemdirectoryPath = os.path.join(directoryPath, item)
#myuuid = uuid.uuid4()
myuuid=""
DMDIDS=""
#directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath + "objects", "objects", 1)
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath, baseDirectoryPathString, 1)
sql = """SELECT fileUUID, fileGrpUse, fileGrpUUID, Files.transferUUID, label, originalLocation, Transfers.type
FROM Files
LEFT OUTER JOIN Transfers ON Files.transferUUID = Transfers.transferUUID
WHERE removedTime = 0 AND %s = '%s' AND Files.currentLocation = '%s';""" % (fileGroupType, fileGroupIdentifier, MySQLdb.escape_string(directoryPathSTR))
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
if row == None:
print >>sys.stderr, "No uuid for file: \"", directoryPathSTR, "\""
sharedVariablesAcrossModules.globalErrorCount += 1
sqlLock.release()
continue
while row != None:
myuuid = row[0]
use = row[1]
fileGrpUUID = row[2]
transferUUID = row[3]
label = row[4]
originalLocation = row[5]
typeOfTransfer = row[6]
row = c.fetchone()
sqlLock.release()
filename = ''.join(quoteattr(item).split("\"")[1:-1])
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath, "", 1)
#print filename, directoryPathSTR
if typeOfTransfer == "TRIM" and trimStructMap == None:
trimStructMap = etree.Element("structMap", attrib={"TYPE":"logical", "ID":"structMap_2", "LABEL":"Hierarchical arrangement"})
trimStructMapObjects = etree.SubElement(trimStructMap, "div", attrib={"TYPE":"File", "LABEL":"objects"})
trimDmdSec = getTrimDmdSec(baseDirectoryPath, fileGroupIdentifier)
globalDmdSecCounter += 1
dmdSecs.append(trimDmdSec)
ID = "dmdSec_" + globalDmdSecCounter.__str__()
trimDmdSec.set("ID", ID)
trimStructMapObjects.set("DMDID", ID)
# ==
trimAmdSec = etree.Element("amdSec")
globalAmdSecCounter += 1
amdSecs.append(trimAmdSec)
ID = "amdSec_" + globalAmdSecCounter.__str__()
trimAmdSec.set("ID", ID)
digiprovMD = getTrimAmdSec(baseDirectoryPath, fileGroupIdentifier)
globalDigiprovMDCounter += 1
digiprovMD.set("ID", "digiprovMD_"+ globalDigiprovMDCounter.__str__())
trimAmdSec.append(digiprovMD)
trimStructMapObjects.set("ADMID", ID)
FILEID="%s-%s" % (item, myuuid)
if FILEID[0].isdigit():
FILEID = "_" + FILEID
#<fptr FILEID="file1-UUID"/>
fileDiv = etree.SubElement(structMapDiv, "div")
if label != None:
fileDiv.set("LABEL", label)
fileDiv.set("TYPE", "Item")
newChild(fileDiv, "fptr", sets=[("FILEID",FILEID)])
fileNameToFileID[item] = FILEID
GROUPID = ""
if fileGrpUUID:
GROUPID = "Group-%s" % (fileGrpUUID)
if use == "TRIM file metadata":
use = "metadata"
elif use == "original" or use == "submissionDocumentation" or use == "metadata" or use == "maildirFile":
GROUPID = "Group-%s" % (myuuid)
if use == "maildirFile":
use = "original"
if use == "original":
DMDIDS = createDMDIDSFromCSVParsedMetadataFiles(originalLocation.replace('%transferDirectory%', "", 1))
if DMDIDS:
fileDiv.set("DMDID", DMDIDS)
if typeOfTransfer == "TRIM":
trimFileDiv = etree.SubElement(trimStructMapObjects, "div", attrib={"TYPE":"Item"})
trimFileDmdSec = getTrimFileDmdSec(baseDirectoryPath, fileGroupIdentifier, myuuid)
globalDmdSecCounter += 1
dmdSecs.append(trimFileDmdSec)
ID = "dmdSec_" + globalDmdSecCounter.__str__()
trimFileDmdSec.set("ID", ID)
trimFileDiv.set("DMDID", ID)
etree.SubElement(trimFileDiv, "fptr", attrib={"FILEID":FILEID})
elif use == "preservation":
sql = "SELECT * FROM Derivations WHERE derivedFileUUID = '" + myuuid + "';"
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
while row != None:
GROUPID = "Group-%s" % (row[1])
row = c.fetchone()
sqlLock.release()
elif use == "license" or use == "text/ocr" or use == "DSPACEMETS":
sql = """SELECT fileUUID FROM Files WHERE removedTime = 0 AND %s = '%s' AND fileGrpUse = 'original' AND originalLocation LIKE '%s/%%'""" % (fileGroupType, fileGroupIdentifier, MySQLdb.escape_string(os.path.dirname(originalLocation)).replace("%", "\%"))
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
while row != None:
GROUPID = "Group-%s" % (row[0])
row = c.fetchone()
sqlLock.release()
elif use == "service":
fileFileIDPath = itemdirectoryPath.replace(baseDirectoryPath + "objects/service/", baseDirectoryPathString + "objects/")
objectNameExtensionIndex = fileFileIDPath.rfind(".")
