def ar_analysis_values(self):
ret = []
analyses = self.context.getAnalyses(is_active=True)
for proxy in analyses:
analysis = proxy.getObject()
if proxy.review_state == 'retracted':
# these are scraped up when Retested analyses are found below.
continue
# things that are manually inserted into the analysis.
# These things will be included even if they are not present in
# include_fields in the request.
method = analysis.getMethod()
analysis_data = {
"Uncertainty": analysis.getUncertainty(),
"Method": method.Title() if method else '',
"Unit": analysis.getUnit(),
}
# Place all schema fields ino the result.
analysis_data.update(load_brain_metadata(proxy, []))
# Place all schema fields ino the result.
analysis_data.update(load_field_values(analysis, []))
# call any adapters that care to modify the Analysis data.
# adapters = getAdapters((analysis, ), IJSONReadExtender)
# for name, adapter in adapters:
# adapter(request, analysis_data)
if not self.include_fields or "transitions" in self.include_fields:
analysis_data['transitions'] = get_workflow_actions(analysis)
retest_of = analysis.getRetestOf()
if retest_of:
prevs = [{'created': str(retest_of.created()),
'Result': retest_of.getResult(),
'InterimFields': retest_of.getInterimFields()}]
analysis_data['Previous Results'] = prevs
ret.append(analysis_data)
return ret
def ar_analysis_values(self):
ret = []
analyses = self.context.getAnalyses(cancellation_state='active')
for proxy in analyses:
analysis = proxy.getObject()
service = analysis.getService()
if proxy.review_state == 'retracted':
# these are scraped up when Retested analyses are found below.
continue
# things that are manually inserted into the analysis.
# These things will be included even if they are not present in
# include_fields in the request.
method = analysis.getMethod()
if not method:
method = service.getMethod()
service = analysis.getService()
hs = hasattr(analysis, "specification")
analysis_data = {
"Uncertainty": service.getUncertainty(analysis.getResult()),
"Method": method.Title() if method else '',
"specification": analysis.specification if hs else {},
"Unit": service.getUnit(),
}
# Place all schema fields ino the result.
analysis_data.update(load_brain_metadata(proxy, []))
# Place all schema fields ino the result.
analysis_data.update(load_field_values(analysis, []))
# call any adapters that care to modify the Analysis data.
# adapters = getAdapters((analysis, ), IJSONReadExtender)
# for name, adapter in adapters:
# adapter(request, analysis_data)
if not self.include_fields or "transitions" in self.include_fields:
analysis_data['transitions'] = get_workflow_actions(analysis)
if analysis.getRetested():
retracted = self.context.getAnalyses(review_state='retracted',
title=analysis.Title(),
full_objects=True)
prevs = sorted(retracted, key=lambda item: item.created())
prevs = [{'created': str(p.created()),
'Result': p.getResult(),
'InterimFields': p.getInterimFields()}
for p in prevs]
analysis_data['Previous Results'] = prevs
ret.append(analysis_data)
return ret
def __call__(self):
form = self.request.form
plone.protect.CheckAuthenticator(form)
self.context = aq_inner(self.context)
workflow = getToolByName(self.context, 'portal_workflow')
bc = getToolByName(self.context, 'bika_catalog')
rc = getToolByName(self.context, REFERENCE_CATALOG)
translate = self.context.translate
checkPermission = self.context.portal_membership.checkPermission
# use came_from to decide which UI action was clicked.
# "workflow_action" is the action name specified in the
# portal_workflow transition url.
came_from = "workflow_action"
action = form.get(came_from, '')
if not action and not form.get('bika_listing_filter_bar_submit', ''):
