def test4():
'''ASTRODATA-close TEST 4: SEF, Closing AD subdata will not affect hdulist
'''
ad = AstroData(sci1)
ad['SCI', 1].close()
assert_not_equal(ad.hdulist, None, msg='original hdulist is None')
ad.close()
def test3():
"""ASTRODATA-remove TEST 3: Fail when given index out of range"""
ad1 = AstroData(sci123)
print "\n >>>>>>> AD <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD remove <<<<<<<<"
ad1.remove(3)
print("ad1.remove(3)")
def test13():
"""ASTRODATA-insert TEST 13: Fail when matching XNAM XVER found"""
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
ad1.info()
adsci = ad4['SCI', 1]
# Inserting sci 1 when sci 1 already exists
ad1.insert(index=0, header=adsci.header, data=adsci.data)
def test13():
"""ASTRODATA-append TEST 13: Fail sci1 to sci123 """
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
print "\n >>>>>>> AD HOST <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD APPEND <<<<<<<<"
adsci = ad4['SCI', 1]
print("adsci = ad4['SCI', 1]")
ad1.append(header=adsci.header, data=adsci.data)
def test1():
'''ASTRODATA-single-extfuncs TEST 1: get_data()
'''
print('\n\t* single ext fits testfile: %s' % sci1)
ad = AstroData(sci1)
print('\tad = AstroData(sci1)')
data = ad.get_data()
print('\tdata = ad.get_data()')
print('\tid(data) = %s' % str(id(data)))
print('\tid(ad.data) = %s' % str(id(ad.data)))
eq_(id(data), id(ad.data), msg='objects are different')
def test3():
'''ASTRODATA-single-extfuncs TEST 3: get_header() (extension)
'''
print('\n\t* single ext fits testfile: %s' % sci1)
ad = AstroData(sci1)
print('\tad = AstroData(sci1)')
header = ad.get_header()
print('\theader = ad.get_header)')
print('\tid(header) = %s' % str(id(header)))
print('\tid(ad[0].header) = %s' % str(id(ad[0].header)))
eq_(id(header), id(ad[0].header), msg='objects are different')
def test2():
'''ASTRODATA-single-extfuncs TEST 2: set_data()
'''
print('\n\t* single ext fits testfile: %s' % sci1)
ad = AstroData(sci1)
print('\tad = AstroData(sci1)')
a = array([1,2,3])
print('\ta = array([1,2,3])')
ad.set_data(a)
print('\tad.set_data(a)')
for i in range(len(ad)):
eq_(ad.data[i], a[i], msg='array elements are different')
def test2():
"""
ASTRODATA-deepcopy TEST 2: Orig attribute change does not affect copy (MEF)
"""
ad = AstroData(sci123)
adDeepcopy = deepcopy(ad)
savedFilename = ad._AstroData__origFilename
ad._AstroData__origFilename = "newfilename.fits"
eq_(adDeepcopy._AstroData__origFilename, savedFilename,
msg="The attribute _AstroData__origFilename has been altered in deepcopy")
ad.close()
adDeepcopy.close()
def test1():
'''ASTRODATA-iter TEST 1: Compare for AD and for HDUList (MEF)'''
ad = AstroData(sci123)
aditerImageObjectIdList = []
hduImageObjectIdList = []
for a in ad:
aditerImageObjectIdList.append(id(a.hdulist[1]))
for phu in ad.hdulist[1:]:
hduImageObjectIdList.append(id(phu))
ok_(aditerImageObjectIdList == hduImageObjectIdList, \
msg='Object ids are not the same')
ad.close()
def test4():
"""
ASTRODATA-deepcopy TEST 4: Orig attribute change does not affect copy (SEF)
"""
ad = AstroData(sci1)
adDeepcopy = deepcopy(ad)
savedFilename = ad._AstroData__origFilename
ad.mode = "update"
ad._AstroData__origFilename = "newfilename.fits"
eq_(adDeepcopy.mode, "readonly", msg="Deepcopy Failure, mode is not readonly")
ad.close()
adDeepcopy.close()
def test1():
"""ASTRODATA-deepcopy TEST 1: Pyfits HDUList id's are not equal (MEF)"""
