def test_missing_monomer_condition():
stmts = [Activation(Agent('BRAF'), Agent('KRAS'))]
model = tra_module.assemble_model(stmts)
entity = Agent('HRAS')
quantity = tra.MolecularQuantityReference('total', entity)
condition = tra.MolecularCondition('multiple', quantity, 10)
tra.apply_condition(model, condition)
def test_apply_condition_multiple():
model = _get_gk_model()
lst = KQMLList.from_string('(:type "multiple" :value 2.5 ' +
':quantity (:type "total" ' +
':entity (:description %s)))' % clj_map2k1)
mc = tra_module.get_molecular_condition(lst)
tra.apply_condition(model, mc)
assert model.parameters['MAP2K1_0'].value == 250
def test_apply_condition_decrease():
model = _get_gk_model()
lst = KQMLList.from_string('(:type "decrease" ' +
':quantity (:type "total" ' +
':entity (:description %s)))' % clj_map2k1)
mc = tra_module.get_molecular_condition(lst)
pold = model.parameters['MAP2K1_0'].value
tra.apply_condition(model, mc)
assert model.parameters['MAP2K1_0'].value < pold
def test_apply_condition_exact():
model = _get_gk_model()
lst = KQMLList.from_string(
'(:type "exact" :value (:value 0 :type "number") '
':quantity (:type "total" '
':entity (:description %s)))' % clj_map2k1)
mc = tra_module.get_molecular_condition(lst)
tra.apply_condition(model, mc)
assert model.parameters['MAP2K1_0'].value == 0
mc.value.value = 2000
tra.apply_condition(model, mc)
assert model.parameters['MAP2K1_0'].value == 2000
