def performance_plot(experiment, best_vals):
best_objectives = np.array([[trial.objective_mean for trial in experiment.trials.values()]])
best_objective_plot = optimization_trace_single_method(
y=np.minimum.accumulate(best_objectives, axis=1),
optimum=best_vals[0]['loss'],
title="Model performance vs. # of iterations",
ylabel="loss")
render(best_objective_plot)
def plot_all(model, objectives, name="", rend=False):
for o in objectives:
plot = plot_contour(
model=model,
param_x="roll-p",
param_y="roll-d",
metric_name=o,
)
plot[0]['layout']['title'] = o
data = plot[0]['data']
lay = plot[0]['layout']
for i, d in enumerate(data):
if i > 1:
d['cliponaxis'] = False
fig = {
"data": data,
"layout": lay,
}
go.Figure(fig).write_image(name + o + ".png")
if rend: render(plot)
def mems_exp(cfg):
log.info("============= Configuration =============")
log.info(f"Config:\n{cfg.pretty()}")
log.info("=========================================")
search_space = gen_search_space(cfg.problem)
outcome_con = gen_outcome_constraints(cfg.problem)
exp = SimpleExperiment(
name=cfg.problem.name,
search_space=SearchSpace(search_space),
evaluation_function=jumper,
objective_name="Energy_(uJ)",
minimize=False,
outcome_constraints=outcome_con,
)
optimization_config = OptimizationConfig(objective=Objective(
metric=MEMsMetric(name="Energy_(uJ)"),
minimize=False,
), )
class MyRunner(Runner):
def run(self, trial):
return {"name": str(trial.index)}
exp.runner = MyRunner()
exp.optimization_config = optimization_config
from ax.utils.notebook.plotting import render, init_notebook_plotting
from ax.plot.contour import plot_contour
print(f"Running {cfg.bo.random} Sobol initialization trials...")
sobol = Models.SOBOL(exp.search_space)
num_search = cfg.bo.random
for i in range(num_search):
exp.new_trial(generator_run=sobol.gen(1))
exp.trials[len(exp.trials) - 1].run()
# data = exp.fetch_data()
num_opt = cfg.bo.optimized
for i in range(num_opt):
if (i % 5) == 0 and cfg.plot_during:
plot = plot_contour(
model=gpei,
param_x="N",
param_y="L",
metric_name="Energy_(uJ)",
)
data = plot[0]['data']
lay = plot[0]['layout']
render(plot)
print(f"Running GP+EI optimization trial {i + 1}/{num_opt}...")
# Reinitialize GP+EI model at each step with updated data.
batch = exp.new_trial(generator_run=gpei.gen(1))
gpei = Models.BOTORCH(experiment=exp, data=exp.eval())
plot_learn = plot_learning(exp, cfg)
# go.Figure(plot_learn).show()
save_fig([plot_learn], "optimize")
from ax.utils.notebook.plotting import render, init_notebook_plotting
from ax.plot.contour import plot_contour
plot = plot_contour(model=gpei,
param_x="N",
param_y="L",
metric_name="Energy_(uJ)",
lower_is_better=cfg.metric.minimize)
save_fig(plot, dir=f"N_L_Energy")
# render(plot)
plot = plot_contour(model=gpei,
param_x="N",
param_y="w",
metric_name="Energy_(uJ)",
lower_is_better=cfg.metric.minimize)
# render(plot)
save_fig(plot, dir=f"N_w_Energy")
plot = plot_contour(model=gpei,
param_x="w",
param_y="L",
metric_name="Energy_(uJ)",
lower_is_better=cfg.metric.minimize)
save_fig(plot, dir=f"w_L_Energy")
def mems_exp(cfg):
log.info("============= Configuration =============")
log.info(f"Config:\n{cfg.pretty()}")
log.info("=========================================")
raise NotImplementedError("TODO load experimental data and verify likelihood of differnet points")
search_space = gen_search_space(cfg.problem)
outcome_con = gen_outcome_constraints(cfg.problem)
exp = SimpleExperiment(
name=cfg.problem.name,
search_space=SearchSpace(search_space),
evaluation_function=jumper,
objective_name="Energy_(uJ)",
minimize=False,
outcome_constraints=outcome_con,
)
optimization_config = OptimizationConfig(
objective=Objective(
metric=MEMsMetric(name="Energy_(uJ)"),
minimize=False,
),
)
class MyRunner(Runner):
def run(self, trial):
return {"name": str(trial.index)}
exp.runner = MyRunner()
exp.optimization_config = optimization_config
from ax.utils.notebook.plotting import render, init_notebook_plotting
from ax.plot.contour import plot_contour
print(f"Running {cfg.bo.random} Sobol initialization trials...")