fileFileIDPath = fileFileIDPath[:objectNameExtensionIndex + 1]
sql = """SELECT fileUUID FROM Files WHERE removedTime = 0 AND %s = '%s' AND fileGrpUse = 'original' AND currentLocation LIKE '%s%%'""" % (fileGroupType, fileGroupIdentifier, MySQLdb.escape_string(fileFileIDPath.replace("%", "\%")))
c, sqlLock = databaseInterface.querySQL(sql)
row = c.fetchone()
while row != None:
GROUPID = "Group-%s" % (row[0])
row = c.fetchone()
sqlLock.release()
elif use == "TRIM container metadata":
GROUPID = "Group-%s" % (myuuid)
use = "metadata"
if transferUUID:
sql = "SELECT type FROM Transfers WHERE transferUUID = '%s';" % (transferUUID)
rows = databaseInterface.queryAllSQL(sql)
if rows[0][0] == "Dspace":
if use == "DSPACEMETS":
use = "submissionDocumentation"
admidApplyTo = None
if GROUPID=="": #is an AIP identifier
GROUPID = myuuid
admidApplyTo = structMapDiv.getparent()
LABEL = "mets.xml-%s" % (GROUPID)
dmdSec, ID = createMDRefDMDSec(LABEL, itemdirectoryPath, directoryPathSTR)
dmdSecs.append(dmdSec)
if admidApplyTo != None:
admidApplyTo.set("DMDID", ID)
else:
dspaceMetsDMDID = ID
if GROUPID=="":
sharedVariablesAcrossModules.globalErrorCount += 1
print >>sys.stderr, "No groupID for file: \"", directoryPathSTR, "\""
if use not in globalFileGrps:
print >>sys.stderr, "Invalid use: \"%s\"" % (use)
sharedVariablesAcrossModules.globalErrorCount += 1
else:
file = newChild(globalFileGrps[use], "file", sets=[("ID",FILEID), ("GROUPID",GROUPID)])
if use == "original":
filesInThisDirectory.append(file)
#<Flocat xlink:href="objects/file1-UUID" locType="other" otherLocType="system"/>
Flocat = newChild(file, "FLocat", sets=[(xlinkBNS +"href",directoryPathSTR), ("LOCTYPE","OTHER"), ("OTHERLOCTYPE", "SYSTEM")])
if includeAmdSec:
AMD, ADMID = getAMDSec(myuuid, directoryPathSTR, use, fileGroupType, fileGroupIdentifier, transferUUID, itemdirectoryPath, typeOfTransfer)
amdSecs.append(AMD)
file.set("ADMID", ADMID)
if dspaceMetsDMDID != None:
for file in filesInThisDirectory:
file.set("DMDID", dspaceMetsDMDID)
for item in sorted(delayed, cmp=sharedVariablesAcrossModules.collator.compare):
itemdirectoryPath = os.path.join(directoryPath, item)
directoryDiv = newChild(structMapDiv, "div", sets=[("TYPE","Directory"), ("LABEL",item)])
DMDIDS = createDMDIDSFromCSVParsedMetadataDirectories(itemdirectoryPath.replace(baseDirectoryPath, "", 1))
if DMDIDS:
directoryDiv.set("DMDID", DMDIDS)
createFileSec(itemdirectoryPath, directoryDiv)
def createFileSec(directoryPath, parentDiv, baseDirectoryPath, baseDirectoryName, fileGroupIdentifier, fileGroupType, includeAmdSec=True):
global fileNameToFileID
global trimStructMap
global trimStructMapObjects
global globalDmdSecCounter
global globalAmdSecCounter
global globalDigiprovMDCounter
global dmdSecs
global amdSecs
filesInThisDirectory = []
dspaceMetsDMDID = None
try:
directoryContents = sorted(os.listdir(directoryPath))
except os.error:
# Directory doesn't exist
print >> sys.stderr, directoryPath, "doesn't exist"
return
structMapDiv = etree.SubElement(parentDiv, ns.metsBNS + 'div', TYPE='Directory', LABEL=os.path.basename(directoryPath))
DMDIDS = createDMDIDsFromCSVMetadata(directoryPath.replace(baseDirectoryPath, "", 1))
if DMDIDS:
structMapDiv.set("DMDID", DMDIDS)
for item in directoryContents:
itemdirectoryPath = os.path.join(directoryPath, item)
if os.path.isdir(itemdirectoryPath):
createFileSec(itemdirectoryPath, structMapDiv, baseDirectoryPath, baseDirectoryName, fileGroupIdentifier, fileGroupType, includeAmdSec)
elif os.path.isfile(itemdirectoryPath):
myuuid=""
DMDIDS=""