ad = AstroData(sci123)
adDeepcopy = deepcopy(ad)
adIdlist = []
adDeepcopyIdlist = []
for ext in ad:
adIdlist.append(id(ext.hdulist[1]))
for dext in adDeepcopy:
adDeepcopyIdlist.append(id(dext.hdulist[1]))
assert_not_equal(adIdlist, adDeepcopyIdlist, msg="hdulist ids are equal")
ad.close()
adDeepcopy.close()
def test7():
'''ASTRODATA-single-extfuncs TEST 7: MEF exceptions
'''
print('\n\t* MEF testfile: %s' % sci123)
hdulist = pyfits.open(sci123)
print('\thdulist = pyfits.open(sci123)')
ad = AstroData(hdulist)
print('\tad = AstroData(hdulist) # 3 ext MEF hdulist')
mes1 = 'This member or method can only be called for '
mes1 += 'Single HDU AstroData instances'
try:
data = ad.get_data()
except Errors.SingleHDUMemberExcept,s:
pass
def test3():
"""ASTRODATA-inferred TEST 3: 'SCI' 1 if no XNAM found (SEF)"""
testhdulist = pyfits.open(sci1)
hlist = []
alist = []
for hdu in testhdulist[1:]:
hlist.append(hdu.name)
print("\n\n HDUList EXTNAME: %s" % hlist)
ad = AstroData(testhdulist)
alist.append((ad[0].extname(), ad[0].extver()))
eq_(ad[0].extname(), "SCI", msg="extname is not sci")
eq_(ad[0].extver(), 1, msg="extver is incorrect")
print("\n AD (EXTNAME,EXTVER): %s" % alist)
ad.close()
testhdulist.close()
def test15():
"""ASTRODATA-insert TEST 15: Build AD from scratch
"""
ad3 = AstroData(mdfscivardq1)
print "\n >>>>>>> AD HOST <<<<<<<<"
ad_new = AstroData()
ad_new.info()
print "\n >>>>>>> AD insert <<<<<<<<"
ad_new.insert(index=0, moredata=ad3)
ad3.info()
print("ad_new.insert(index=0, moredata=ad3, auto_number=True)")
print "\n >>>>>>> AD HOST (NEW) <<<<<<<<"
ad_new.info()
eq_(ad_new[3].extname(), "MDF")
eq_(ad_new[2].extname(), "SCI")
eq_(ad_new[1].extname(), "VAR")
eq_(ad_new[0].extname(), "DQ")
eq_(ad_new[2].extver(), 1)
eq_(ad_new[1].extver(), 1)
eq_(ad_new[0].extver(), 1)
def test1():
"""ASTRODATA-inferred TEST 1: 'SCI',<VER> for all exts if no XNAMs found (MEF)"""
testhdulist = pyfits.open(sci123)
# make it so no XNAM found
for hdu in testhdulist[1:]:
hdu.name = ""
hdu.header.rename_key("extname","xname" )
hlist = []
alist = []
for hdu in testhdulist[1:]:
hlist.append(hdu.name)
print("\n\n HDUList EXTNAME: %s" % hlist)
ad = AstroData(testhdulist)
for i in range(0,3):
alist.append((ad[i].extname(), ad[i].extver()))
eq_(ad[i].extname(), 'SCI', msg="extname is not sci")
eq_(ad[i].extver(), i + 1, msg="extver is incorrect")
print("\n AD (EXTNAME,EXTVER): %s" % alist)
ad.close()
testhdulist.close()
def test5():
'''ASTRODATA-mode TEST 5: Clobber changed readonly file'''
outfile = 'testmode5.fits'
if os.path.exists(outfile):
os.remove(outfile)
shutil.copy(sci123, outfile)
ad = AstroData(outfile, mode='update')
ad.hdulist[0].header['INSTRUME'] = 'GMOS-S'
ad.write(clobber=True)
ad.close()
ad = AstroData(outfile)
ok_(ad.hdulist[0].header['INSTRUME'] == 'GMOS-S', msg='Keyword is different')
os.remove(outfile)
ad.close()
def test2():
"""ASTRODATA-remove TEST 2: Use 'XNAM', XVER"""
ad1 = AstroData(sci123)
print "\n >>>>>>> AD <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD remove <<<<<<<<"
ad1.remove(("SCI",1))
print("ad1.remove(('SCI',1))")
print "\n >>>>>>> AD MODIFIED <<<<<<<<"
ad1.info()
eq_(ad1[0].extname(), "SCI")
eq_(ad1[0].extver(), 2)
eq_(ad1[1].extname(), "SCI")
def test1():
"""ASTRODATA-remove TEST 1: Use index"""
ad1 = AstroData(sci123)
