def model(pars, hostname='dum', processor=1):
# ATS ##############################################################################
# Modify base ats xml input file and run ats
branchName = "hillslope-fieldParams_18Dec18"
fname = branchName + "-" + str(pars['bac']) + "bac_" + str(
pars['bct']) + "bct"
m = atsxml.get_root('../test7_' + branchName + '_template' +
'_18Dec18_UncrashedRuns' + '_input.xml')
atsxml.replace_by_path(
m, ['mesh', 'domain', 'read mesh file parameters', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain acrotelm', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain catotelm', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain mineral', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain bedrock', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(
m, ['regions', 'surface', 'region: labeled set', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(
m, ['regions', 'bottom face', 'region: labeled set', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'state', 'permeability', 'function', 'acrotelm', 'function',
'function-constant', 'value'
], pars['Kac'])
atsxml.replace_by_path(m, [
'state', 'permeability', 'function', 'catotelm', 'function',
'function-constant', 'value'
], pars['Kct'])
atsxml.replace_by_path(m, [
'state', 'permeability', 'function', 'rest domain', 'function',
'function-constant', 'value'
], pars['Kmn'])
atsxml.replace_by_path(
m, ['cycle driver', 'restart from checkpoint file'],
'../checkpoint_files/' + runName + checkpointSuffix + '/' + runName +
checkpointSuffix + '.' + str(pars['RunNum']) + 'checkpoint_last.h5')
atsxml.run(m,
nproc=1,
mpiexec='mpirun',
stdout='stdout.out',
stderr='stdout.err',
cpuset=processor)
return True
def model(pars, hostname='dum', processor=1):
# ATS ##############################################################################
# Modify base ats xml input file and run ats
branchName = "Paper2_ParamSweep_300m"
fname = branchName + "-" + str(pars['bac']) + "bac_" + str(
pars['bct']) + "bct"
m = atsxml.get_root('../test7_' +
'Paper2_NoCheckpoint_NoVerbosity_Default.xml')
atsxml.replace_by_path(
m, ['mesh', 'domain', 'read mesh file parameters', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain acrotelm', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain catotelm', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain mineral', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain bedrock', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(
m, ['regions', 'surface', 'region: labeled set', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(
m, ['regions', 'bottom face', 'region: labeled set', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'state', 'permeability', 'function', 'acrotelm', 'function',
'function-constant', 'value'
], pars['Kac'])
atsxml.replace_by_path(m, [
'state', 'permeability', 'function', 'catotelm', 'function',
'function-constant', 'value'
], pars['Kct'])
atsxml.replace_by_path(m, [
'state', 'permeability', 'function', 'rest domain', 'function',
'function-constant', 'value'
], pars['Kmn'])
atsxml.run(m,
nproc=1,
mpiexec='mpirun',
stdout='stdout.out',
stderr='stdout.err',
cpuset=processor)
return True
def model(pars, hostname='dum', processor=1):
# ATS ##############################################################################
# Modify base ats xml input file and run ats
branchName = "hillslope-30mSuite"
fname = branchName + "-" + str(pars['slope']) + "m_" + str(
pars['bac']) + "bac_" + str(pars['bct']) + "bct"
m = atsxml.get_root('../test7_' + branchName + '_template_' + runName +
suffix + '.xml')
atsxml.replace_by_path(
m, ['mesh', 'domain', 'read mesh file parameters', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain acrotelm', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain catotelm', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain mineral', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(m, [
'regions', 'computational domain bedrock', 'region: labeled set',
'file'
], '../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(
m, ['regions', 'surface', 'region: labeled set', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(
m, ['regions', 'bottom face', 'region: labeled set', 'file'],
'../../mesh/' + branchName + '/' + fname + '.exo')
atsxml.replace_by_path(
m, ['cycle driver', 'restart from checkpoint file'],
'../checkpoint_files/' + runName + checkpointRunName +
'_checkpoint_files/checkpoint_' + fname + '.h5')
atsxml.run(m,
nproc=1,
mpiexec='mpirun',
stdout='stdout.out',
stderr='stdout.err',
cpuset=processor)
return True
def model(pars,hostname,processor):
# Modify base ats xml input file with pars dictionary and run ats
m = atsxml.get_root('../test7-v_fwd.xml')
atsxml.replace_by_path(m,['base_porosity','rest domain','value'],pars['poro_m'])
atsxml.replace_by_path(m,['base_porosity','peat','value'],pars['poro_p'])
atsxml.replace_by_path(m,['permeability','rest domain','value'],10**pars['perm_m'])
atsxml.replace_by_path(m,['permeability','peat','value'],10**pars['perm_p'])
atsxml.run(m,nproc=4,stdout='stdout.out',stderr='stdout.err',cpuset=processor)
# Read results from ats visualization files
#keys,times,file handle
k,t,f = parse_ats.readATS()
# Collect point at middle of polygon 1 m deep
# x,z = 7.17946807, 4.65764252
# index for this location is 1733, see below how to find this
# Create output dictionary that matches MATK observations
out = {}
out['Sl'] = f[u'saturation_liquid.cell.0/'+k[-1]][1733]
out['T'] = f[u'temperature.cell.0/'+k[-1]][1733]
# Return simulated values of interest
return out