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath, baseDirectoryName, 1)
kwargs = {
"removedtime__isnull": True,
fileGroupType: fileGroupIdentifier,
"currentlocation": directoryPathSTR
}
try:
f = File.objects.get(**kwargs)
except File.DoesNotExist:
print >>sys.stderr, "No uuid for file: \"", directoryPathSTR, "\""
sharedVariablesAcrossModules.globalErrorCount += 1
continue
myuuid = f.uuid
use = f.filegrpuse
fileGrpUUID = f.filegrpuuid
transferUUID = f.transfer_id
label = f.label
originalLocation = f.originallocation
typeOfTransfer = f.transfer.type if f.transfer else None
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath, "", 1)
if typeOfTransfer == "TRIM" and trimStructMap is None:
trimStructMap = etree.Element(ns.metsBNS + "structMap", attrib={"TYPE":"logical", "ID":"structMap_2", "LABEL":"Hierarchical arrangement"})
trimStructMapObjects = etree.SubElement(trimStructMap, ns.metsBNS + "div", attrib={"TYPE":"File", "LABEL":"objects"})
trimDmdSec = getTrimDmdSec(baseDirectoryPath, fileGroupIdentifier)
globalDmdSecCounter += 1
dmdSecs.append(trimDmdSec)
ID = "dmdSec_" + globalDmdSecCounter.__str__()
trimDmdSec.set("ID", ID)
trimStructMapObjects.set("DMDID", ID)
trimAmdSec = etree.Element(ns.metsBNS + "amdSec")
globalAmdSecCounter += 1
amdSecs.append(trimAmdSec)
ID = "amdSec_" + globalAmdSecCounter.__str__()
trimAmdSec.set("ID", ID)
digiprovMD = getTrimAmdSec(baseDirectoryPath, fileGroupIdentifier)
globalDigiprovMDCounter += 1
digiprovMD.set("ID", "digiprovMD_"+ globalDigiprovMDCounter.__str__())
trimAmdSec.append(digiprovMD)
trimStructMapObjects.set("ADMID", ID)
fileId="file-%s" % (myuuid, )
#<fptr FILEID="file-<UUID>" LABEL="filename.ext">
label = item if not label else label
fileDiv = etree.SubElement(structMapDiv, ns.metsBNS + "div", LABEL=label, TYPE='Item')
etree.SubElement(fileDiv, ns.metsBNS + 'fptr', FILEID=fileId)
fileNameToFileID[item] = fileId
GROUPID = ""
if fileGrpUUID:
GROUPID = "Group-%s" % (fileGrpUUID)
if use == "TRIM file metadata":
use = "metadata"
elif use in ("original", "submissionDocumentation", "metadata", "maildirFile"):
GROUPID = "Group-%s" % (myuuid)
if use == "maildirFile":
use = "original"
if use == "original":
DMDIDS = createDMDIDsFromCSVMetadata(originalLocation.replace('%transferDirectory%', "", 1))
if DMDIDS:
fileDiv.set("DMDID", DMDIDS)
if typeOfTransfer == "TRIM":
trimFileDiv = etree.SubElement(trimStructMapObjects, ns.metsBNS + "div", attrib={"TYPE":"Item"})
trimFileDmdSec = getTrimFileDmdSec(baseDirectoryPath, fileGroupIdentifier, myuuid)
globalDmdSecCounter += 1
dmdSecs.append(trimFileDmdSec)
ID = "dmdSec_" + globalDmdSecCounter.__str__()
trimFileDmdSec.set("ID", ID)
trimFileDiv.set("DMDID", ID)
etree.SubElement(trimFileDiv, ns.metsBNS + "fptr", FILEID=fileId)
# Dspace transfers are treated specially, but some of these fileGrpUses
# may be encountered in other types
elif typeOfTransfer == "Dspace" and (use in ("license", "text/ocr", "DSPACEMETS")):
kwargs = {
"removedtime__isnull": True,
fileGroupType: fileGroupIdentifier,
"filegrpuse": "original",
"originallocation__startswith": os.path.dirname(originalLocation)
}
try:
f = File.objects.get(**kwargs)
GROUPID = 'Group-' + f.uuid
except (File.DoesNotExist, File.MultipleObjectsReturned):
pass
elif use == "preservation" or use == "text/ocr":
d = Derivation.objects.get(derived_file_id=myuuid)
GROUPID = "Group-" + d.source_file_id
elif use == "service":
fileFileIDPath = itemdirectoryPath.replace(baseDirectoryPath + "objects/service/", baseDirectoryName + "objects/")
objectNameExtensionIndex = fileFileIDPath.rfind(".")