# workflow_action_button is the action name specified in
# the bika_listing_view table buttons.
came_from = "workflow_action_button"
action = form.get('workflow_action_id', '')
if not action:
if self.destination_url == "":
self.destination_url = self.request.get_header(
"referer", self.context.absolute_url())
self.request.response.redirect(self.destination_url)
return
if action == "sample":
message = None
objects = AnalysisRequestWorkflowAction._get_selected_items(self)
transitioned = {'to_be_preserved': [], 'sample_due': []}
for obj_uid, obj in objects.items():
if obj.portal_type == "AnalysisRequest":
ar = obj
sample = obj.getSample()
else:
sample = obj
ar = sample.aq_parent
# can't transition inactive items
if workflow.getInfoFor(sample, 'inactive_state',
'') == 'inactive':
message = _('Sample %s is inactive' % sample.Title())
self.context.plone_utils.addPortalMessage(message, 'error')
continue
transitions = [a['id'] for a in get_workflow_actions(sample)]
if 'sample' not in transitions:
message = _('"Sample" is not a valid action for %s' % \
sample.Title())
self.context.plone_utils.addPortalMessage(message, 'error')
continue
# grab this object's Sampler and DateSampled from the form
# (if the columns are available and edit controls exist)
if 'getSampler' in form and 'getDateSampled' in form:
Sampler = ''
if len(form['getSampler']) > 0 \
and form['getSampler'][0].get(obj_uid):
Sampler = form['getSampler'][0][obj_uid].strip()
DateSampled = ''
if len(form['getDateSampled']) > 0 \
and form['getDateSampled'][0].get(obj_uid):
DateSampled = form['getDateSampled'][0][obj_uid].strip(
)
else:
continue
# write them to the sample
if Sampler:
sample.setSampler(Sampler)
else:
Sampler = sample.getSampler()
if DateSampled:
sample.setDateSampled(DateSampled)
else:
DateSampled = sample.getDateSampled()
sample.reindexObject()
ars = sample.getAnalysisRequests()
# Analyses and AnalysisRequets have calculated fields
# that are indexed; re-index all these objects.
for ar in ars:
ar.reindexObject()
analyses = sample.getAnalyses(
{'review_state': 'to_be_sampled'})
for a in analyses:
a.getObject().reindexObject()
if Sampler and DateSampled:
workflow.doActionFor(sample, action)
new_state = workflow.getInfoFor(sample, 'review_state')
doActionFor(ar, action)
transitioned[new_state].append(sample.Title())
else:
message = _('Both Sampler and Date Sampled are required')
self.context.plone_utils.addPortalMessage(message, 'error')
for state in transitioned:
tlist = transitioned[state]
if len(tlist) > 1:
if state == 'to_be_preserved':
message = _('${items} are waiting for preservation.',
mapping={'items': ', '.join(tlist)})
else:
message = _('${items} are waiting to be received.',
mapping={'items': ', '.join(tlist)})
self.context.plone_utils.addPortalMessage(message, 'info')
elif len(tlist) == 1:
if state == 'to_be_preserved':
message = _('${item} is waiting for preservation.',
mapping={'item': ', '.join(tlist)})
else:
message = _('${item} is waiting to be received.',
mapping={'item': ', '.join(tlist)})
self.context.plone_utils.addPortalMessage(message, 'info')
if not message:
message = _('No changes made.')
self.context.plone_utils.addPortalMessage(message, 'info')
self.destination_url = self.request.get_header(
"referer", self.context.absolute_url())
self.request.response.redirect(self.destination_url)
elif action == "preserve":
objects = AnalysisRequestWorkflowAction._get_selected_items(self)
transitioned = {}
not_transitioned = []
Preserver = str()
DatePreserved = str()
for obj_uid, obj in objects.items():
if obj.portal_type == "AnalysisRequest":
ar = obj
sample = obj.getSample()
else:
sample = obj
ar = sample.aq_parent
# can't transition inactive items
if workflow.getInfoFor(sample, 'inactive_state',
'') == 'inactive':
continue
if not checkPermission(PreserveSample, sample):
continue
# grab this object's Preserver and DatePreserved from the form
# (if the columns are available and edit controls exist)
if 'getPreserver' in form and 'getDatePreserved' in form:
try:
Preserver = form['getPreserver'][0][obj_uid].strip()
DatePreserved = form['getDatePreserved'][0][
obj_uid].strip()
except KeyError:
continue
Preserver = Preserver and Preserver or ''
DatePreserved = DatePreserved and DateTime(
DatePreserved) or ''
else:
continue
for sp in sample.objectValues("SamplePartition"):
if workflow.getInfoFor(
sp, 'review_state') == 'to_be_preserved':
sp.setDatePreserved(DatePreserved)
sp.setPreserver(Preserver)
for sp in sample.objectValues("SamplePartition"):
if workflow.getInfoFor(
sp, 'review_state') == 'to_be_preserved':
if Preserver and DatePreserved:
doActionFor(sp, action)
transitioned[sp.aq_parent.Title()] = sp.Title()
else:
not_transitioned.append(sp)
if len(transitioned.keys()) > 1:
message = _('${items}: partitions are waiting to be received.',
mapping={'items': ', '.join(transitioned.keys())})
else:
message = _('${item}: ${part} is waiting to be received.',
mapping={
'item': ', '.join(transitioned.keys()),
'part': ', '.join(transitioned.values()),
})
self.context.plone_utils.addPortalMessage(message, 'info')
# And then the sample itself
if Preserver and DatePreserved and not not_transitioned:
doActionFor(sample, action)
#message = _('${item} is waiting to be received.',
# mapping = {'item': sample.Title()})
#message = t(message)
#self.context.plone_utils.addPortalMessage(message, 'info')
self.destination_url = self.request.get_header(
"referer", self.context.absolute_url())
self.request.response.redirect(self.destination_url)
elif action in ('prepublish', 'publish', 'republish'):
