def create_message(self):
txt = 'Selumetinib decreases FOS in BT20 cells'
explain = stmts_clj_from_text(txt)
explain_stmt = self.bioagent.get_statement(explain)[0]
assert explain_stmt.evidence[0].context, explain_stmt.evidence[0]
content = KQMLList('USER-GOAL')
content.set('explain', explain)
msg = get_request(content)
return msg, content
def _get_build_model_request(text, format=None):
content = KQMLList('BUILD-MODEL')
if format == 'ekb':
descr = ekb_kstring_from_text(text)
content.sets('description', descr)
content.sets('format', 'ekb')
else:
descr = stmts_clj_from_text(text)
content.set('description', descr)
return get_request(content), content
def create_hasmech2(self):
content = KQMLList('MODEL-HAS-MECHANISM')
content.set('model-id', '1')
content.sets('description', stmts_clj_from_text('NRAS activates BRAF'))
msg = get_request(content)
return msg, content
def create_remove(self):
content = KQMLList('MODEL-REMOVE-MECHANISM')
content.set('model-id', '1')
content.set('description', stmts_clj_from_text('Unphosphorylated ERK'))
msg = get_request(content)
return msg, content
def create_remove2(self):
content = KQMLList('MODEL-REMOVE-MECHANISM')
content.set('model-id', '3')
content.set('description', stmts_clj_from_text('NRAS activates BRAF'))
msg = get_request(content)
return msg, content
def _get_expand_model_request(text, model_id):
content = KQMLList('EXPAND-MODEL')
descr = stmts_clj_from_text(text)
content.set('description', descr)
content.set('model-id', model_id)
return get_request(content), content