fileFileIDPath = fileFileIDPath[:objectNameExtensionIndex + 1]
kwargs = {
"removedtime__isnull": True,
fileGroupType: fileGroupIdentifier,
"filegrpuse": "original",
"currentlocation__startswith": fileFileIDPath
}
f = File.objects.get(**kwargs)
GROUPID = "Group-" + f.uuid
elif use == "TRIM container metadata":
GROUPID = "Group-%s" % (myuuid)
use = "metadata"
if transferUUID:
t = Transfer.objects.get(uuid=transferUUID)
if t.type == "Dspace":
if use == "DSPACEMETS":
use = "submissionDocumentation"
admidApplyTo = None
if GROUPID=="": #is an AIP identifier
GROUPID = myuuid
admidApplyTo = structMapDiv.getparent()
label = "mets.xml-%s" % (GROUPID)
dspace_dmdsecs = createDSpaceDMDSec(label, itemdirectoryPath, directoryPathSTR)
if dspace_dmdsecs:
dmdSecs.extend(dspace_dmdsecs.values())
ids = ' '.join(dspace_dmdsecs.keys())
if admidApplyTo is not None:
admidApplyTo.set("DMDID", ids)
else:
dspaceMetsDMDID = ids
if GROUPID=="":
sharedVariablesAcrossModules.globalErrorCount += 1
print >>sys.stderr, "No groupID for file: \"", directoryPathSTR, "\""
if use not in globalFileGrps:
print >>sys.stderr, "Invalid use: \"%s\"" % (use)
sharedVariablesAcrossModules.globalErrorCount += 1
else:
file_elem = etree.SubElement(globalFileGrps[use], ns.metsBNS + "file", ID=fileId, GROUPID=GROUPID)
if use == "original":
filesInThisDirectory.append(file_elem)
#<Flocat xlink:href="objects/file1-UUID" locType="other" otherLocType="system"/>
newChild(file_elem, ns.metsBNS + "FLocat", sets=[(ns.xlinkBNS +"href",directoryPathSTR), ("LOCTYPE","OTHER"), ("OTHERLOCTYPE", "SYSTEM")])
if includeAmdSec:
AMD, ADMID = getAMDSec(myuuid, directoryPathSTR, use, fileGroupType, fileGroupIdentifier, transferUUID, itemdirectoryPath, typeOfTransfer, baseDirectoryPath)
amdSecs.append(AMD)
file_elem.set("ADMID", ADMID)
if dspaceMetsDMDID != None:
for file_elem in filesInThisDirectory:
file_elem.set("DMDID", dspaceMetsDMDID)
return structMapDiv
def createFileSec(directoryPath, parentDiv, baseDirectoryPath, baseDirectoryName, fileGroupIdentifier, fileGroupType, includeAmdSec=True):
"""
Creates fileSec and structMap entries for files on disk recursively.
:param directoryPath: Path to recursively traverse and create METS entries for
:param parentDiv: structMap div to attach created children to
:param baseDirectoryPath: SIP path
:param baseDirectoryName: Name of the %var% for the SIP path
:param fileGroupIdentifier: SIP UUID
:param fileGroupType: Name of the foreign key field linking to SIP UUID in files.
