def create_model(config, data, test_tag):
# Build the main brick and initialize all parameters.
recognizer = SpeechRecognizer(data.recordings_source,
data.labels_source,
data.eos_label,
data.num_features,
data.num_labels,
name="recognizer",
data_prepend_eos=data.prepend_eos,
character_map=data.character_map,
**config["net"])
for brick_path, attribute_dict in sorted(config['initialization'].items(),
key=lambda (k, v): k.count('/')):
for attribute, value in attribute_dict.items():
brick, = Selector(recognizer).select(brick_path).bricks
setattr(brick, attribute, value)
brick.push_initialization_config()
recognizer.initialize()
if test_tag:
tensor.TensorVariable.__str__ = tensor.TensorVariable.__repr__
__stream = data.get_stream("train")
__data = next(__stream.get_epoch_iterator(as_dict=True))
recognizer.recordings.tag.test_value = __data[data.recordings_source]
recognizer.recordings_mask.tag.test_value = __data[
data.recordings_source + '_mask']
recognizer.labels.tag.test_value = __data[data.labels_source]
recognizer.labels_mask.tag.test_value = __data[data.labels_source +
'_mask']
theano.config.compute_test_value = 'warn'
return recognizer
def build_model(images, labels):
vgg = VGG(layer='conv4_4')
vgg.push_initialization_config()
vgg.initialize()
tdb = top_direction_block()
tdb.push_initialization_config()
tdb.initialize()
# Construct feedforward sequence
ss_seq = FeedforwardSequence([vgg.apply, tdb.apply])
ss_seq.push_initialization_config()
ss_seq.initialize()
prediction = ss_seq.apply(images)
cost = StructuredCost().apply(labels, theano.tensor.clip(prediction, 1e-5, 1 - 1e-5))
cg = ComputationGraph(cost)
cg_dropout = apply_dropout(cg, [VariableFilter(roles=[OUTPUT])(cg.variables)[0]], .5)
cost_dropout = cg_dropout.outputs[0]
# define learned parameters
selector = Selector([ss_seq])
W = selector.get_parameters()
parameters = []
parameters += [v for k, v in W.items()]
return cost_dropout, parameters
def build_model(images, labels):
# Construct a bottom convolutional sequence
bottom_conv_sequence = convolutional_sequence((3,3), 16, (160, 160))
bottom_conv_sequence._push_allocation_config()
# Flatten layer
flattener = Flattener()
# Construct a top MLP
conv_out_dim = numpy.prod(bottom_conv_sequence.get_dim('output'))
#top_mlp = MLP([Rectifier(name='non_linear_9'), Softmax(name='non_linear_11')], [conv_out_dim, 1024, 10], weights_init=IsotropicGaussian(), biases_init=Constant(0))
top_mlp = BatchNormalizedMLP([Rectifier(name='non_linear_9'), Softmax(name='non_linear_11')], [conv_out_dim, 1024, 10], weights_init=IsotropicGaussian(), biases_init=Constant(0))
# Construct feedforward sequence
ss_seq = FeedforwardSequence([bottom_conv_sequence.apply, flattener.apply, top_mlp.apply])
ss_seq.push_initialization_config()
ss_seq.initialize()
prediction = ss_seq.apply(images)
cost_noreg = CategoricalCrossEntropy().apply(labels.flatten(), prediction)
# add regularization
selector = Selector([top_mlp])
Ws = selector.get_parameters('W')
mlp_brick_name = 'batchnormalizedmlp'
W0 = Ws['/%s/linear_0.W' % mlp_brick_name]
W1 = Ws['/%s/linear_1.W' % mlp_brick_name]
cost = cost_noreg + .01 * (W0 ** 2).mean() + .01 * (W1 ** 2).mean()
return cost
def create_model(config, data, test_tag):
# Build the main brick and initialize all parameters.
recognizer = SpeechRecognizer(
data.recordings_source, data.labels_source,
data.eos_label,
data.num_features, data.num_labels,
name="recognizer",
data_prepend_eos=data.prepend_eos,
character_map=data.character_map,
**config["net"])
for brick_path, attribute_dict in sorted(
config['initialization'].items(),
key=lambda (k, v): k.count('/')):
for attribute, value in attribute_dict.items():
brick, = Selector(recognizer).select(brick_path).bricks
setattr(brick, attribute, value)
brick.push_initialization_config()
recognizer.initialize()
if test_tag:
tensor.TensorVariable.__str__ = tensor.TensorVariable.__repr__
__stream = data.get_stream("train")
__data = next(__stream.get_epoch_iterator(as_dict=True))
recognizer.recordings.tag.test_value = __data[data.recordings_source]
recognizer.recordings_mask.tag.test_value = __data[data.recordings_source + '_mask']
recognizer.labels.tag.test_value = __data[data.labels_source]
recognizer.labels_mask.tag.test_value = __data[data.labels_source + '_mask']
theano.config.compute_test_value = 'warn'
return recognizer
def get_gradients(self, X, Y, weights=1.0):
W_mean, W_ls, b_mean, b_ls = self.parameters
mean, log_sigma = self.sample_expected(Y)
sigma = tensor.exp(log_sigma)
cost = -log_sigma - 0.5 * (X - mean) ** 2 / tensor.exp(2 * log_sigma)
if weights != 1.0:
cost = -weights.dimshuffle(0, "x") * cost
cost_scaled = sigma ** 2 * cost
cost_gscale = (sigma ** 2).sum(axis=1).dimshuffle([0, "x"])
cost_gscale = cost_gscale * cost
gradients = OrderedDict()
params = Selector(self.mlp).get_parameters()
for pname, param in params.iteritems():
gradients[param] = tensor.grad(cost_gscale.sum(), param, consider_constant=[X, Y])
gradients[W_mean] = tensor.grad(cost_scaled.sum(), W_mean, consider_constant=[X, Y])
gradients[b_mean] = tensor.grad(cost_scaled.sum(), b_mean, consider_constant=[X, Y])
gradients[W_ls] = tensor.grad(cost_scaled.sum(), W_ls, consider_constant=[X, Y])
gradients[b_ls] = tensor.grad(cost_scaled.sum(), b_ls, consider_constant=[X, Y])
return gradients
def unify_parameters(self, source_id, dest_id):
source = self.children[source_id]
source_name = self.children[source_id].name
source_prefix = '/' + source_name + '/'
dest_name = self.children[dest_id].name
dest_prefix = '/' + self.name + '/' + dest_name + '/'
source_params = Selector(source).get_parameters()
replaced = []
self.unified_parameters = []
for param, var in source_params.iteritems():
