def parameters(cls):
parameters = [
ParameterFactory.format(),
ParameterFactory.snpsearch_name(required=True),
ParameterFactory.chromosome_num(required=True),
ParameterFactory.chromosome_start(required=True),
ParameterFactory.chromosome_stop(required=True),
]
return parameters
def process_request(cls, params_dict):
snp_search_name = params_dict[ParameterFactory.snpsearch_name(required=True)]
chromosome_num = params_dict[ParameterFactory.chromosome_num(required=True)]
start_pos = params_dict[ParameterFactory.chromosome_start(required=True)]
stop_pos = params_dict[ParameterFactory.chromosome_stop(required=True)]
data = list()
ncbi_snps = snps_in_interval_multiple(snp_search_name, chromosome_num, start_pos, stop_pos)
for snp in ncbi_snps:
data.append(snp)
columns = ['search_name', 'rs', 'chromosome', 'loc', 'ref', 'alt', 'validated']
return data, columns, None