:param includeAmdSec: If True, creates amdSecs for the files
"""
global fileNameToFileID
global trimStructMap
global trimStructMapObjects
global globalDmdSecCounter
global globalAmdSecCounter
global globalDigiprovMDCounter
global dmdSecs
global amdSecs
filesInThisDirectory = []
dspaceMetsDMDID = None
try:
directoryContents = sorted(os.listdir(directoryPath))
except os.error:
# Directory doesn't exist
print(directoryPath, "doesn't exist", file=sys.stderr)
return
structMapDiv = etree.SubElement(parentDiv, ns.metsBNS + 'div', TYPE='Directory', LABEL=os.path.basename(directoryPath))
DMDIDS = createDMDIDsFromCSVMetadata(directoryPath.replace(baseDirectoryPath, "", 1))
if DMDIDS:
structMapDiv.set("DMDID", DMDIDS)
for item in directoryContents:
itemdirectoryPath = os.path.join(directoryPath, item)
if os.path.isdir(itemdirectoryPath):
createFileSec(itemdirectoryPath, structMapDiv, baseDirectoryPath, baseDirectoryName, fileGroupIdentifier, fileGroupType, includeAmdSec)
elif os.path.isfile(itemdirectoryPath):
# Setup variables for creating file metadata
DMDIDS = ""
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath, baseDirectoryName, 1)
kwargs = {
"removedtime__isnull": True,
fileGroupType: fileGroupIdentifier,
"currentlocation": directoryPathSTR
}
try:
f = File.objects.get(**kwargs)
except File.DoesNotExist:
print("No uuid for file: \"", directoryPathSTR, "\"", file=sys.stderr)
sharedVariablesAcrossModules.globalErrorCount += 1
continue
use = f.filegrpuse
label = f.label
typeOfTransfer = f.transfer.type if f.transfer else None
directoryPathSTR = itemdirectoryPath.replace(baseDirectoryPath, "", 1)
# Special TRIM processing
if typeOfTransfer == "TRIM" and trimStructMap is None:
trimStructMap = etree.Element(ns.metsBNS + "structMap", attrib={"TYPE": "logical", "ID": "structMap_2", "LABEL": "Hierarchical arrangement"})
trimStructMapObjects = etree.SubElement(trimStructMap, ns.metsBNS + "div", attrib={"TYPE": "File", "LABEL": "objects"})
trimDmdSec = getTrimDmdSec(baseDirectoryPath, fileGroupIdentifier)
globalDmdSecCounter += 1
dmdSecs.append(trimDmdSec)
ID = "dmdSec_" + globalDmdSecCounter.__str__()
trimDmdSec.set("ID", ID)
trimStructMapObjects.set("DMDID", ID)
trimAmdSec = etree.Element(ns.metsBNS + "amdSec")
globalAmdSecCounter += 1
amdSecs.append(trimAmdSec)
ID = "amdSec_" + globalAmdSecCounter.__str__()
trimAmdSec.set("ID", ID)
digiprovMD = getTrimAmdSec(baseDirectoryPath, fileGroupIdentifier)
globalDigiprovMDCounter += 1
digiprovMD.set("ID", "digiprovMD_" + str(globalDigiprovMDCounter))
trimAmdSec.append(digiprovMD)
trimStructMapObjects.set("ADMID", ID)
# Create <div TYPE="Item"> and child <fptr>
# <fptr FILEID="file-<UUID>" LABEL="filename.ext">
fileId = "file-{}".format(f.uuid)
label = item if not label else label
fileDiv = etree.SubElement(structMapDiv, ns.metsBNS + "div", LABEL=label, TYPE='Item')
etree.SubElement(fileDiv, ns.metsBNS + 'fptr', FILEID=fileId)
fileNameToFileID[item] = fileId
# Determine fileGrp @GROUPID based on the file's fileGrpUse and transfer type
GROUPID = ""
if f.filegrpuuid:
# GROUPID was determined elsewhere
GROUPID = "Group-%s" % (f.filegrpuuid)
if use == "TRIM file metadata":
use = "metadata"
elif use in ("original", "submissionDocumentation", "metadata", "maildirFile"):
# These files are in a group defined by themselves
GROUPID = "Group-%s" % (f.uuid)
if use == "maildirFile":
use = "original"
# Check for CSV-based Dublincore dmdSec
if use == "original":