# We pass a list of AR objects to Publish.
# it returns a list of AR IDs which were actually published.
objects = AnalysisRequestWorkflowAction._get_selected_items(self)
its = []
for uid, obj in objects.items():
if isActive(obj):
its.append(uid)
its = ",".join(its)
q = "/publish?items=" + its
dest = self.portal_url + "/analysisrequests" + q
self.request.response.redirect(dest)
else:
AnalysisRequestWorkflowAction.__call__(self)
def __call__(self):
form = self.request.form
plone.protect.CheckAuthenticator(form)
self.context = aq_inner(self.context)
workflow = getToolByName(self.context, 'portal_workflow')
bc = getToolByName(self.context, 'bika_catalog')
rc = getToolByName(self.context, REFERENCE_CATALOG)
translate = self.context.translate
checkPermission = self.context.portal_membership.checkPermission
# use came_from to decide which UI action was clicked.
# "workflow_action" is the action name specified in the
# portal_workflow transition url.
came_from = "workflow_action"
action = form.get(came_from, '')
if not action and not form.get('bika_listing_filter_bar_submit', ''):
# workflow_action_button is the action name specified in
# the bika_listing_view table buttons.
came_from = "workflow_action_button"
action = form.get('workflow_action_id', '')
if not action:
if self.destination_url == "":
self.destination_url = self.request.get_header("referer",
self.context.absolute_url())
self.request.response.redirect(self.destination_url)
return
if action == "sample":
message = None
objects = AnalysisRequestWorkflowAction._get_selected_items(self)
transitioned = {'to_be_preserved':[], 'sample_due':[]}
for obj_uid, obj in objects.items():
if obj.portal_type == "AnalysisRequest":
ar = obj
sample = obj.getSample()
else:
sample = obj
ar = sample.aq_parent
# can't transition inactive items
if workflow.getInfoFor(sample, 'inactive_state', '') == 'inactive':
message = _('Sample %s is inactive' % sample.Title())
self.context.plone_utils.addPortalMessage(message, 'error')
continue
transitions = [a['id'] for a in get_workflow_actions(sample)]
if 'sample' not in transitions:
message = _('"Sample" is not a valid action for %s' % \
sample.Title())
self.context.plone_utils.addPortalMessage(message, 'error')
continue
# grab this object's Sampler and DateSampled from the form
# (if the columns are available and edit controls exist)
Sampler = ''
DateSampled = ''
if 'getSampler' in form and 'getDateSampled' in form:
if len(form['getSampler']) > 0 \
and form['getSampler'][0].get(obj_uid):
Sampler = form['getSampler'][0][obj_uid].strip()
if len(form['getDateSampled']) > 0 \
and form['getDateSampled'][0].get(obj_uid):
DateSampled = form['getDateSampled'][0][obj_uid].strip()
elif 'sample' in transitions \
or 'getSampler' not in form \
or 'getDateSampled' not in form:
message = _('''Please display both Sampler and Date Sampled
columns''')
self.context.plone_utils.addPortalMessage(message, 'error')
else:
continue
# write them to the sample
if Sampler:
sample.setSampler(Sampler)
else:
Sampler = sample.getSampler()
if DateSampled:
sample.setDateSampled(DateSampled)
else:
DateSampled = sample.getDateSampled()
sample.reindexObject()
ars = sample.getAnalysisRequests()
