def __call__(self):
ar = self.context
workflow = getToolByName(self.context, 'portal_workflow')
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# Contacts get expanded for view
contact = self.context.getContact()
contacts = []
for cc in self.context.getCCContact():
contacts.append(cc)
if contact in contacts:
contacts.remove(contact)
ccemails = []
for cc in contacts:
ccemails.append(
"%s <<a href='mailto:%s'>%s</a>>" %
(cc.Title(), cc.getEmailAddress(), cc.getEmailAddress()))
# CC Emails become mailto links
emails = self.context.getCCEmails()
if isinstance(emails, str):
emails = emails and [
emails,
] or []
cc_emails = []
cc_hrefs = []
for cc in emails:
cc_emails.append(cc)
cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc))
# render header table
self.header_table = HeaderTableView(self.context, self.request)()
# Create Partitions View for this ARs sample
p = SamplePartitionsView(self.context.getSample(), self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
# Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(
ar,
self.request,
getPointOfCapture=poc,
show_categories=self.context.bika_setup.
getCategoriseAnalysisServices())
t.allow_edit = True
t.form_id = "%s_analyses" % poc
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
t.show_workflow_action_buttons = True
t.show_select_column = True
if getSecurityManager().checkPermission(EditFieldResults, self.context) \
and poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
# Un-captured field analyses may cause confusion
if ar.getAnalyses(getPointOfCapture='field',
review_state=['sampled', 'sample_due']):
message = _("There are field analyses without submitted results.")
self.addMessage(message, 'info')
# Create QC Analyses View for this AR
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
qcview = self.createQCAnalyesView(ar,
self.request,
show_categories=show_cats)
qcview.allow_edit = False
qcview.show_select_column = False
qcview.show_workflow_action_buttons = False
qcview.form_id = "%s_qcanalyses"
qcview.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.qctable = qcview.contents_table()
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(),
'review_state')
if status not in ['retracted', 'to_be_verified', 'verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
self.addMessage("General Retract Done", 'warning')
# If is a retracted AR, show the link to child AR and show a warn msg
if workflow.getInfoFor(ar, 'review_state') == 'invalid':
childar = hasattr(ar, 'getChildAnalysisRequest') \
and ar.getChildAnalysisRequest() or None
message = _(
'These results have been withdrawn and are '
'listed here for trace-ability purposes. Please follow '
'the link to the retest')
if childar:
message = (message + " %s.") % childar.getRequestID()
else:
message = message + "."
self.addMessage(message, 'warning')
# If is an AR automatically generated due to a Retraction, show it's
# parent AR information
if hasattr(ar, 'getParentAnalysisRequest') \
and ar.getParentAnalysisRequest():
par = ar.getParentAnalysisRequest()
message = _(
'This Analysis Request has been '
'generated automatically due to '
'the retraction of the Analysis '
'Request ${retracted_request_id}.',
mapping={'retracted_request_id': par.getRequestID()})
self.addMessage(message, 'info')
self.renderMessages()
return self.template()
def __init__(self, context, request):
super(AnalysisRequestAnalysesView, self).__init__(context, request)
self.catalog = "bika_setup_catalog"
self.contentFilter = {'portal_type': 'AnalysisService',
'sort_on': 'sortable_title',
'inactive_state': 'active', }
self.context_actions = {}
self.icon = self.portal_url + "/++resource++bika.lims.images/analysisrequest_big.png"
self.title = self.context.Title()
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = True
self.table_only = True
self.show_select_all_checkbox = False
self.pagesize = 999999
self.categories = []
self.do_cats = self.context.bika_setup.getCategoriseAnalysisServices()
if self.do_cats:
self.show_categories = True
self.expand_all_categories = False
self.ajax_categories = True
self.category_index = 'getCategoryTitle'
self.columns = {
'Title': {'title': _('Service'),
'index': 'sortable_title',
'sortable': False, },
'Hidden': {'title': _('Hidden'),
'sortable': False,
'type': 'boolean', },
'Price': {'title': _('Price'),
'sortable': False, },
'Priority': {'title': _('Priority'),
'sortable': False,
'index': 'Priority',
'toggle': True },
'Partition': {'title': _('Partition'),
'sortable': False, },
'min': {'title': _('Min')},
'max': {'title': _('Max')},
'error': {'title': _('Permitted Error %')},
}
columns = ['Title', 'Hidden', ]
ShowPrices = self.context.bika_setup.getShowPrices()
if ShowPrices:
columns.append('Price')
columns.append('Priority')
ShowPartitions = self.context.bika_setup.getShowPartitions()
if ShowPartitions:
columns.append('Partition')
EnableARSpecs = self.context.bika_setup.getEnableARSpecs()
if EnableARSpecs:
columns.append('min')
columns.append('max')
columns.append('error')
self.review_states = [