DMDIDS = createDMDIDsFromCSVMetadata(f.originallocation.replace('%transferDirectory%', "", 1))
if DMDIDS:
fileDiv.set("DMDID", DMDIDS)
# More special TRIM processing
if typeOfTransfer == "TRIM":
trimFileDiv = etree.SubElement(trimStructMapObjects, ns.metsBNS + "div", attrib={"TYPE": "Item"})
trimFileDmdSec = getTrimFileDmdSec(baseDirectoryPath, fileGroupIdentifier, f.uuid)
globalDmdSecCounter += 1
dmdSecs.append(trimFileDmdSec)
ID = "dmdSec_" + globalDmdSecCounter.__str__()
trimFileDmdSec.set("ID", ID)
trimFileDiv.set("DMDID", ID)
etree.SubElement(trimFileDiv, ns.metsBNS + "fptr", FILEID=fileId)
elif typeOfTransfer == "Dspace" and (use in ("license", "text/ocr", "DSPACEMETS")):
# Dspace transfers are treated specially, but some of these fileGrpUses may be encountered in other types
kwargs = {
"removedtime__isnull": True,
fileGroupType: fileGroupIdentifier,
"filegrpuse": "original",
"originallocation__startswith": os.path.dirname(f.originallocation)
}
original_file = File.objects.filter(**kwargs).first()
if original_file is not None:
GROUPID = 'Group-' + original_file.uuid
elif use in ("preservation", "text/ocr"):
# Derived files should be in the original file's group
d = Derivation.objects.get(derived_file_id=f.uuid)
GROUPID = "Group-" + d.source_file_id
elif use == "service":
# Service files are in the original file's group
fileFileIDPath = itemdirectoryPath.replace(baseDirectoryPath + "objects/service/", baseDirectoryName + "objects/")
objectNameExtensionIndex = fileFileIDPath.rfind(".")
fileFileIDPath = fileFileIDPath[:objectNameExtensionIndex + 1]
kwargs = {
"removedtime__isnull": True,
fileGroupType: fileGroupIdentifier,
"filegrpuse": "original",
"currentlocation__startswith": fileFileIDPath
}
original_file = File.objects.get(**kwargs)
GROUPID = "Group-" + original_file.uuid
elif use == "TRIM container metadata":
GROUPID = "Group-%s" % (f.uuid)
use = "metadata"
# Special DSPACEMETS processing
if f.transfer and f.transfer.type == "Dspace" and use == "DSPACEMETS":
use = "submissionDocumentation"
admidApplyTo = None
if GROUPID == "": # is an AIP identifier
GROUPID = f.uuid
admidApplyTo = structMapDiv.getparent()
label = "mets.xml-%s" % (GROUPID)
dspace_dmdsecs = createDSpaceDMDSec(label, itemdirectoryPath, directoryPathSTR)
if dspace_dmdsecs:
dmdSecs.extend(dspace_dmdsecs.values())
ids = ' '.join(dspace_dmdsecs.keys())
if admidApplyTo is not None:
admidApplyTo.set("DMDID", ids)
else:
dspaceMetsDMDID = ids
if GROUPID == "":
sharedVariablesAcrossModules.globalErrorCount += 1
print("No groupID for file: \"", directoryPathSTR, "\"", file=sys.stderr)
if use not in globalFileGrps:
print('Invalid use: "%s"' % (use), file=sys.stderr)
sharedVariablesAcrossModules.globalErrorCount += 1
else:
file_elem = etree.SubElement(globalFileGrps[use], ns.metsBNS + "file", ID=fileId, GROUPID=GROUPID)
if use == "original":
filesInThisDirectory.append(file_elem)
#<Flocat xlink:href="objects/file1-UUID" locType="other" otherLocType="system"/>
newChild(file_elem, ns.metsBNS + "FLocat", sets=[(ns.xlinkBNS + "href", directoryPathSTR), ("LOCTYPE", "OTHER"), ("OTHERLOCTYPE", "SYSTEM")])
if includeAmdSec:
AMD, ADMID = getAMDSec(f.uuid, directoryPathSTR, use, fileGroupType, fileGroupIdentifier, f.transfer_id, itemdirectoryPath, typeOfTransfer, baseDirectoryPath)
amdSecs.append(AMD)
file_elem.set("ADMID", ADMID)
if dspaceMetsDMDID is not None:
for file_elem in filesInThisDirectory:
file_elem.set("DMDID", dspaceMetsDMDID)
return structMapDiv