sobol = Models.SOBOL(exp.search_space)
num_search = cfg.bo.random
for i in range(num_search):
exp.new_trial(generator_run=sobol.gen(1))
exp.trials[len(exp.trials) - 1].run()
# data = exp.fetch_data()
num_opt = cfg.bo.optimized
for i in range(num_opt):
if (i % 5) == 0 and cfg.plot_during:
plot = plot_contour(model=gpei,
param_x="N",
param_y="L",
metric_name="Energy_(uJ)", )
data = plot[0]['data']
lay = plot[0]['layout']
render(plot)
print(f"Running GP+EI optimization trial {i + 1}/{num_opt}...")
# Reinitialize GP+EI model at each step with updated data.
batch = exp.new_trial(generator_run=gpei.gen(1))
gpei = Models.BOTORCH(experiment=exp, data=exp.eval())
gpei = Models.BOTORCH(experiment=exp, data=exp.eval())
from ax.models.torch.botorch_defaults import predict_from_model
import torch
X = torch.Tensor([[2, 7e-4, 1e-4], [1, 5e-4, 1e-4]]).double()
mean, cov = predict_from_model(gpei.model.model, X)
# X(Tensor) – n x d parameters
ll = log_likelihood(X, mean, cov)
plot_ll(ll)
def hyperparam_plot(exp_model, param_x, param_y):
render(plot_contour(exp_model, param_x, param_y, metric_name='loss'))
# for i in range(25):
# parameters, trial_index = ax_client.get_next_trial()
# # Local evaluation here can be replaced with deployment to external system.
# ax_client.complete_trial(trial_index=trial_index, raw_data=evaluate(parameters))
# # _, trial_index = ax_client.get_next_trial()
# ax_client.log_trial_failure(trial_index=trial_index)
#
# ax_client.get_trials_data_frame().sort_values('trial_index')
# best_parameters, values = ax_client.get_best_parameters()
from ax.utils.notebook.plotting import render, init_notebook_plotting
from ax.plot.contour import plot_contour
plot = plot_contour(
model=gpei,
param_x=opt_list[0],
param_y=opt_list[1],
metric_name="base",
)
render(plot)
ax_client.generation_strategy.model = gpei
init_notebook_plotting(offline=True)
# render(ax_client.get_contour_plot())
render(ax_client.get_contour_plot(param_x=opt_list[0],
param_y=opt_list[0])) #, metric_name=base))
# render(ax_client.get_optimization_trace(objective_optimum=hartmann6.fmin)) # Objective_optimum is optional.
ax_client.save_to_json_file() # For custom filepath, pass `filepath` argument.
restored_ax_client = AxClient.load_from_json_file(
) # For custom filepath, pass `filepath` argument.
)
generatorRun = EHVImodel.gen(1)
trial = EHVIexperiment.new_trial(generator_run=generatorRun)
trial.run()
EHVIdata = Data.from_multiple_data([EHVIdata, trial.fetch_data()])
exp_df = exp_to_df(EHVIexperiment)
outcomes = np.array(exp_df[['Accuracy', 'BitCost']], dtype=np.double)
try:
hv = observed_hypervolume(modelbridge=EHVImodel)
except:
hv = 0
print("Failed to compute hv")
EHVIhvList.append(hv)
print(f"Iteration: {i}, HV: {hv}")
EHVIoutcomes = np.array(exp_to_df(EHVIexperiment)[['Accuracy', 'BitCost']],
dtype=np.double)
frontier = compute_pareto_frontier(
experiment=EHVIexperiment,
data=EHVIexperiment.fetch_data(),
primary_objective=metric_a,
secondary_objective=metric_b,
absolute_metrics=["Accuracy", "BitCost"],
num_points=25,
)
render(plot_pareto_frontier(frontier, CI_level=0.90))
"bounds": [256, 2048],
"log_scale": False
},
{
"name": "batch_size",
"type": "choice",
"values": [32, 64, 128, 256, 512]
},
],
evaluation_function=train_evaluate,
objective_name='accuracy',
# generation_strategy=ax.models.random.sobol.SobolGenerator,
)
# import pdb; pdb.set_trace()
render(
plot_contour(model=model,
param_x='lr',
param_y='training_split',
metric_name='accuracy'))
print(best_parameters, values[0])
best_objectives = np.array(
[[trial.objective_mean * 100 for trial in experiment.trials.values()]])
best_objective_plot = optimization_trace_single_method(
y=np.maximum.accumulate(best_objectives, axis=1),
title="Model performance vs. # of iterations",
ylabel="Classification Accuracy, %",
)
render(best_objective_plot)