{'id': 'default',
'title': _('All'),
'contentFilter': {},
'columns': columns,
'transitions': [{'id': 'empty'}, ], # none
'custom_actions': [{'id': 'save_analyses_button',
'title': _('Save')}, ],
},
]
# Create Partitions View for this ARs sample
sample = self.context.getSample()
p = SamplePartitionsView(sample, self.request)
p.table_only = True
p.allow_edit = False
p.form_id = "parts"
p.show_select_column = False
p.show_table_footer = False
p.review_states[0]['transitions'] = [{'id': 'empty'}, ] # none
p.review_states[0]['custom_actions'] = []
p.review_states[0]['columns'] = ['PartTitle',
'getContainer',
'getPreservation',
'state_title']
self.parts = p.contents_table()
def __init__(self, context, request):
super(AnalysisRequestAnalysesView, self).__init__(context, request)
self.catalog = "bika_setup_catalog"
self.contentFilter = {'portal_type': 'AnalysisService',
'sort_on': 'sortable_title',
'inactive_state': 'active', }
self.context_actions = {}
self.icon = self.portal_url + "/++resource++bika.lims.images/analysisrequest_big.png"
self.title = self.context.Title()
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = True
self.table_only = True
self.show_select_all_checkbox = False
self.pagesize = 0
self.columns = {
'Title': {'title': _('Service'),
'index': 'sortable_title',
'sortable': False, },
'Price': {'title': _('Price'),
'sortable': False, },
'Priority': {'title': _('Priority'),
'sortable': False,
'index': 'Priority',
'toggle': True },
'Partition': {'title': _('Partition'),
'sortable': False, },
'min': {'title': _('Min')},
'max': {'title': _('Max')},
'error': {'title': _('Permitted Error %')},
}
columns = ['Title', ]
ShowPrices = self.context.bika_setup.getShowPrices()
if ShowPrices:
columns.append('Price')
columns.append('Priority')
ShowPartitions = self.context.bika_setup.getShowPartitions()
if ShowPartitions:
columns.append('Partition')
EnableARSpecs = self.context.bika_setup.getEnableARSpecs()
if EnableARSpecs:
columns.append('min')
columns.append('max')
columns.append('error')
self.review_states = [
{'id': 'default',
'title': _('All'),
'contentFilter': {},
'columns': columns,
'transitions': [{'id': 'empty'}, ], # none
'custom_actions': [{'id': 'save_analyses_button',
'title': _('Save')}, ],
},
]
# Create Partitions View for this ARs sample
sample = self.context.getSample()
p = SamplePartitionsView(sample, self.request)
p.table_only = True
p.allow_edit = False
p.form_id = "parts"
p.show_select_column = False
p.show_table_footer = False
p.review_states[0]['transitions'] = [{'id': 'empty'}, ] # none
p.review_states[0]['custom_actions'] = []
p.review_states[0]['columns'] = ['PartTitle',
'getContainer',
'getPreservation',
'state_title']
self.parts = p.contents_table()
def __call__(self):
ar = self.context
workflow = getToolByName(self.context, 'portal_workflow')
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# Contacts get expanded for view
contact = self.context.getContact()
contacts = []
for cc in self.context.getCCContact():
contacts.append(cc)
if contact in contacts:
contacts.remove(contact)
ccemails = []
for cc in contacts:
ccemails.append("%s <<a href='mailto:%s'>%s</a>>"
% (cc.Title(), cc.getEmailAddress(), cc.getEmailAddress()))
# CC Emails become mailto links
emails = self.context.getCCEmails()
if isinstance(emails, str):
emails = emails and [emails, ] or []
cc_emails = []
cc_hrefs = []
for cc in emails:
cc_emails.append(cc)
cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc))
# render header table
self.header_table = HeaderTableView(self.context, self.request)()
# Create Partitions View for this ARs sample
p = SamplePartitionsView(self.context.getSample(), self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
# Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(
ar,
self.request,
getPointOfCapture=poc,
show_categories=self.context.bika_setup.getCategoriseAnalysisServices())
t.allow_edit = True
t.form_id = "%s_analyses" % poc
t.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
t.show_workflow_action_buttons = True
t.show_select_column = True
if getSecurityManager().checkPermission(EditFieldResults, self.context) \
and poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
# Create QC Analyses View for this AR
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
qcview = self.createQCAnalyesView(ar,
self.request,
show_categories=show_cats)
qcview.allow_edit = False
qcview.show_select_column = False
qcview.show_workflow_action_buttons = False
qcview.form_id = "%s_qcanalyses"
qcview.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
self.qctable = qcview.contents_table()
# Create the ResultsInterpretation by department view
from resultsinterpretation import ARResultsInterpretationView
self.riview = ARResultsInterpretationView(ar, self.request)
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(), 'review_state')
if status not in ['retracted', 'to_be_verified', 'verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
message = "General Retract Done. Submit this AR manually."