if not param.startswith(source_prefix):
continue
source_param = '/' + self.name + param
param = param[len(source_prefix):]
for unification in self.parameter_unifications_include:
if unification.match(param):
exclude = False
for ex_unification in self.parameter_unifications_exclude:
if ex_unification.match(param):
exclude = True
break
if exclude:
continue
self.replace_parameter(dest_prefix + param, var)
replaced += [dest_prefix + param]
self.unified_parameters += [source_param]
self.unified_parameters = self.convert_names_to_bricks(
set(self.unified_parameters) | set(replaced))
return replaced
def make_sampling_computation_graph(model_path, num_samples):
f = file(model_path, 'rb')
model = cPickle.load(f)#main_loop = load(model_path)#
f.close()
#model = main_loop.model
selector = Selector(model.top_bricks)
decoder_mlp1, = selector.select('/decoder_network1').bricks
decoder_mlp2, = selector.select('/decoder_network2').bricks
decoder_mlp3, = selector.select('/decoder_network3').bricks
theano_rng = Random().theano_rng
z1 = theano_rng.normal(size=(num_samples, decoder_mlp1.input_dim),
dtype=theano.config.floatX)
z2 = decoder_mlp1.apply(z1)
z2 = z2[:, :40]# + theano.tensor.exp(0.5 * z2[:, 40:]) * theano_rng.normal(size=(num_samples, 40),
# dtype=theano.config.floatX)
z3 = decoder_mlp2.apply(z2)
z3 = z3[:, :100] + theano.tensor.exp(0.5 * z3[:, 100:]) * theano_rng.normal(size=(num_samples, 100),
dtype=theano.config.floatX)
p = decoder_mlp3.apply(z3).reshape((num_samples, 28, 28))
return ComputationGraph([p])
def make_sampling_computation_graph(model_path, num_samples):
f = file(model_path, 'rb')
model = cPickle.load(f)#main_loop = load(model_path)#
f.close()
#model = main_loop.model
selector = Selector(model.top_bricks)
decoder_mlp1, = selector.select('/decoder_network1').bricks
decoder_mlp2, = selector.select('/decoder_network2').bricks
decoder_mlp3, = selector.select('/decoder_network3').bricks
theano_rng = Random().theano_rng
z2 = theano_rng.normal(size=(num_samples, decoder_mlp1.input_dim),
dtype=theano.config.floatX)
h2 = decoder_mlp1.apply(z2)
h2 = h2[:, :50] + theano.tensor.exp(0.5 * h2[:, 50:]) * theano_rng.normal(size=(num_samples, 50),
dtype=theano.config.floatX)
z1 = theano_rng.normal(size=(num_samples, 10),
dtype=theano.config.floatX)
h1 = decoder_mlp2.apply(theano.tensor.concatenate([h2, z1], axis=1))
h1 = h1[:, :50] + theano.tensor.exp(0.5 * h1[:, 50:]) * theano_rng.normal(size=(num_samples, 50),
dtype=theano.config.floatX)
p = decoder_mlp3.apply(theano.tensor.concatenate([h1, h2], axis=1)).reshape((num_samples, 28, 28))
return ComputationGraph([p])
def run(discriminative_regularization=True):
streams = create_celeba_streams(training_batch_size=100,
monitoring_batch_size=500,
include_targets=False)
main_loop_stream, train_monitor_stream, valid_monitor_stream = streams[:3]
# Compute parameter updates for the batch normalization population
# statistics. They are updated following an exponential moving average.
rval = create_training_computation_graphs(discriminative_regularization)
cg, bn_cg, variance_parameters = rval
pop_updates = list(
set(get_batch_normalization_updates(bn_cg, allow_duplicates=True)))
decay_rate = 0.05
extra_updates = [(p, m * decay_rate + p * (1 - decay_rate))
for p, m in pop_updates]
model = Model(bn_cg.outputs[0])
selector = Selector(
find_bricks(
model.top_bricks,
lambda brick: brick.name in ('encoder_convnet', 'encoder_mlp',
'decoder_convnet', 'decoder_mlp')))
parameters = list(selector.get_parameters().values()) + variance_parameters
# Prepare algorithm
step_rule = Adam()
algorithm = GradientDescent(cost=bn_cg.outputs[0],
parameters=parameters,
step_rule=step_rule)
algorithm.add_updates(extra_updates)
# Prepare monitoring
monitored_quantities_list = []
for graph in [bn_cg, cg]:
cost, kl_term, reconstruction_term = graph.outputs
cost.name = 'nll_upper_bound'
avg_kl_term = kl_term.mean(axis=0)
avg_kl_term.name = 'avg_kl_term'
avg_reconstruction_term = -reconstruction_term.mean(axis=0)
avg_reconstruction_term.name = 'avg_reconstruction_term'
monitored_quantities_list.append(
[cost, avg_kl_term, avg_reconstruction_term])
train_monitoring = DataStreamMonitoring(
monitored_quantities_list[0], train_monitor_stream, prefix="train",
updates=extra_updates, after_epoch=False, before_first_epoch=False,
every_n_epochs=5)
valid_monitoring = DataStreamMonitoring(
monitored_quantities_list[1], valid_monitor_stream, prefix="valid",
after_epoch=False, before_first_epoch=False, every_n_epochs=5)
# Prepare checkpoint
save_path = 'celeba_vae_{}regularization.zip'.format(
'' if discriminative_regularization else 'no_')
checkpoint = Checkpoint(save_path, every_n_epochs=5, use_cpickle=True)
extensions = [Timing(), FinishAfter(after_n_epochs=75), train_monitoring,
valid_monitoring, checkpoint, Printing(), ProgressBar()]
main_loop = MainLoop(data_stream=main_loop_stream,
algorithm=algorithm, extensions=extensions)
main_loop.run()
def get_gradients(self, features, n_samples):
"""Perform inference and calculate gradients.
Returns
-------
log_px : T.fvector
log_psx : T.fvector
gradients : OrderedDict
"""
p_layers = self.p_layers
q_layers = self.q_layers
n_layers = len(p_layers)
batch_size = features.shape[0]
x = replicate_batch(features, n_samples)
# Get Q-samples
samples, log_p, log_q = self.sample_q(x)
# Reshape and sum
samples = unflatten_values(samples, batch_size, n_samples)
log_p = unflatten_values(log_p, batch_size, n_samples)
log_q = unflatten_values(log_q, batch_size, n_samples)
log_p_all = sum(log_p)
log_q_all = sum(log_q)
# Approximate log(p(x))
log_px = logsumexp(log_p_all - log_q_all, axis=-1) - tensor.log(n_samples)
log_psx = (logsumexp((log_p_all - log_q_all) / 2, axis=-1) - tensor.log(n_samples)) * 2.
