def test_build_pairs_from_groups_simpleDiad(self): leftA = MockSplitRead("key1", "L", "leftA", "leftFormattedRead") rightA = MockSplitRead("key1", "L", "rightA", "rightFormattedRead") groups = {'key1':([leftA],[rightA])} actual_pairs = _build_pairs_from_groups(groups, MockLogger()) expected=[(leftA, rightA)] self.assertEqual(1, len(actual_pairs)) self.assertEqual(expected, actual_pairs['key1'])
def test_build_pairs_from_groups(self): leftA = MockSplitRead("key1", "L", "leftA", "leftFormattedRead") leftB = MockSplitRead("key1", "L", "leftB", "leftFormattedRead") rightA = MockSplitRead("key1", "R", "rightA", "rightFormattedRead") rightB = MockSplitRead("key1", "R", "rightB", "rightFormattedRead") groups = {'key1':([leftA, leftB], [rightA, rightB])} actual_pairs = _build_pairs_from_groups(groups, MockLogger()) self.assertEqual(1, len(actual_pairs)) ordered_actual_pairs = sorted(actual_pairs['key1'], key=lambda pair: (pair[0]._name, pair[1]._name)) ordered_expected_pairs = [(leftA, rightA), (leftA, rightB), (leftB, rightA), (leftB, rightB)] self.assertEqual(4, len(ordered_actual_pairs)) self.assertEqual(ordered_expected_pairs, ordered_actual_pairs)