def test_index(self):
BmajIndex.do_index = True
prod = {
"data_dir": "/tmp/test/data",
"formats": {
"fasta": [{
"files": ["fasta/chr1.fa", "fasta/chr2.fa"],
"types": ["nucleic"],
"tags": {
"organism": "hg19"
}
}],
"blast": [{
"files": ["blast/chr1/chr1db"],
"types": ["nucleic"],
"tags": {
"chr": "chr1",
"organism": "hg19"
}
}]
},
"freeze": False,
"session": 1416229253.930908,
"prod_dir": "alu-2003-11-26",
"release": "2003-11-26",
"types": ["nucleic"]
}
BmajIndex.add('test', prod, True)
query = {'query': {'match': {'bank': 'test'}}}
res = BmajIndex.search(query)
self.assertTrue(len(res) == 2)
def test_remove_all(self):
self.test_index()
query = {
'query' : {
'match' : {'bank': 'test'}
}
}
BmajIndex.delete_all_bank('test')
res = BmajIndex.search(query)
self.assertTrue(len(res)==0)
def test_index(self):
BmajIndex.do_index = True
prod = {
"data_dir" : "/tmp/test/data",
"formats" : {
"fasta" : [
{
"files" : [
"fasta/chr1.fa",
"fasta/chr2.fa"
],
"types" : [
"nucleic"
],
"tags" : {
"organism" : "hg19"
}
}
],
"blast": [
{
"files" : [
"blast/chr1/chr1db"
],
"types" : [
"nucleic"
],
"tags" : {
"chr" : "chr1",
"organism" : "hg19"
}
}
]
},
"freeze" : False,
"session" : 1416229253.930908,
"prod_dir" : "alu-2003-11-26",
"release" : "2003-11-26",
"types" : [
"nucleic"
]
}
BmajIndex.add('test',prod, True)
query = {
'query' : {
'match' : {'bank': 'test'}
}
}
res = BmajIndex.search(query)
self.assertTrue(len(res)==2)
def test_remove_all(self):
self.test_index()
query = {'query': {'match': {'bank': 'test'}}}
BmajIndex.delete_all_bank('test')
res = BmajIndex.search(query)
self.assertTrue(len(res) == 0)
