def __init__(self, *args, **kwargs): """ """ BasicOrf.__init__(self, *args, **kwargs) # list for tcode scores on certain positions self._tcode_score_list = [None] * self.length # list for tcode scores on certain positions # status options are # None no score for this position) # -1 Non-coding # 0 No opinion # 1 Coding self._tcode_status_list = [None] * self.length self._tcode2status = {'Non-coding': -1, 'No opinion': 0, 'Coding': 1} self._tcode_stats = () self._RAW_TCODE_DATA = []
def __init__(self,*args,**kwargs): """ """ BasicOrf.__init__(self,*args,**kwargs) # list for tcode scores on certain positions self._tcode_score_list = [None]*self.length # list for tcode scores on certain positions # status options are # None no score for this position) # -1 Non-coding # 0 No opinion # 1 Coding self._tcode_status_list = [None]*self.length self._tcode2status = { 'Non-coding': -1, 'No opinion': 0, 'Coding': 1 } self._tcode_stats = () self._RAW_TCODE_DATA = []
def __init__(self,*args,**kwargs): """ """ BasicOrf.__init__(self,*args,**kwargs) # data attributes for splice sites and TSS on this orf self._donor_sites = [] self._acceptor_sites = [] self._has_donor_sites_predicted = False self._has_acceptor_sites_predicted = False self._projected_donor_sites = [] self._projected_acceptor_sites = [] self._tss_sites = [] self._has_tss_predicted = False self._signalp_sites = [] self._has_signalp_sites_predicted = False # attributes that hold the settings with which # pssm sites are searched for self.TSS_MIN_PSSM_SCORE = None self.MIN_ACCEPTOR_PSSM_SCORE = None self.MIN_DONOR_PSSM_SCORE = None
def __init__(self, *args, **kwargs): """ """ BasicOrf.__init__(self, *args, **kwargs) TcodeOrf.__init__(self, *args, **kwargs) CodingOrf.__init__(self, *args, **kwargs)
def __init__(self,*args,**kwargs): """ """ BasicOrf.__init__(self,*args,**kwargs) TcodeOrf.__init__(self,*args,**kwargs) CodingOrf.__init__(self,*args,**kwargs)