# Approximate log p(x) and calculate IS weights
w = self.importance_weights(log_p, log_q)
wp = w.reshape((batch_size * n_samples, ))
wq = w.reshape((batch_size * n_samples, ))
wq = wq - (1. / n_samples)
samples = flatten_values(samples, batch_size * n_samples)
gradients = OrderedDict()
for l in xrange(n_layers - 1):
gradients = merge_gradients(gradients, p_layers[l].get_gradients(samples[l], samples[l + 1], weights=wp))
gradients = merge_gradients(gradients, q_layers[l].get_gradients(samples[l + 1], samples[l], weights=wq))
gradients = merge_gradients(gradients, p_layers[-1].get_gradients(samples[-1], weights=wp))
if (self.l1reg > 0.) or (self.l2reg > 0.):
reg_gradients = OrderedDict()
params = Selector(self).get_parameters()
for pname, param in params.iteritems():
if has_roles(param, (WEIGHT,)):
reg_cost = self.l1reg * tensor.sum(abs(param)) + self.l2reg * tensor.sum(param ** 2)
reg_gradients[param] = tensor.grad(reg_cost, param)
gradients = merge_gradients(gradients, reg_gradients)
return log_px, log_psx, gradients
def get_gradients(self, features, n_samples):
log_p_bound = self.log_likelihood_bound(features, n_samples)
gradients = OrderedDict()
params = Selector(self).get_parameters()
for pname, param in params.iteritems():
cost = -log_p_bound.mean() + self.l2reg * tensor.sum(param ** 2)
gradients[param] = tensor.grad(cost, param)
return log_p_bound, gradients
def test_selector():
b1 = MockBrickBottom(name="b1")
b2 = MockBrickBottom(name="b2")
b3 = MockBrickBottom(name="b3")
t1 = MockBrickTop([b1, b2], name="t1")
t2 = MockBrickTop([b2, b3], name="t2")
s1 = Selector([t1])
s11 = s1.select("/t1/b1")
assert s11.bricks[0] == b1
assert len(s11.bricks) == 1
s12 = s1.select("/t1")
assert s12.bricks[0] == t1
assert len(s12.bricks) == 1
s2 = Selector([t1, t2])
s21 = s2.select("/t2/b2")
assert s21.bricks[0] == b2
assert len(s21.bricks) == 1
assert s2.select("/t2/b2.V")[0] == b2.parameters[0]
parameters = list(s1.get_parameters().items())
assert parameters[0][0] == "/t1/b1.V"
assert parameters[0][1] == b1.parameters[0]
assert parameters[1][0] == "/t1/b1.W"
assert parameters[1][1] == b1.parameters[1]
assert parameters[2][0] == "/t1/b2.V"
assert parameters[2][1] == b2.parameters[0]
assert parameters[3][0] == "/t1/b2.W"
assert parameters[3][1] == b2.parameters[1]
def create_recognizer(config, net_config, langs, info_dataset,
postfix_manager, load_path=None, mask_path=None):
if 'dependency' in net_config:
net_config.pop('dependency')
unification_include = []
unification_exclude = []
if 'unification_rules' in net_config:
ur = net_config.pop('unification_rules')
unification_include = ur.get('include', [])
unification_exclude = ur.get('exclude', [])
recognizer = MultilangDependencyRecognizer(langs, info_dataset, postfix_manager, unification_include, unification_exclude, **net_config)
if recognizer.children[0].soft_pointer:
global data_params_valid
global data_params_train
data_params_valid = {'soften_distributions': {'pointers': (0.0, None)}}
data_params_train = {'soften_distributions':
{'pointers':
(recognizer.children[0].soft_pointer_val,
None)}}
if load_path:
recognizer.load_params(load_path)
unifications = []
for dest_id in xrange(1, len(recognizer.children)):
unifications += recognizer.unify_parameters(0, dest_id)
logger.info("Unified parameters: \n"+
pprint.pformat(unifications))
else:
for brick_path, attribute_dict in sorted(
config['initialization'].items(),
key=lambda (k, v): k.count('/')):
for attribute, value in attribute_dict.items():
brick, = Selector(recognizer).select(brick_path).bricks
setattr(brick, attribute, value)
brick.push_initialization_config()
recognizer.initialize()
unifications = []
for dest_id in xrange(1, len(recognizer.children)):
unifications += recognizer.unify_parameters(0, dest_id)
logger.info("Unified parameters: \n"+
pprint.pformat(unifications))
if mask_path:
with open(mask_path, 'r') as f:
mask_dict = pickle.load(f)
recognizer.activate_masks(mask_dict)
return recognizer
def get_decoder_function(model):
selector = Selector(model.top_bricks)
decoder_mlp, = selector.select("/decoder_mlp").bricks
decoder_convnet, = selector.select("/decoder_convnet").bricks
print("Building computation graph...")
z = tensor.matrix()
mu_theta = decoder_convnet.apply(decoder_mlp.apply(z).reshape((-1,) + decoder_convnet.get_dim("input_")))
computation_graph = ComputationGraph([z, mu_theta])
print("Compiling sampling function...")
decoder_function = theano.function(computation_graph.inputs, computation_graph.outputs)
return decoder_function
def get_gradients(self, X, Y, weights=1.0):
cost = -(weights * self.log_prob(X, Y)).sum()
params = Selector(self).get_parameters()
gradients = OrderedDict()
if isinstance(weights, float):
for pname, param in params.iteritems():
gradients[param] = tensor.grad(cost, param, consider_constant=[X, Y])
else:
for pname, param in params.iteritems():
gradients[param] = tensor.grad(cost, param, consider_constant=[X, Y, weights])
return gradients
def make_sampling_computation_graph(model_path, num_samples):
f = file(model_path, 'rb')
model = cPickle.load(f)#main_loop = load(model_path)#
f.close()
#model = main_loop.model
selector = Selector(model.top_bricks)
decoder_mlp, = selector.select('/decoder_network').bricks
theano_rng = Random().theano_rng
z = theano_rng.normal(size=(num_samples, decoder_mlp.input_dim),
dtype=theano.config.floatX)
p = decoder_mlp.apply(z).reshape((num_samples, 28, 28))
return ComputationGraph([p])
def __init__(self, outputs):
super(Model, self).__init__(outputs)
if len(self.outputs) > 1:
logger.warning("model with multiple output " + multiple_message)
bricks = [
get_brick(var) for var in self.variables + self.scan_variables
if get_brick(var)
]
children = set(chain(*(brick.children for brick in bricks)))
# Quadratic complexity: we should not have thousands of
# top-level bricks.
self.top_bricks = []
for brick in bricks:
if brick not in children and brick not in self.top_bricks:
self.top_bricks.append(brick)
names = Counter([brick.name for brick in self.top_bricks])
repeated_names = [name for name, count in names.items() if count > 1]
if repeated_names:
raise ValueError("top bricks with the same name:"
" {}".format(', '.join(repeated_names)))
brick_parameter_names = {
v: k
for k, v in Selector(self.top_bricks).get_parameters().items()
}
parameter_list = []
for parameter in self.parameters:
if parameter in brick_parameter_names:
parameter_list.append(
(brick_parameter_names[parameter], parameter))
else:
parameter_list.append((parameter.name, parameter))
self._parameter_dict = OrderedDict(parameter_list)
def __init__(self, outputs):
super(Model, self).__init__(outputs)
if len(self.outputs) > 1:
logger.warning("model with multiple output " + multiple_message)
bricks = [
get_brick(var) for var in self.variables + self.scan_variables
if get_brick(var)
]
children = set(chain(*(brick.children for brick in bricks)))
# Quadratic complexity: we should not have thousands of
# top-level bricks.
self.top_bricks = []
for brick in bricks:
if brick not in children and brick not in self.top_bricks:
self.top_bricks.append(brick)
if len(set(b.name for b in self.top_bricks)) < len(self.top_bricks):
raise ValueError("top bricks with the same name")
brick_param_names = {
v: k
for k, v in Selector(self.top_bricks).get_params().items()
}
self.params = []
for param in VariableFilter(roles=[PARAMETER])(self.shared_variables):
if param in brick_param_names:
self.params.append((brick_param_names[param], param))
else:
self.params.append((param.name, param))
self.params = OrderedDict(self.params)
def create_running_graphs(classifier):
try:
classifier_model = Model(load(classifier).algorithm.cost)
except AttributeError:
# newer version of blocks
with open(classifier, 'rb') as src:
classifier_model = Model(load(src).algorithm.cost)
selector = Selector(classifier_model.top_bricks)
convnet, = selector.select('/convnet').bricks
mlp, = selector.select('/mlp').bricks
x = tensor.tensor4('features')
y_hat = mlp.apply(convnet.apply(x).flatten(ndim=2))
cg = ComputationGraph([y_hat])
return cg
def create_running_graphs(classifier):
try:
classifier_model = Model(load(classifier).algorithm.cost)
except AttributeError:
# newer version of blocks
with open(classifier, 'rb') as src:
classifier_model = Model(load(src).algorithm.cost)
selector = Selector(classifier_model.top_bricks)
convnet, = selector.select('/convnet').bricks
mlp, = selector.select('/mlp').bricks
x = tensor.tensor4('features')
y_hat = mlp.apply(convnet.apply(x).flatten(ndim=2))
cg = ComputationGraph([y_hat])
return cg
def sample_at(self, z):
selector = Selector(self.model.top_bricks)
decoder_mlp, = selector.select("/decoder_mlp").bricks
decoder_convnet, = selector.select("/decoder_convnet").bricks
print("Building computation graph...")