self.addMessage(message, 'warning')
# If is a retracted AR, show the link to child AR and show a warn msg
if workflow.getInfoFor(ar, 'review_state') == 'invalid':
childar = hasattr(ar, 'getChildAnalysisRequest') and \
ar.getChildAnalysisRequest() or None
message = _('These results have been withdrawn and are '
'listed here for trace-ability purposes. Please follow '
'the link to the retest')
if childar:
message = (message + " %s.") % childar.getRequestID()
else:
message = message + "."
self.addMessage(message, 'warning')
# If is an AR automatically generated due to a Retraction, show it's
# parent AR information
if hasattr(ar, 'getParentAnalysisRequest') and \
ar.getParentAnalysisRequest():
par = ar.getParentAnalysisRequest()
message = _('This Analysis Request has been '
'generated automatically due to '
'the retraction of the Analysis '
'Request ${retracted_request_id}.',
mapping={'retracted_request_id': par.getRequestID()})
self.addMessage(message, 'info')
self.renderMessages()
return self.template()
def __init__(self, context, request):
super(AnalysisRequestAnalysesView, self).__init__(context, request)
self.catalog = "bika_setup_catalog"
self.contentFilter = {
'portal_type': 'AnalysisService',
'sort_on': 'sortable_title',
'sort_order': 'ascending',
'inactive_state': 'active',
}
self.sort_on = 'sortable_title'
self.sort_order = 'ascending'
self.context_actions = {}
self.icon = self.portal_url + \
"/++resource++bika.lims.images/analysisrequest_big.png"
self.title = self.context.Title()
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = True
self.table_only = True
self.show_select_all_checkbox = False
self.pagesize = 999999
self.categories = []
self.do_cats = self.context.bika_setup.getCategoriseAnalysisServices()
if self.do_cats:
self.show_categories = True
self.expand_all_categories = False
self.ajax_categories = True
self.category_index = 'getCategoryTitle'
self.columns = {
'Title': {
'title': _('Service'),
'index': 'sortable_title',
'sortable': False,
},
'Unit': {
'title': _('Unit'),
'sortable': False,
},
'Hidden': {
'title': _('Hidden'),
'sortable': False,
'type': 'boolean',
},
'Price': {
'title': _('Price'),
'sortable': False,
},
'Partition': {
'title': _('Partition'),
'sortable': False,
'type': 'choices'
},
'warn_min': {
'title': _('Min warn')
},
'min': {
'title': _('Min')
},
'max': {
'title': _('Max')
},
'warn_max': {
'title': _('Max warn')
},
}
columns = [
'Title',
'Unit',
'Hidden',
]
ShowPrices = self.context.bika_setup.getShowPrices()
if ShowPrices:
columns.append('Price')
ShowPartitions = self.context.bika_setup.getShowPartitions()
if ShowPartitions:
columns.append('Partition')
EnableARSpecs = self.context.bika_setup.getEnableARSpecs()
if EnableARSpecs:
columns.append("warn_min")
columns.append('min')
columns.append('max')
columns.append("warn_max")
self.review_states = [
{
'id':
'default',
'title':
_('All'),
'contentFilter': {
"inactive_state": "active"
},
'columns':
columns,
'transitions': [
{
'id': 'empty'
},
], # none
'custom_transitions': [{
'id': 'save_analyses_button',
'title': _('Save')
}],
},
]
# Create Partitions View for this ARs sample
sample = self.context.getSample()
p = SamplePartitionsView(sample, self.request)
p.table_only = True
p.allow_edit = False
p.form_id = "parts"
p.show_select_column = False
p.show_table_footer = False
p.review_states[0]['transitions'] = [
{
'id': 'empty'
},
] # none
p.review_states[0]['custom_transitions'] = []
p.review_states[0]['columns'] = [
'PartTitle', 'getContainer', 'getPreservation', 'state_title'
]
self.parts = p.contents_table()
def __call__(self):
ar = self.context
workflow = getToolByName(self.context, 'portal_workflow')
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# If the analysis request has been received and hasn't been yet