print "\n >>>>>>> AD <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD remove <<<<<<<<"
ad1.remove(1)
print("ad1.remove(1)")
print "\n >>>>>>> AD MODIFIED <<<<<<<<"
ad1.info()
eq_(ad1[0].extname(), "SCI")
eq_(ad1[0].extver(), 2)
eq_(ad1[1].extname(), "SCI")
eq_(ad1[1].extver(), 3)
def test2():
'''ASTRODATA-mode TEST 2: Overwrite readonly AD using name change'''
ad = AstroData(sci123)
outfile = 'testmode2.fits'
if os.path.exists(outfile):
os.remove(outfile)
ad.filename = outfile
ad.write()
assert_true(os.path.isfile(outfile), 'ad.write() FAIL')
os.remove(outfile)
ad.close()
def test8():
"""ASTRODATA-append TEST 8: AUTO NUMBER, var2 to sci123"""
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
print "\n >>>>>>> AD HOST <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD APPEND <<<<<<<<"
adsci = ad4['VAR', 2]
print("adsci = ad4['VAR', 2]")
ad1.append(header=adsci.header, data=adsci.data, auto_number=True)
print "ad1.append(header=adsci.header, data=adsci.data, auto_number=True)"
print "\n >>>>>>> AD HOST (NEW) <<<<<<<<"
ad1.info()
eq_(ad1[3].extname(), "VAR")
eq_(ad1[3].extver(), 4)
def test7():
"""ASTRODATA-append TEST 7: AUTO NUMBER, sci1 to sci123"""
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
print "\n >>>>>>> AD HOST <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD APPEND <<<<<<<<"
adsci = ad4['SCI', 1]
print("adsci = ad4['SCI', 1]")
ad1.append(header=adsci.header, data=adsci.data, auto_number=True)
print "ad1.append(header=adsci.header, data=adsci.data, auto_number=True)"
print "\n >>>>>>> AD HOST (NEW) <<<<<<<<"
ad1.info()
eq_(ad1[3].hdulist[1].name, "SCI")
eq_(ad1[3].extver(), 4)
def test17():
"""ASTRODATA-insert TEST 17: AUTO NUMBER, MDF into MEF
"""
ad3 = AstroData(mdfscivardq1)
ad1 = AstroData(sci123)
print "\n >>>>>>> AD <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD insert <<<<<<<<"
ad1.insert(index=0, header=ad3[0].header, data=ad3[0].data)
mystr = "ad1.insert(index=0, header=ad3[1].header, data=ad3[1].data,"
mystr += " auto_number=True)"
print mystr
print "\n >>>>>>> AD (MODIFIED) <<<<<<<<"
ad1.info()
eq_(ad1[0].extname(), "MDF")
eq_(ad1[0].extver(), None)
def test8():
"""ASTRODATA-insert TEST 8: Increment XVER if XNAME unknown
"""
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
print "\n >>>>>>> AD <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD insert <<<<<<<<"
adsci = ad4['VAR', 2]
print("adsci = ad4['VAR', 2]")
ad1.insert(index=0, header=adsci.header, data=adsci.data, auto_number=True)
print "ad1.insert(index=0,header=adsci.header, data=adsci.data, auto_number=True)"
print "\n >>>>>>> AD MODIFIED <<<<<<<<"
ad1.info()
eq_(ad1[0].extname(), "VAR")
eq_(ad1[0].extver(), 4)
def test9():
"""ASTRODATA-append TEST 9: AUTO NUMBER, var3 to sci12"""
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
print "\n >>>>>>> AD HOST <<<<<<<<"
ad1.hdulist.__delitem__(3)
print("ad1.hdulist.__delitem__(3)")
ad1.info()
print "\n >>>>>>> AD APPEND <<<<<<<<"
adsci = ad4['VAR', 3]
print("adsci = ad4['VAR', 3]")
print "ad1.append(header=adsci.header, data=adsci.data, auto_number=True)"
ad1.append(header=adsci.header, data=adsci.data, auto_number=True)
print "\n >>>>>>> AD HOST (NEW) <<<<<<<<"
ad1.info()
eq_(ad1[2].extname(), "VAR")
eq_(ad1[2].extver(), 3)
def test7():
"""
ASTRODATA-insert TEST 7: AUTO NUMBER, Incremnt XVER & latter indx if XNAME exists
"""
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