sz = shared_floatx(z)
mu_theta = decoder_convnet.apply(decoder_mlp.apply(sz).reshape((-1,) + decoder_convnet.get_dim("input_")))
computation_graph = ComputationGraph([mu_theta])
print("Compiling sampling function...")
sampling_function = theano.function(computation_graph.inputs, computation_graph.outputs[0])
print("Sampling...")
samples = sampling_function()
return samples
def test_selector_get_parameters_uniqueness():
top = MockBrickTop(
[MockBrickBottom(name="bottom"),
MockBrickBottom(name="bottom")],
name="top")
selector = Selector([top])
assert_raises(ValueError, selector.get_parameters)
def get_decoder_function(model):
selector = Selector(model.top_bricks)
decoder_mlp, = selector.select('/decoder_mlp').bricks
decoder_convnet, = selector.select('/decoder_convnet').bricks
print('Building computation graph...')
z = tensor.matrix()
mu_theta = decoder_convnet.apply(
decoder_mlp.apply(z).reshape((-1, ) +
decoder_convnet.get_dim('input_')))
computation_graph = ComputationGraph([z, mu_theta])
print('Compiling sampling function...')
decoder_function = theano.function(computation_graph.inputs,
computation_graph.outputs)
return decoder_function
def get_gradients(self, X, Y, weights=1.):
cost = -(weights * self.log_prob(X, Y)).sum()
params = Selector(self).get_parameters()
gradients = OrderedDict()
if isinstance(weights, float):
for pname, param in params.iteritems():
gradients[param] = tensor.grad(cost,
param,
consider_constant=[X, Y])
else:
for pname, param in params.iteritems():
gradients[param] = tensor.grad(
cost, param, consider_constant=[X, Y, weights])
return gradients
def test_selector():
b1 = MockBrickBottom(name="b1")
b2 = MockBrickBottom(name="b2")
b3 = MockBrickBottom(name="b3")
t1 = MockBrickTop([b1, b2], name="t1")
t2 = MockBrickTop([b2, b3], name="t2")
s1 = Selector([t1])
s11 = s1.select("/t1/b1")
assert s11.bricks[0] == b1
assert len(s11.bricks) == 1
s12 = s1.select("/t1")
assert s12.bricks[0] == t1
assert len(s12.bricks) == 1
s2 = Selector([t1, t2])
s21 = s2.select("/t2/b2")
assert s21.bricks[0] == b2
assert len(s21.bricks) == 1
assert s2.select("/t2/b2.V")[0] == b2.parameters[0]
parameters = list(s1.get_parameters().items())
assert parameters[0][0] == "/t1/b1.V"
assert parameters[0][1] == b1.parameters[0]
assert parameters[1][0] == "/t1/b1.W"
assert parameters[1][1] == b1.parameters[1]
assert parameters[2][0] == "/t1/b2.V"
assert parameters[2][1] == b2.parameters[0]
assert parameters[3][0] == "/t1/b2.W"
assert parameters[3][1] == b2.parameters[1]
def print_parameteters(models):
param_dict = merge(*[Selector(model).get_parameters() for model in models])
number_of_parameters = 0
logger.info("Parameter names: ")
for name, value in param_dict.items():
number_of_parameters += np.product(value.get_value().shape)
logger.info(' {:15}: {}'.format(value.get_value().shape, name))
logger.info("Total number of parameters: {}".format(number_of_parameters))
def get_image_encoder_function(model):
selector = Selector(model.top_bricks)
encoder_convnet, = selector.select("/encoder_convnet").bricks
encoder_mlp, = selector.select("/encoder_mlp").bricks
print("Building computation graph...")
x = tensor.tensor4("features")
phi = encoder_mlp.apply(encoder_convnet.apply(x).flatten(ndim=2))
nlat = encoder_mlp.output_dim // 2
mu_phi = phi[:, :nlat]
log_sigma_phi = phi[:, nlat:]
epsilon = Random().theano_rng.normal(size=mu_phi.shape, dtype=mu_phi.dtype)
z = mu_phi + epsilon * tensor.exp(log_sigma_phi)
computation_graph = ComputationGraph([x, z])
print("Compiling reconstruction function...")
encoder_function = theano.function(computation_graph.inputs, computation_graph.outputs)
return encoder_function
def get_image_encoder_function(model):
selector = Selector(model.top_bricks)
encoder_convnet, = selector.select('/encoder_convnet').bricks
encoder_mlp, = selector.select('/encoder_mlp').bricks
print('Building computation graph...')
x = tensor.tensor4('features')
phi = encoder_mlp.apply(encoder_convnet.apply(x).flatten(ndim=2))
nlat = encoder_mlp.output_dim // 2
mu_phi = phi[:, :nlat]
log_sigma_phi = phi[:, nlat:]
epsilon = Random().theano_rng.normal(size=mu_phi.shape, dtype=mu_phi.dtype)
z = mu_phi + epsilon * tensor.exp(log_sigma_phi)
computation_graph = ComputationGraph([x, z])
print('Compiling reconstruction function...')
encoder_function = theano.function(
computation_graph.inputs, computation_graph.outputs)
return encoder_function
def sample_at(self, z):
selector = Selector(self.model.top_bricks)
decoder_mlp, = selector.select('/decoder_mlp').bricks
decoder_convnet, = selector.select('/decoder_convnet').bricks
print('Building computation graph...')
sz = shared_floatx(z)
mu_theta = decoder_convnet.apply(
decoder_mlp.apply(sz).reshape(
(-1,) + decoder_convnet.get_dim('input_')))
computation_graph = ComputationGraph([mu_theta])
print('Compiling sampling function...')
sampling_function = theano.function(
computation_graph.inputs, computation_graph.outputs[0])
print('Sampling...')
samples = sampling_function()
return samples
def __init__(self, bricks, cost):
if not isinstance(bricks, Selector):
bricks = Selector(bricks)
if isinstance(cost, Variable):
cost = ComputationGraph(cost)
self.bricks = bricks
self.cost = cost
self.properties = []
self.updates = []
def extract_parameter_values(bricks):
"""Extract parameter values from a bricks hierarchy.
Parameters
----------
bricks : (list of) :class:`.Brick`, or :class:`.Selector`
The top bricks.
Returns
-------
A dictionary of (parameter name, numpy array) pairs.
