def biomaj_status(options):
'''
Get bank status information
'''
msg = ''
if options.bank:
bank = Bank(options.bank, options=options, no_log=True)
if bank.bank['properties']['visibility'] != 'public' and not bank.is_owner():
return (False, 'Access forbidden')
info = bank.get_bank_release_info(full=True)
msg += tabulate(info['info'], headers='firstrow', tablefmt='psql') + '\n'
msg += tabulate(info['prod'], headers='firstrow', tablefmt='psql') + '\n'
# do we have some pending release(s)
if 'pend' in info and len(info['pend']) > 1:
msg += tabulate(info['pend'], headers='firstrow', tablefmt='psql') + '\n'
else:
banks = Bank.list()
# Headers of output table
banks_list = [["Name", "Type(s)", "Release", "Visibility", "Last update"]]
for bank in sorted(banks, key=lambda k: k['name']):
bank = Bank(bank['name'], options=options, no_log=True)
if bank.bank['properties']['visibility'] == 'public' or bank.is_owner():
banks_list.append(bank.get_bank_release_info()['info'])
msg += tabulate(banks_list, headers="firstrow", tablefmt="psql") + '\n'
return (True, msg)
def biomaj_daemon_bank_isowner(bank):
'''
Checks that logged user is admin or owner of the bank
'''
(http_code, options, error) = daemon_api_auth(request)
if error:
abort(http_code, error)
bank_log = Bank(bank, options=options, no_log=True)
if bank_log.is_owner():
return jsonify({'is_admin_or_owner': True})
else:
return jsonify({'is_admin_or_owner': False})
def biomaj_bank_log_tail(bank, tail=100):
apikey = request.headers.get('Authorization')
token = None
if apikey:
bearer = apikey.split()
if bearer[0] == 'APIKEY':
token = bearer[1]
log_file = None
try:
user = None
options_object = Options(OPTIONS_PARAMS)
if token:
proxy = Utils.get_service_endpoint(config, 'user')
r = requests.get(proxy + '/api/user/info/apikey/' + token)
if not r.status_code == 200:
abort(404, {'message': 'Invalid API Key or connection issue'})
user = r.json()['user']
options_object = Options({'user': user['id']})
bank_log = Bank(bank, options=options_object, no_log=True)
if bank_log.bank['properties'][
'visibility'] != 'public' and not bank_log.is_owner():
abort(403, {'message': 'not authorized to access this bank'})
if 'status' not in bank_log.bank or 'log_file' not in bank_log.bank[
'status'] or not bank_log.bank['status']['log_file']['status']:
return "No log file available"
log_file = bank_log.bank['status']['log_file']['status']
except Exception as e:
logging.exception(e)
return "Failed to access log file: " + str(e)
if not log_file or not os.path.exists(log_file):
return "Cannot access log file %s" % (str(log_file))
def generate():
with open(log_file) as fp:
tail_l = int(tail)
if tail_l == 0:
for line in fp:
yield line
else:
dq = deque(fp, maxlen=tail_l)
for line in dq:
yield line
yield "##END_OF_LOG"
return Response(generate(), mimetype='text/plain')
def biomaj_status(options, config):
'''
Get bank status information
'''
msg = ''
if options.bank:
bank = Bank(options.bank, options=options, no_log=True)
if bank.bank['properties'][
'visibility'] != 'public' and not bank.is_owner():
return (False, 'Access forbidden')
info = bank.get_bank_release_info(full=True)
if options.json:
bank_info = []
headers = []
if info['info'] and len(info['info']) > 1:
headers = info['info'][0]
bank_info = info['info'][1:]
prod_info = []
prod_headers = []
if info['prod'] and len(info['prod']) > 1:
prod_headers = info['prod'][0]
prod_info = info['prod'][1:]
msg = {
'bank': {
'info': {
'headers': headers,
'details': bank_info
},
'production': {
'headers': prod_headers,
'details': prod_info
},
'pending': []
}
}
else:
msg += tabulate(info['info'], headers='firstrow',
tablefmt='psql') + '\n'
msg += tabulate(info['prod'], headers='firstrow',
tablefmt='psql') + '\n'
# do we have some pending release(s)
if 'pend' in info and len(info['pend']) > 1:
if options.json:
msg['bank']['pending'] = info['pend']
else:
msg += tabulate(
info['pend'], headers='firstrow', tablefmt='psql') + '\n'
else:
banks = Bank.list()
# Headers of output table
banks_list = []
headers = ["Name", "Type(s)", "Release", "Visibility", "Last update"]
if not options.json:
banks_list.append(headers)
for bank in sorted(banks, key=lambda k: k['name']):
try:
bank = Bank(bank['name'], options=options, no_log=True)
if bank.bank['properties'][
'visibility'] == 'public' or bank.is_owner():
banks_list.append(bank.get_bank_release_info()['info'])
except Exception as e:
logging.error('Failed to load bank %s: %s' %
(bank['name'], str(e)))
if options.json:
msg = {'headers': headers, 'banks': banks_list}
else:
msg += tabulate(banks_list, headers="firstrow",
tablefmt="psql") + '\n'
return (True, msg)
