Python BiocProcessor Beispiele

Beispiel #1

Datei: read_annotations.py Projekt: BMKEG/exp-parser

import sys
import codecs
from bioc_processor import BiocProcessor

bp = BiocProcessor(sys.argv[1])
outfile = codecs.open(sys.argv[2], "w", "utf-8")

anns = bp.read_annotations("epistSeg")
print >> outfile, "\n".join("%s\t%s" % (label, text) for label, text in anns)

outfile.close()

Beispiel #2

Datei: extract_text.py Projekt: BMKEG/exp-parser

import sys
import codecs
from bioc_processor import BiocProcessor

bp = BiocProcessor(sys.argv[1])
outfile = codecs.open(sys.argv[2], "w", "utf-8")

text = bp.read_text()
print >> outfile, text

outfile.close()

Beispiel #3

Datei: extract_text.py Projekt: BMKEG/exp-parser

import sys
import codecs
from bioc_processor import BiocProcessor

bp = BiocProcessor(sys.argv[1])
outfile = codecs.open(sys.argv[2], "w", "utf-8")

text = bp.read_text()
print >>outfile, text

outfile.close()

Beispiel #4

Datei: read_annotations.py Projekt: BMKEG/exp-parser

import sys
import codecs
from bioc_processor import BiocProcessor

bp = BiocProcessor(sys.argv[1])
outfile = codecs.open(sys.argv[2], "w", "utf-8")

anns = bp.read_annotations("epistSeg")
print >>outfile, "\n".join("%s\t%s"%(label, text) for label, text in anns)

outfile.close()