"""
if isinstance(bricks, Brick):
bricks = Selector([bricks])
if not isinstance(bricks, Selector):
bricks = Selector(bricks)
return OrderedDict([(name, variable.get_value(borrow=True))
for name, variable in bricks.get_params().items()])
def preprocess_svhn(main_loop, save_path):
h5file = h5py.File(save_path, mode='w')
ali, = Selector(main_loop.model.top_bricks).select('/ali').bricks
x = tensor.tensor4('features')
y = tensor.imatrix('targets')
params = ali.encoder.apply(x)
mu = params[:, :ali.encoder._nlat]
acts = []
acts += [mu]
acts += VariableFilter(bricks=[
ali.encoder.layers[-9], ali.encoder.layers[-6], ali.encoder.layers[-3]
],
roles=[OUTPUT])(ComputationGraph([mu]).variables)
output = tensor.concatenate([act.flatten(ndim=2) for act in acts], axis=1)
preprocess = theano.function([x, y], [output.flatten(ndim=2), y])
train_set = SVHN(2,
which_sets=('train', ),
sources=('features', 'targets'))
train_stream = DataStream.default_stream(train_set,
iteration_scheme=SequentialScheme(
train_set.num_examples, 100))
train_features, train_targets = map(
numpy.vstack,
list(
zip(*[
preprocess(*batch)
for batch in train_stream.get_epoch_iterator()
])))
test_set = SVHN(2, which_sets=('test', ), sources=('features', 'targets'))
test_stream = DataStream.default_stream(test_set,
iteration_scheme=SequentialScheme(
test_set.num_examples, 100))
test_features, test_targets = map(
numpy.vstack,
list(
zip(*[
preprocess(*batch)
for batch in test_stream.get_epoch_iterator()
])))
data = (('train', 'features', train_features), ('test', 'features',
test_features),
('train', 'targets', train_targets), ('test', 'targets',
test_targets))
fill_hdf5_file(h5file, data)
for i, label in enumerate(('batch', 'feature')):
h5file['features'].dims[i].label = label
for i, label in enumerate(('batch', 'index')):
h5file['targets'].dims[i].label = label
h5file.flush()
h5file.close()
def __init__(self, langs, info_data, postfix_manager,
parameter_unifications_include,
parameter_unifications_exclude, **net_config):
super(MultilangDependencyRecognizer, self).__init__(name='recognizer')
self.langs = langs
self.info_data = info_data
self.postfix_manager = postfix_manager
self.parameter_unifications_include = [
re.compile(unification)
for unification in parameter_unifications_include
]
self.parameter_unifications_exclude = [
re.compile(unification)
for unification in parameter_unifications_exclude
]
self.init_recognizers(**net_config)
self.selector = Selector(self)
self.child_postfix_regexp = [
re.compile('.*' + chld.names_postfix + '($|_.*)')
for chld in self.children
]
def inject_parameter_values(bricks, param_values):
"""Inject parameter values into a bricks hierarchy.
Parameters
----------
bricks : :class:`.Brick` or :class:`.Selector or list of :class:`Brick`
The top bricks.
param_values : dict of (parameter name, :class:`~numpy.ndarray`) pairs
The parameter values.
"""
if isinstance(bricks, Brick):
bricks = Selector([bricks])
if not isinstance(bricks, Selector):
bricks = Selector(bricks)
for name, value in param_values.items():
selected = bricks.select(name)
if len(selected) == 0:
logger.error("Unknown parameter {}".format(name))
if not len(selected) == 1:
raise ValueError
selected = selected[0]
assert selected.get_value(
borrow=True, return_internal_type=True).shape == value.shape
selected.set_value(value)
params = bricks.get_params()
for name in params.keys():
if name not in param_values:
logger.error(
"No value is provided for the parameter {}".format(name))
def make_sampling_computation_graph(model_path, num_samples):
f = file(model_path, 'rb')
model = cPickle.load(f)#main_loop = load(model_path)#
f.close()
#model = main_loop.model
selector = Selector(model.top_bricks)
decoder_mlp2, = selector.select('/decoder_network2').bricks
decoder_mlp1, = selector.select('/decoder_network1').bricks
upsample_mlp2, = selector.select('/upsample_network2').bricks
upsample_mlp1, = selector.select('/upsample_network1').bricks
theano_rng = Random().theano_rng
z2 = theano_rng.normal(size=(num_samples, decoder_mlp2.input_dim),
dtype=theano.config.floatX)
h2_params = decoder_mlp2.apply(z2)
length = int(h2_params.eval().shape[1]/2)
h2_mu = h2_params[:, :length]
h2_lognu = h2_params[:, length:]
h2 = h2_mu + theano.tensor.exp(0.5 * h2_lognu) * theano_rng.normal(size=h2_mu.shape,
dtype=h2_mu.dtype)
z1 = theano_rng.normal(size=(num_samples, decoder_mlp1.input_dim),
dtype=theano.config.floatX)
h1_tilde_params = decoder_mlp1.apply(z1)
length = int(h1_tilde_params.eval().shape[1]/2)
h1_tilde_mu = h1_tilde_params[:, :length]
h1_tilde_lognu = h1_tilde_params[:, length:]
h1_tilde = h1_tilde_mu + theano.tensor.exp(0.5 * h1_tilde_lognu) * theano_rng.normal(size=h1_tilde_mu.shape,
dtype=h1_tilde_mu.dtype)
import pdb; pdb.set_trace()
h1 = upsample_mlp1.apply(h2) + h1_tilde
p = upsample_mlp2.apply(h1).reshape((num_samples, 28, 28))
return ComputationGraph([p])
def def_reading_parameters(self):
parameters = Selector(self._def_reader).get_parameters().values()
parameters.extend(Selector(self._combiner).get_parameters().values())
if self._reuse_word_embeddings:
lookup_parameters = Selector(
self._lookup).get_parameters().values()
parameters = [p for p in parameters if p not in lookup_parameters]
return parameters
def load_params(bricks, path):
"""Load brick parameters.
Loads parameters from .npz file where they are saved with their pathes.
Parameters
----------
bricks : Brick or Selector
The bricks.
path : str or file
Source for loading.
"""
if isinstance(bricks, Brick):
bricks = Selector([bricks])
assert isinstance(bricks, Selector)
param_values = {
name.replace("-", "/"): value
for name, value in numpy.load(path).items()
}
for name, value in param_values.items():
selected = bricks.select(name)
if len(selected) == 0:
logger.error("Unknown parameter {}".format(name))
assert len(selected) == 1
selected = selected[0]
assert selected.get_value(
borrow=True, return_internal_type=True).shape == value.shape
selected.set_value(value)
params = bricks.get_params()
for name in params.keys():
if name not in param_values:
logger.error(
"No value is provided for the parameter {}".format(name))
def get_gradients(self, X, Y, weights=1.):
W_mean, W_ls, b_mean, b_ls = self.parameters
mean, log_sigma = self.sample_expected(Y)
sigma = tensor.exp(log_sigma)
cost = -log_sigma - 0.5 * (X - mean)**2 / tensor.exp(2 * log_sigma)
if weights != 1.:
cost = -weights.dimshuffle(0, 'x') * cost
cost_scaled = sigma**2 * cost
cost_gscale = (sigma**2).sum(axis=1).dimshuffle([0, 'x'])
cost_gscale = cost_gscale * cost
gradients = OrderedDict()
params = Selector(self.mlp).get_parameters()
for pname, param in params.iteritems():
gradients[param] = tensor.grad(cost_gscale.sum(),
param,
consider_constant=[X, Y])
gradients[W_mean] = tensor.grad(cost_scaled.sum(),
W_mean,
consider_constant=[X, Y])
gradients[b_mean] = tensor.grad(cost_scaled.sum(),
b_mean,
consider_constant=[X, Y])
gradients[W_ls] = tensor.grad(cost_scaled.sum(),
W_ls,
consider_constant=[X, Y])
gradients[b_ls] = tensor.grad(cost_scaled.sum(),
b_ls,
consider_constant=[X, Y])
return gradients
def test_selector():
class MockBrickTop(Brick):
def __init__(self, children, **kwargs):
super(MockBrickTop, self).__init__(**kwargs)
self.children = children
self.params = []
class MockBrickBottom(Brick):
def __init__(self, **kwargs):
super(MockBrickBottom, self).__init__(**kwargs)
self.params = [theano.shared(0, "V"), theano.shared(0, "W")]
b1 = MockBrickBottom(name="b1")
b2 = MockBrickBottom(name="b2")
b3 = MockBrickBottom(name="b3")
t1 = MockBrickTop([b1, b2], name="t1")
t2 = MockBrickTop([b2, b3], name="t2")
s1 = Selector([t1])
s11 = s1.select("/t1/b1")
assert s11.bricks[0] == b1
assert len(s11.bricks) == 1
s12 = s1.select("/t1")
assert s12.bricks[0] == t1
assert len(s12.bricks) == 1
s2 = Selector([t1, t2])
s21 = s2.select("/t2/b2")
assert s21.bricks[0] == b2
assert len(s21.bricks) == 1
assert s2.select("/t2/b2.V")[0] == b2.params[0]
params = list(s1.get_params().items())
assert params[0][0] == "/t1/b1.V"
assert params[0][1] == b1.params[0]
assert params[1][0] == "/t1/b1.W"
assert params[1][1] == b1.params[1]
assert params[2][0] == "/t1/b2.V"
assert params[2][1] == b2.params[0]
assert params[3][0] == "/t1/b2.W"
assert params[3][1] == b2.params[1]
def save_params(bricks, path):
"""Save bricks parameters.
