Python MRA.build_model_from_text Beispiele

Beispiel #1

def test_replace_agent_one():
    m = MRA()
    m.build_model_from_text('BRAF binds MEK1.')
    m.replace_agent('BRAF', ['RAF1'], 1)
    assert (len(m.statements) == 1)
    assert (len(m.statements[0]) == 1)
    assert((m.statements[0][0].members[0].name == 'RAF1') or\
            (m.statements[0][0].members[1].name == 'RAF1'))

Beispiel #2

Datei: mra_test.py Projekt: sorgerlab/bioagents

def test_replace_agent_one():
    m = MRA()
    m.build_model_from_text('BRAF binds MEK1.')
    m.replace_agent('BRAF', ['RAF1'], 1)
    assert(len(m.statements) == 1)
    assert(len(m.statements[0]) == 1)
    assert((m.statements[0][0].members[0].name == 'RAF1') or\
            (m.statements[0][0].members[1].name == 'RAF1'))

Beispiel #3

def test_build_model_from_text():
    m = MRA()
    model = m.build_model_from_text('MEK1 phosphorylates ERK2.')
    assert (model is not None)
    assert (len(m.statements) == 1)
    assert (len(m.statements[0]) == 1)
    assert (isinstance(m.statements[0][0], indra.statements.Phosphorylation))
    assert (m.statements[0][0].enz.name == 'MAP2K1')
    assert (m.statements[0][0].sub.name == 'MAPK1')

Beispiel #4

Datei: mra_test.py Projekt: sorgerlab/bioagents

def test_build_model_from_text():
    m = MRA()
    model = m.build_model_from_text('MEK1 phosphorylates ERK2.')
    assert(model is not None)
    assert(len(m.statements) == 1)
    assert(len(m.statements[0]) == 1)
    assert(isinstance(m.statements[0][0], indra.statements.Phosphorylation))
    assert(m.statements[0][0].enz.name == 'MAP2K1')
    assert(m.statements[0][0].sub.name == 'MAPK1')