def test_line_numbers(self):
"""Test the line number follow-through."""
statements = [
'# Set document-defined annotation values\n',
'SET Species = 9606',
'SET Tissue = "t-cells"',
'# Create an Evidence Line for a block of BEL Statements',
'SET Evidence = "Here we show that interfereon-alpha (IFNalpha) is a potent producer \\',
'of SOCS expression in human T cells, as high expression of CIS, SOCS-1, SOCS-2, \\',
'and SOCS-3 was detectable after IFNalpha stimulation. After 4 h of stimulation \\',
'CIS, SOCS-1, and SOCS-3 had ret'
]
result = list(sanitize_file_lines(statements))
expect = [
(2, 'SET Species = 9606'),
(3, 'SET Tissue = "t-cells"'),
(5,
'SET Evidence = "Here we show that interfereon-alpha (IFNalpha) is a potent producer of SOCS expression '
'in human T cells, as high expression of CIS, SOCS-1, SOCS-2, and SOCS-3 was detectable after IFNalpha '
'stimulation. After 4 h of stimulation CIS, SOCS-1, and SOCS-3 had ret')
]
self.assertEqual(expect, result)
def test_sanitize_comment(self):
"""Test that comments are sanitized."""
s = [
'SET Evidence = "yada yada yada" //this is a comment'
]
result = list(sanitize_file_lines(s))
expect = [(1, 'SET Evidence = "yada yada yada"')]
self.assertEqual(expect, result)
def test_multiple_missing_line_breaks_2(self):
"""Test forgotten delimiters."""
s = [
'SET Evidence = "Something',
'or other',
'or other"'
]
result = list(sanitize_file_lines(s))
expect = [(1, 'SET Evidence = "Something or other or other"')]
self.assertEqual(expect, result)
def _help_test_line(self, statement: str, expect: str) -> None:
lines = list(sanitize_file_lines(statement.split('\n')))
self.assertEqual(1, len(lines))
line = lines[0][1]
self.assertEqual(expect, line)
def test_count(self):
"""Test that the right number of lines are retrieved."""
lines = simple.splitlines()
lines = list(sanitize_file_lines(lines))
self.assertEqual(26, len(lines))