Saves parameters with their pathes into an .npz file.
Parameters
----------
bricks : Brick or Selector
The bricks.
path : str of file
Destination for saving.
"""
if isinstance(bricks, Brick):
bricks = Selector([bricks])
assert isinstance(bricks, Selector)
params = bricks.get_params()
# numpy.savez is vulnerable to slashes in names
param_values = {
name.replace("/", "-"): param.get_value()
for name, param in params.items()
}
numpy.savez(path, **param_values)
def test_selector():
class MockBrickTop(Brick):
def __init__(self, children, **kwargs):
super(MockBrickTop, self).__init__(**kwargs)
self.children = children
self.params = []
class MockBrickBottom(Brick):
def __init__(self, **kwargs):
super(MockBrickBottom, self).__init__(**kwargs)
self.params = [theano.shared(0, "V"), theano.shared(0, "W")]
b1 = MockBrickBottom(name="b1")
b2 = MockBrickBottom(name="b2")
b3 = MockBrickBottom(name="b3")
t1 = MockBrickTop([b1, b2], name="t1")
t2 = MockBrickTop([b2, b3], name="t2")
s1 = Selector([t1])
s11 = s1.select("/t1/b1")
assert s11.bricks[0] == b1
assert len(s11.bricks) == 1
s12 = s1.select("/t1")
assert s12.bricks[0] == t1
assert len(s12.bricks) == 1
s2 = Selector([t1, t2])
s21 = s2.select("/t2/b2")
assert s21.bricks[0] == b2
assert len(s21.bricks) == 1
assert s2.select("/t2/b2.V")[0] == b2.params[0]
params = list(s1.get_params().items())
assert params[0][0] == "/t1/b1.V"
assert params[0][1] == b1.params[0]
assert params[1][0] == "/t1/b1.W"
assert params[1][1] == b1.params[1]
assert params[2][0] == "/t1/b2.V"
assert params[2][1] == b2.params[0]
assert params[3][0] == "/t1/b2.W"
assert params[3][1] == b2.params[1]
def main(config,
tr_stream,
dev_stream,
source_vocab,
target_vocab,
use_bokeh=False):
# Create Theano variables
logger.info('Creating theano variables')
source_sentence = tensor.lmatrix('source')
source_sentence_mask = tensor.matrix('source_mask')
target_sentence = tensor.lmatrix('target')
target_sentence_mask = tensor.matrix('target_mask')
initial_context = tensor.matrix('initial_context')
# Construct model
logger.info('Building RNN encoder-decoder')
encoder = BidirectionalEncoder(config['src_vocab_size'],
config['enc_embed'], config['enc_nhids'])
# let user specify the target transition class name in config,
# eval it and pass to decoder
target_transition_name = config.get(
'target_transition', 'GRUInitialStateWithInitialStateSumContext')
target_transition = eval(target_transition_name)
logger.info('Using target transition: {}'.format(target_transition_name))
decoder = InitialContextDecoder(config['trg_vocab_size'],
config['dec_embed'], config['dec_nhids'],
config['enc_nhids'] * 2,
config['context_dim'], target_transition)
cost = decoder.cost(encoder.apply(source_sentence, source_sentence_mask),
source_sentence_mask, target_sentence,
target_sentence_mask, initial_context)
cost.name = 'decoder_cost'
# Initialize model
logger.info('Initializing model')
encoder.weights_init = decoder.weights_init = IsotropicGaussian(
config['weight_scale'])
encoder.biases_init = decoder.biases_init = Constant(0)
encoder.push_initialization_config()
decoder.push_initialization_config()
encoder.bidir.prototype.weights_init = Orthogonal()
decoder.transition.weights_init = Orthogonal()
encoder.initialize()
decoder.initialize()
logger.info('Creating computational graph')
cg = ComputationGraph(cost)
# GRAPH TRANSFORMATIONS FOR BETTER TRAINING
# TODO: validate performance with/without regularization
if config.get('l2_regularization', False) is True:
l2_reg_alpha = config['l2_regularization_alpha']
logger.info(
'Applying l2 regularization with alpha={}'.format(l2_reg_alpha))
model_weights = VariableFilter(roles=[WEIGHT])(cg.variables)
for W in model_weights:
cost = cost + (l2_reg_alpha * (W**2).sum())
