def run(self):
old_err = sys.stderr
sys.stderr = self.err
self.parser = self.__make_parser()
options, args = self.parser.parse_args(self.argv[1:])
if len(args) <> 2:
self.parser.error("Must specify both ACQ_FILE and MAT_FILE.\n" +
"Try --help for more instructions.")
try:
infile = args[0]
if infile == '-':
infile = StringIO.StringIO(sys.stdin.read())
data = AcqReader.read_file(infile)
except:
sys.stderr.write("Error reading %s\n" % args[0])
sys.exit(1)
try:
MatlabWriter.write_file(data, args[1], compress=options.compress)
except:
sys.stderr.write("Error writing %s\n" % args[1])
sys.exit(1)
sys.stderr = old_err
def run(self):
old_err = sys.stderr
sys.stderr = self.err
self.parser = self.__make_parser()
options, args = self.parser.parse_args(self.argv[1:])
if len(args) != 2:
self.parser.error(
"Must specify both ACQ_FILE and MAT_FILE.\n" +
"Try --help for more instructions.")
try:
infile = args[0]
if infile == '-':
infile = StringIO.StringIO(sys.stdin.read())
data = AcqReader.read_file(infile)
except:
sys.stderr.write("Error reading %s\n" % args[0])
sys.exit(1)
try:
MatlabWriter.write_file(data, args[1], compress=options.compress)
except:
sys.stderr.write("Error writing %s\n" % args[1])
sys.exit(1)
sys.stderr = old_err
#!/usr/bin/env python
# Example taken from the README file.
import bioread
data = bioread.read('myfile.acq')
data.graph_header.file_revision
len(data.channels)
data.channels[1].samples_per_second
len(data.channels[1].data)
len(data.channels[1].upsampled_data)
data.channels[0].samples_per_second
len(data.channels[0].data)
data.channels[0].data[0]
data.channels[0].raw_data[0]
data.channels[0].name
# let's assume the output is "CO2"
data.named_channels['CO2'].data[0]
from bioread.writers import MatlabWriter
MatlabWriter.write_file(data, "myfile.mat")