# verified yet, redirect the user to manage_results view, but only if
# the user has privileges to Edit(Field)Results, cause otherwise she/he
# will receive an InsufficientPrivileges error!
if (self.request.PATH_TRANSLATED.endswith(self.context.id)
and check_permission(EditResults, self.context)
and check_permission(EditFieldResults, self.context)
and wasTransitionPerformed(self.context, 'receive')
and not wasTransitionPerformed(self.context, 'verify')):
# Redirect to manage results view if not cancelled
if api.get_workflow_status_of(ar, 'cancellation_state') != \
"cancelled":
manage_results_url = "/".join(
[self.context.absolute_url(), 'manage_results'])
self.request.response.redirect(manage_results_url)
return
# Contacts get expanded for view
contact = self.context.getContact()
contacts = []
for cc in self.context.getCCContact():
contacts.append(cc)
if contact in contacts:
contacts.remove(contact)
ccemails = []
for cc in contacts:
ccemails.append(
"%s <<a href='mailto:%s'>%s</a>>" %
(cc.Title(), cc.getEmailAddress(), cc.getEmailAddress()))
# CC Emails become mailto links
emails = self.context.getCCEmails()
if isinstance(emails, str):
emails = emails and [
emails,
] or []
cc_emails = []
cc_hrefs = []
for cc in emails:
cc_emails.append(cc)
cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc))
# render header table
self.header_table = HeaderTableView(self.context, self.request)()
# Create Partitions View for this ARs sample
p = SamplePartitionsView(self.context.getSample(), self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
# Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(
ar,
self.request,
getPointOfCapture=poc,
show_categories=self.context.bika_setup.
getCategoriseAnalysisServices(),
getRequestUID=self.context.UID())
t.allow_edit = True
t.form_id = "%s_analyses" % poc
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
t.show_workflow_action_buttons = True
t.show_select_column = True
if getSecurityManager().checkPermission(EditFieldResults, self.context) \
and poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
# Create QC Analyses View for this AR
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
qcview = self.createQCAnalyesView(ar,
self.request,
show_categories=show_cats)
qcview.allow_edit = False
qcview.show_select_column = False
qcview.show_workflow_action_buttons = False
qcview.form_id = "%s_qcanalyses"
qcview.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.qctable = qcview.contents_table()
# Create the ResultsInterpretation by department view
from resultsinterpretation import ARResultsInterpretationView
self.riview = ARResultsInterpretationView(ar, self.request)
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(),
'review_state')
if status not in ['retracted', 'to_be_verified', 'verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
message = "General Retract Done. Submit this AR manually."
self.addMessage(message, 'warning')
# If is a retracted AR, show the link to child AR and show a warn msg
if workflow.getInfoFor(ar, 'review_state') == 'invalid':
childar = hasattr(ar, 'getChildAnalysisRequest') \
and ar.getChildAnalysisRequest() or None
message = _(
'These results have been withdrawn and are '
'listed here for trace-ability purposes. Please follow '
'the link to the retest')
if childar:
message = (message + " %s.") % childar.getId()
else:
message = message + "."
self.addMessage(message, 'warning')
# If is an AR automatically generated due to a Retraction, show it's
# parent AR information
if hasattr(ar, 'getParentAnalysisRequest') \
and ar.getParentAnalysisRequest():
par = ar.getParentAnalysisRequest()
message = _(
'This Analysis Request has been '
'generated automatically due to '
'the retraction of the Analysis '
'Request ${retracted_request_id}.',
mapping={'retracted_request_id': par.getId()})
self.addMessage(message, 'info')
self.renderMessages()
return self.template()