print "\n >>>>>>> AD <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD insert <<<<<<<<"
adsci = ad4['SCI', 1]
print("adsci = ad4['SCI', 1]")
ad1.insert(index=1, header=adsci.header, data=adsci.data, auto_number=True)
print "ad1.insert(index=1, header=adsci.header, data=adsci.data, auto_number=True)"
print "\n >>>>>>> MODIFIED AD <<<<<<<<"
ad1.info()
eq_(ad1[1].hdulist[1].name, "SCI")
eq_(ad1[1].extver(), 4)
def test16():
"""ASTRODATA-insert TEST 16: AUTO NUMBER, MDF to empty AD
"""
ad3 = AstroData(mdfscivardq1)
print "\n >>>>>>> AD <<<<<<<<"
ad_new = AstroData(phu=ad3.phu)
ad_new.info()
print "\n >>>>>>> AD insert <<<<<<<<"
ad_new.insert(index=0, header=ad3[0].header, data=ad3[0].data,\
auto_number=True)
mystr = "ad_new.insert(index=0, header=ad4[1].header, data=ad4[1].data,"
mystr += " auto_number=True)"
print mystr
print "\n >>>>>>> AD MODIFIED <<<<<<<<"
ad_new.info()
eq_(ad_new[0].extname(), "MDF")
eq_(ad_new[0].extver(), None)
def test16():
"""ASTRODATA-append TEST 16: AUTO NUMBER MDF
"""
ad3 = AstroData(mdfscivardq1)
print "\n >>>>>>> AD NEW <<<<<<<<"
ad_new = AstroData(phu=ad3.phu)
ad_new.info()
print "\n >>>>>>> AD APPEND <<<<<<<<"
ad_new.append(header=ad3[0].header, data=ad3[0].data,\
auto_number=True)
mystr = "ad_new.append(header=ad4[1].header, data=ad4[1].data,"
mystr += " auto_number=True)"
print mystr
print "\n >>>>>>> AD NEW <<<<<<<<"
ad_new.info()
eq_(ad_new[0].extname(), "MDF")
eq_(ad_new[0].extver(), None)
def test11():
"""
ASTRODATA-insert TEST 11: AUTO NUMBER, XVER param allows duplicate XNAM XVER pairs
"""
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
print "\n >>>>>>> AD <<<<<<<<"
ad1.info()
print "\n >>>>>>> AD insert <<<<<<<<"
adsci = ad4['SCI', 1]
print("adsci = ad4['SCI', 1]")
ad1.insert(index=1, extver=2, header=adsci.header, data=adsci.data, \
auto_number=True)
print("ad1.insert(index=1, extver=2, header=adsci.header, \
data=adsci.data, auto_number=True)")
print "\n >>>>>>> AD MODIFIED <<<<<<<<"
ad1.info()
eq_(ad1[1].extname(), "SCI")
eq_(ad1[1].extver(), 2)
def test9():
"""ASTRODATA-insert TEST 9: AUTO NUMBER, XVER param inserts high XVER """
ad1 = AstroData(sci123)
ad4 = AstroData(scivardq123)
print "\n >>>>>>> AD <<<<<<<<"
ad1.hdulist.__delitem__(3)
print("ad1.hdulist.__delitem__(3)")
ad1.info()
print "\n >>>>>>> AD insert <<<<<<<<"
adsci = ad4['VAR', 3]
print("adsci = ad4['VAR', 3]")
print("ad1.insert(index=2, header=adsci.header, data=adsci.data,"
"auto_number=True)")
ad1.insert(index=2, header=adsci.header, data=adsci.data, \
auto_number=True, extver=5)
print "\n >>>>>>> AD MODIFIED <<<<<<<<"
ad1.info()
eq_(ad1[2].extname(), "VAR")
eq_(ad1[2].extver(), 5)
def test14():
"""ASTRODATA-append TEST 14: AUTO NUMBER, given phu, construct sci123"""
ad1 = AstroData(sci123)
print "\n >>>>>>> AD NEW <<<<<<<<"
ad_new = AstroData(phu=ad1.phu)
ad_new.info()
print "\n >>>>>>> AD APPEND <<<<<<<<"
for i in range(1,4):
adsci = ad1['SCI', i]
print("adsci = ad1['SCI', %d]" % i)
ad_new.append(header=adsci.header, data=adsci.data, auto_number=True)
mystr = "ad_new.append(header=adsci.header, data=adsci.data,"
mystr += " auto_number=True)"
print mystr
print "\n >>>>>>> AD NEW <<<<<<<<"
ad_new.info()
eq_(ad_new[0].extname(), "SCI")
eq_(ad_new[0].extver(), 1)
eq_(ad_new[1].extname(), "SCI")
eq_(ad_new[1].extver(), 2)
eq_(ad_new[2].extname(), "SCI")
eq_(ad_new[2].extver(), 3)