# Analyses and AnalysisRequets have calculated fields
# that are indexed; re-index all these objects.
for ar in ars:
ar.reindexObject()
analyses = sample.getAnalyses(
{'review_state':'to_be_sampled'})
for a in analyses:
a.getObject().reindexObject()
if Sampler and DateSampled:
workflow.doActionFor(sample, action)
new_state = workflow.getInfoFor(sample, 'review_state')
doActionFor(ar, action)
transitioned[new_state].append(sample.Title())
else:
message = _('Both Sampler and Date Sampled are required')
self.context.plone_utils.addPortalMessage(message, 'error')
for state in transitioned:
tlist = transitioned[state]
if len(tlist) > 1:
if state == 'to_be_preserved':
message = _('${items} are waiting for preservation.',
mapping = {'items': ', '.join(tlist)})
else:
message = _('${items} are waiting to be received.',
mapping = {'items': ', '.join(tlist)})
self.context.plone_utils.addPortalMessage(message, 'info')
elif len(tlist) == 1:
if state == 'to_be_preserved':
message = _('${item} is waiting for preservation.',
mapping = {'item': ', '.join(tlist)})
else:
message = _('${item} is waiting to be received.',
mapping = {'item': ', '.join(tlist)})
self.context.plone_utils.addPortalMessage(message, 'info')
if not message:
message = _('No changes made.')
self.context.plone_utils.addPortalMessage(message, 'info')
self.destination_url = self.request.get_header("referer",
self.context.absolute_url())
self.request.response.redirect(self.destination_url)
elif action == "preserve":
objects = AnalysisRequestWorkflowAction._get_selected_items(self)
transitioned = {}
not_transitioned = []
Preserver = str()
DatePreserved = str()
for obj_uid, obj in objects.items():
if obj.portal_type == "AnalysisRequest":
ar = obj
sample = obj.getSample()
else:
sample = obj
ar = sample.aq_parent
# can't transition inactive items
if workflow.getInfoFor(sample, 'inactive_state', '') == 'inactive':
continue
if not checkPermission(PreserveSample, sample):
continue
# grab this object's Preserver and DatePreserved from the form
# (if the columns are available and edit controls exist)
if 'getPreserver' in form and 'getDatePreserved' in form:
try:
Preserver = form['getPreserver'][0][obj_uid].strip()
DatePreserved = form['getDatePreserved'][0][obj_uid].strip()
except KeyError:
continue
Preserver = Preserver and Preserver or ''
DatePreserved = DatePreserved and DateTime(DatePreserved) or ''
else:
continue
for sp in sample.objectValues("SamplePartition"):
if workflow.getInfoFor(sp, 'review_state') == 'to_be_preserved':
sp.setDatePreserved(DatePreserved)
sp.setPreserver(Preserver)
for sp in sample.objectValues("SamplePartition"):
if workflow.getInfoFor(sp, 'review_state') == 'to_be_preserved':
if Preserver and DatePreserved:
doActionFor(sp, action)
transitioned[sp.aq_parent.Title()] = sp.Title()
else:
not_transitioned.append(sp)
if len(transitioned.keys()) > 1:
message = _('${items}: partitions are waiting to be received.',
mapping = {'items': ', '.join(transitioned.keys())})
else:
message = _('${item}: ${part} is waiting to be received.',
mapping = {'item': ', '.join(transitioned.keys()),
'part': ', '.join(transitioned.values()),})
self.context.plone_utils.addPortalMessage(message, 'info')
# And then the sample itself
if Preserver and DatePreserved and not not_transitioned:
doActionFor(sample, action)
#message = _('${item} is waiting to be received.',
# mapping = {'item': sample.Title()})
#message = t(message)
#self.context.plone_utils.addPortalMessage(message, 'info')
self.destination_url = self.request.get_header(
"referer", self.context.absolute_url())
self.request.response.redirect(self.destination_url)
elif action in ('prepublish', 'publish', 'republish'):
# We pass a list of AR objects to Publish.
# it returns a list of AR IDs which were actually published.
objects = AnalysisRequestWorkflowAction._get_selected_items(self)
its = []
for uid, obj in objects.items():
if isActive(obj):
its.append(uid);
its = ",".join(its)
q = "/publish?items=" + its
dest = self.portal_url+"/analysisrequests" + q
self.request.response.redirect(dest)
else:
AnalysisRequestWorkflowAction.__call__(self)