# why do we need to name the cost variable? Where did the original name come from?
cost.name = 'decoder_cost_cost'
cg = ComputationGraph(cost)
# apply dropout for regularization
if config['dropout'] < 1.0:
# dropout is applied to the output of maxout in ghog
# this is the probability of dropping out, so you probably want to make it <=0.5
logger.info('Applying dropout')
dropout_inputs = [
x for x in cg.intermediary_variables
if x.name == 'maxout_apply_output'
]
cg = apply_dropout(cg, dropout_inputs, config['dropout'])
# Print shapes
shapes = [param.get_value().shape for param in cg.parameters]
logger.info("Parameter shapes: ")
for shape, count in Counter(shapes).most_common():
logger.info(' {:15}: {}'.format(shape, count))
logger.info("Total number of parameters: {}".format(len(shapes)))
# Print parameter names
enc_dec_param_dict = merge(
Selector(encoder).get_parameters(),
Selector(decoder).get_parameters())
logger.info("Parameter names: ")
for name, value in enc_dec_param_dict.items():
logger.info(' {:15}: {}'.format(value.get_value().shape, name))
logger.info("Total number of parameters: {}".format(
len(enc_dec_param_dict)))
# Set up training model
logger.info("Building model")
training_model = Model(cost)
# create the training directory, and copy this config there if directory doesn't exist
if not os.path.isdir(config['saveto']):
os.makedirs(config['saveto'])
shutil.copy(config['config_file'], config['saveto'])
# Set extensions
# TODO: add checking for existing model and loading
logger.info("Initializing extensions")
extensions = [
FinishAfter(after_n_batches=config['finish_after']),
TrainingDataMonitoring([cost], after_batch=True),
Printing(after_batch=True),
CheckpointNMT(config['saveto'], every_n_batches=config['save_freq'])
]
# Create the theano variables that we need for the sampling graph
sampling_input = tensor.lmatrix('input')
sampling_context = tensor.matrix('context_input')
# Set up beam search and sampling computation graphs if necessary
if config['hook_samples'] >= 1 or config.get('bleu_script',
None) is not None:
logger.info("Building sampling model")
sampling_representation = encoder.apply(
sampling_input, tensor.ones(sampling_input.shape))
generated = decoder.generate(sampling_input, sampling_representation,
sampling_context)
search_model = Model(generated)
_, samples = VariableFilter(
bricks=[decoder.sequence_generator], name="outputs")(
ComputationGraph(generated[1])) # generated[1] is next_outputs
# Add sampling
if config['hook_samples'] >= 1:
logger.info("Building sampler")
extensions.append(
Sampler(
model=search_model,
data_stream=tr_stream,
hook_samples=config['hook_samples'],
every_n_batches=config['sampling_freq'],
src_vocab=source_vocab,
trg_vocab=target_vocab,
src_vocab_size=config['src_vocab_size'],
))
# Add early stopping based on bleu
if config.get('bleu_script', None) is not None:
logger.info("Building bleu validator")
extensions.append(
BleuValidator(sampling_input,
sampling_context,
samples=samples,
config=config,
model=search_model,
data_stream=dev_stream,
src_vocab=source_vocab,
trg_vocab=target_vocab,
normalize=config['normalized_bleu'],
every_n_batches=config['bleu_val_freq']))
# Add early stopping based on Meteor
if config.get('meteor_directory', None) is not None:
logger.info("Building meteor validator")
extensions.append(
MeteorValidator(sampling_input,
sampling_context,
samples=samples,
config=config,
model=search_model,
data_stream=dev_stream,
src_vocab=source_vocab,
trg_vocab=target_vocab,
normalize=config['normalized_bleu'],
every_n_batches=config['bleu_val_freq']))
# Reload model if necessary
if config['reload']:
extensions.append(LoadNMT(config['saveto']))
# Plot cost in bokeh if necessary
if use_bokeh and BOKEH_AVAILABLE:
extensions.append(
Plot(config['model_save_directory'],
channels=[[
'decoder_cost', 'validation_set_bleu_score',
'validation_set_meteor_score'
]],
every_n_batches=10))
# Set up training algorithm
logger.info("Initializing training algorithm")
# if there is dropout or random noise, we need to use the output of the modified graph
if config['dropout'] < 1.0 or config['weight_noise_ff'] > 0.0:
algorithm = GradientDescent(cost=cg.outputs[0],
parameters=cg.parameters,
step_rule=CompositeRule([
StepClipping(config['step_clipping']),
eval(config['step_rule'])()
]))
else:
algorithm = GradientDescent(cost=cost,
parameters=cg.parameters,
step_rule=CompositeRule([
StepClipping(config['step_clipping']),
eval(config['step_rule'])()
]))
# enrich the logged information
extensions.append(Timing(every_n_batches=100))
# Initialize main loop
logger.info("Initializing main loop")
main_loop = MainLoop(model=training_model,
algorithm=algorithm,
data_stream=tr_stream,
extensions=extensions)
# Train!
main_loop.run()
def discriminator_parameters(self):
return list(Selector([self.discriminator]).get_parameters().values())
def generator_parameters(self):
return list(
Selector([self.encoder, self.decoder]).get_parameters().values())
def train(config, save_path, bokeh_name,
params, bokeh_server, test_tag, use_load_ext,
load_log, fast_start, validation_epochs, validation_batches,
per_epochs, per_batches):
root_path, extension = os.path.splitext(save_path)
data = Data(**config['data'])
# Build the main brick and initialize all parameters.
recognizer = SpeechRecognizer(
data.recordings_source, data.labels_source,
data.eos_label,
data.num_features, data.num_labels,
name="recognizer",
data_prepend_eos=data.prepend_eos,
character_map=data.character_map,
**config["net"])
for brick_path, attribute_dict in sorted(
config['initialization'].items(),
key=lambda (k, v): -k.count('/')):
for attribute, value in attribute_dict.items():
brick, = Selector(recognizer).select(brick_path).bricks
setattr(brick, attribute, value)
brick.push_initialization_config()
recognizer.initialize()
# Separate attention_params to be handled differently
# when regularization is applied
attention = recognizer.generator.transition.attention
attention_params = Selector(attention).get_parameters().values()
logger.info(
"Initialization schemes for all bricks.\n"
"Works well only in my branch with __repr__ added to all them,\n"
"there is an issue #463 in Blocks to do that properly.")
def show_init_scheme(cur):
result = dict()
for attr in dir(cur):
if attr.endswith('_init'):
result[attr] = getattr(cur, attr)
for child in cur.children:
result[child.name] = show_init_scheme(child)
return result
logger.info(pprint.pformat(show_init_scheme(recognizer)))
if params:
logger.info("Load parameters from " + params)
recognizer.load_params(params)
if test_tag:
tensor.TensorVariable.__str__ = tensor.TensorVariable.__repr__
__stream = data.get_stream("train")
__data = next(__stream.get_epoch_iterator(as_dict=True))
recognizer.recordings.tag.test_value = __data[data.recordings_source]
recognizer.recordings_mask.tag.test_value = __data[data.recordings_source + '_mask']
recognizer.labels.tag.test_value = __data[data.labels_source]
recognizer.labels_mask.tag.test_value = __data[data.labels_source + '_mask']
theano.config.compute_test_value = 'warn'
batch_cost = recognizer.get_cost_graph().sum()
batch_size = named_copy(recognizer.recordings.shape[1], "batch_size")
# Assumes constant batch size. `aggregation.mean` is not used because
# of Blocks #514.
cost = batch_cost / batch_size
cost.name = "sequence_log_likelihood"
logger.info("Cost graph is built")
# Fetch variables useful for debugging.
# It is important not to use any aggregation schemes here,
# as it's currently impossible to spread the effect of
# regularization on their variables, see Blocks #514.
cost_cg = ComputationGraph(cost)
r = recognizer
energies, = VariableFilter(
applications=[r.generator.readout.readout], name="output_0")(
cost_cg)
bottom_output, = VariableFilter(
applications=[r.bottom.apply], name="output")(
cost_cg)
attended, = VariableFilter(
applications=[r.generator.transition.apply], name="attended")(
cost_cg)
attended_mask, = VariableFilter(
applications=[r.generator.transition.apply], name="attended_mask")(
cost_cg)
weights, = VariableFilter(
applications=[r.generator.evaluate], name="weights")(
cost_cg)
max_recording_length = named_copy(r.recordings.shape[0],
"max_recording_length")
# To exclude subsampling related bugs
max_attended_mask_length = named_copy(attended_mask.shape[0],
"max_attended_mask_length")
max_attended_length = named_copy(attended.shape[0],
"max_attended_length")
max_num_phonemes = named_copy(r.labels.shape[0],
"max_num_phonemes")
min_energy = named_copy(energies.min(), "min_energy")
max_energy = named_copy(energies.max(), "max_energy")
mean_attended = named_copy(abs(attended).mean(),
"mean_attended")
mean_bottom_output = named_copy(abs(bottom_output).mean(),
"mean_bottom_output")
weights_penalty = named_copy(monotonicity_penalty(weights, r.labels_mask),
"weights_penalty")
weights_entropy = named_copy(entropy(weights, r.labels_mask),
"weights_entropy")
mask_density = named_copy(r.labels_mask.mean(),
"mask_density")
cg = ComputationGraph([
cost, weights_penalty, weights_entropy,
min_energy, max_energy,
mean_attended, mean_bottom_output,
batch_size, max_num_phonemes,
mask_density])
# Regularization. It is applied explicitly to all variables
# of interest, it could not be applied to the cost only as it
# would not have effect on auxiliary variables, see Blocks #514.
reg_config = config['regularization']
regularized_cg = cg
if reg_config.get('dropout'):
logger.info('apply dropout')
regularized_cg = apply_dropout(cg, [bottom_output], 0.5)
if reg_config.get('noise'):
logger.info('apply noise')
noise_subjects = [p for p in cg.parameters if p not in attention_params]
regularized_cg = apply_noise(cg, noise_subjects, reg_config['noise'])
regularized_cost = regularized_cg.outputs[0]
regularized_weights_penalty = regularized_cg.outputs[1]
