def test_sumaclust_denovo_cluster(self):
""" Test de novo clustering with SumaClust """
result_path = join(self.output_dir, "sumaclust_otus.txt")
clusters = sumaclust_denovo_cluster(seq_path=self.file_read_seqs,
result_path=result_path)
self.files_to_remove.append(result_path)
self.check_clusters(clusters, result_path)
def test_exact_clustering(self):
""" SumaClust's actual clusters should match
the exact clusters when using the exact option
"""
result_path = join(self.output_dir, "sumaclust_otus_exact.txt")
clusters = sumaclust_denovo_cluster(seq_path=self.file_read_seqs,
result_path=result_path,
shortest_len=True,
similarity=0.97,
threads=1,
exact=True)
self.files_to_remove.append(result_path)
self.check_clusters(clusters, result_path)
