def _print_control_summary(call_file, align_bam, config, params, out):
for expect in config["expected"]:
out_info = {"file": align_bam, "region": expect["name"], "calls": []}
out_info.update(params)
counts, calls, wrong = mixed.compare_files(call_file, expect["file"],
expect["offset"], True)
_print_expect_info(expect["name"], counts, calls)
_print_wrong_info(wrong)
for percent, vals in counts.items():
vals["percent"] = percent
out_info["calls"].append(vals)
out.append(out_info)
print_summary_counts(out_info)
return out
def _print_control_summary(call_file, align_bam, config, params, out):
all_train = []
for expect in config["expected"]:
out_info = {"file": align_bam, "region": expect["name"], "calls": []}
out_info.update(params)
counts, calls, train = mixed.compare_files(call_file, expect["file"],
expect["offset"], True)
all_train.extend(filter(_check_training, train))
_print_expect_info(expect["name"], counts, calls)
for percent, vals in counts.items():
vals["percent"] = percent
out_info["calls"].append(vals)
out.append(out_info)
print_summary_counts(out_info)
_write_train_info(all_train, align_bam, config)
return out