def main():
parser = argparse.ArgumentParser()
parser.add_argument('-s',
'--scan',
dest="directory",
help="Directory to scan")
parser.add_argument('--type', dest="ftype", help="Files type")
parser.add_argument(
'--tags',
dest="tags",
action="append",
default=[],
help="tags, format key:value, can be repeated multiple times")
args = parser.parse_args()
if not os.path.exists(args.directory):
sys.exit(1)
res = {}
for (path, dirs, files) in os.walk(args.directory):
for file in files:
filename = os.path.join(path, file)
(file_format, mime) = Utils.detect_format(filename)
if file_format is not None:
file_format = file_format.replace('application/', '')
filename = filename.replace(args.directory + '/', '')
if file_format is not None:
if file_format not in res:
res[file_format] = [filename]
else:
res[file_format].append(filename)
f_type = ''
if args.ftype:
f_type = args.ftype
tags = ''
if args.tags:
tags = ','.join(args.tags)
for fformat in res.keys():
print '##BIOMAJ#' + fformat + '#' + f_type + '#' + tags + '#' + ','.join(
res[fformat])
def main():
parser = argparse.ArgumentParser()
parser.add_argument("-s", "--scan", dest="directory", help="Directory to scan")
parser.add_argument("--type", dest="ftype", help="Files type")
parser.add_argument(
"--tags",
dest="tags",
action="append",
default=[],
help="tags, format key:value, can be repeated multiple times",
)
args = parser.parse_args()
if not os.path.exists(args.directory):
sys.exit(1)
res = {}
for (path, dirs, files) in os.walk(args.directory):
for file in files:
filename = os.path.join(path, file)
(file_format, mime) = Utils.detect_format(filename)
if file_format is not None:
file_format = file_format.replace("application/", "")
filename = filename.replace(args.directory + "/", "")
if file_format is not None:
if file_format not in res:
res[file_format] = [filename]
else:
res[file_format].append(filename)
f_type = ""
if args.ftype:
f_type = args.ftype
tags = ""
if args.tags:
tags = ",".join(args.tags)
for fformat in res.keys():
print "##BIOMAJ#" + fformat + "#" + f_type + "#" + tags + "#" + ",".join(res[fformat])
def test_mimes(self):
fasta_file = os.path.join(os.path.dirname(os.path.realpath(__file__)),
'bank/test2.fasta')
(mime, encoding) = Utils.detect_format(fasta_file)
self.assertTrue('application/fasta' == mime)
def test_mimes(self):
fasta_file = os.path.join(os.path.dirname(os.path.realpath(__file__)),'bank/test2.fasta')
(mime, encoding) = Utils.detect_format(fasta_file)
self.assertTrue('application/fasta' == mime)