# Model is weird class, we spend lots of time arguing with Bart
# what it should be. However it can already nice things, e.g.
# one extract all the parameters from the computation graphs
# and give them hierahical names. This help to notice when a
# because of some bug a parameter is not in the computation
# graph.
model = SpeechModel(regularized_cost)
params = model.get_parameter_dict()
logger.info("Parameters:\n" +
pprint.pformat(
[(key, params[key].get_value().shape) for key
in sorted(params.keys())],
width=120))
# Define the training algorithm.
train_conf = config['training']
clipping = StepClipping(train_conf['gradient_threshold'])
clipping.threshold.name = "gradient_norm_threshold"
rule_names = train_conf.get('rules', ['momentum'])
core_rules = []
if 'momentum' in rule_names:
logger.info("Using scaling and momentum for training")
core_rules.append(Momentum(train_conf['scale'], train_conf['momentum']))
if 'adadelta' in rule_names:
logger.info("Using AdaDelta for training")
core_rules.append(AdaDelta(train_conf['decay_rate'], train_conf['epsilon']))
max_norm_rules = []
if reg_config.get('max_norm', False):
logger.info("Apply MaxNorm")
maxnorm_subjects = VariableFilter(roles=[WEIGHT])(cg.parameters)
if reg_config.get('max_norm_exclude_lookup', False):
maxnorm_subjects = [v for v in maxnorm_subjects
if not isinstance(get_brick(v), LookupTable)]
logger.info("Parameters covered by MaxNorm:\n"
+ pprint.pformat([name for name, p in params.items()
if p in maxnorm_subjects]))
logger.info("Parameters NOT covered by MaxNorm:\n"
+ pprint.pformat([name for name, p in params.items()
if not p in maxnorm_subjects]))
max_norm_rules = [
Restrict(VariableClipping(reg_config['max_norm'], axis=0),
maxnorm_subjects)]
algorithm = GradientDescent(
cost=regularized_cost +
reg_config.get("penalty_coof", .0) * regularized_weights_penalty / batch_size +
reg_config.get("decay", .0) *
l2_norm(VariableFilter(roles=[WEIGHT])(cg.parameters)) ** 2,
parameters=params.values(),
step_rule=CompositeRule(
[clipping] + core_rules + max_norm_rules +
# Parameters are not changed at all
# when nans are encountered.
[RemoveNotFinite(0.0)]))
# More variables for debugging: some of them can be added only
# after the `algorithm` object is created.
observables = regularized_cg.outputs
observables += [
algorithm.total_step_norm, algorithm.total_gradient_norm,
clipping.threshold]
for name, param in params.items():
num_elements = numpy.product(param.get_value().shape)
norm = param.norm(2) / num_elements ** 0.5
grad_norm = algorithm.gradients[param].norm(2) / num_elements ** 0.5
step_norm = algorithm.steps[param].norm(2) / num_elements ** 0.5
stats = tensor.stack(norm, grad_norm, step_norm, step_norm / grad_norm)
stats.name = name + '_stats'
observables.append(stats)
def attach_aggregation_schemes(variables):
# Aggregation specification has to be factored out as a separate
# function as it has to be applied at the very last stage
# separately to training and validation observables.
result = []
for var in variables:
if var.name == 'weights_penalty':
result.append(named_copy(aggregation.mean(var, batch_size),
'weights_penalty_per_recording'))
elif var.name == 'weights_entropy':
result.append(named_copy(aggregation.mean(
var, recognizer.labels_mask.sum()), 'weights_entropy_per_label'))
else:
result.append(var)
return result
# Build main loop.
logger.info("Initialize extensions")
extensions = []
if use_load_ext and params:
extensions.append(Load(params, load_iteration_state=True, load_log=True))
if load_log and params:
extensions.append(LoadLog(params))
extensions += [
Timing(after_batch=True),
CGStatistics(),
#CodeVersion(['lvsr']),
]
extensions.append(TrainingDataMonitoring(
[observables[0], algorithm.total_gradient_norm,
algorithm.total_step_norm, clipping.threshold,
max_recording_length,
max_attended_length, max_attended_mask_length], after_batch=True))
average_monitoring = TrainingDataMonitoring(
attach_aggregation_schemes(observables),
prefix="average", every_n_batches=10)
extensions.append(average_monitoring)
validation = DataStreamMonitoring(
attach_aggregation_schemes([cost, weights_entropy, weights_penalty]),
data.get_stream("valid"), prefix="valid").set_conditions(
before_first_epoch=not fast_start,
every_n_epochs=validation_epochs,
every_n_batches=validation_batches,
after_training=False)
extensions.append(validation)
recognizer.init_beam_search(10)
per = PhonemeErrorRate(recognizer, data.get_dataset("valid"))
per_monitoring = DataStreamMonitoring(
[per], data.get_stream("valid", batches=False, shuffle=False),
prefix="valid").set_conditions(
before_first_epoch=not fast_start,
every_n_epochs=per_epochs,
every_n_batches=per_batches,
after_training=False)
extensions.append(per_monitoring)
track_the_best_per = TrackTheBest(
per_monitoring.record_name(per)).set_conditions(
before_first_epoch=True, after_epoch=True)
track_the_best_likelihood = TrackTheBest(
validation.record_name(cost)).set_conditions(
before_first_epoch=True, after_epoch=True)
extensions += [track_the_best_likelihood, track_the_best_per]
extensions.append(AdaptiveClipping(
algorithm.total_gradient_norm.name,
clipping, train_conf['gradient_threshold'],
decay_rate=0.998, burnin_period=500))
extensions += [
SwitchOffLengthFilter(data.length_filter,
after_n_batches=train_conf.get('stop_filtering')),
FinishAfter(after_n_batches=train_conf['num_batches'],
after_n_epochs=train_conf['num_epochs'])
.add_condition(["after_batch"], _gradient_norm_is_none),
# Live plotting: requires launching `bokeh-server`
# and allows to see what happens online.
Plot(bokeh_name
if bokeh_name
else os.path.basename(save_path),
[# Plot 1: training and validation costs
[average_monitoring.record_name(regularized_cost),
validation.record_name(cost)],
# Plot 2: gradient norm,
[average_monitoring.record_name(algorithm.total_gradient_norm),
average_monitoring.record_name(clipping.threshold)],
# Plot 3: phoneme error rate
[per_monitoring.record_name(per)],
# Plot 4: training and validation mean weight entropy
[average_monitoring._record_name('weights_entropy_per_label'),
validation._record_name('weights_entropy_per_label')],
# Plot 5: training and validation monotonicity penalty
[average_monitoring._record_name('weights_penalty_per_recording'),
validation._record_name('weights_penalty_per_recording')]],
every_n_batches=10,
server_url=bokeh_server),
Checkpoint(save_path,
before_first_epoch=not fast_start, after_epoch=True,
every_n_batches=train_conf.get('save_every_n_batches'),
save_separately=["model", "log"],
use_cpickle=True)
.add_condition(
['after_epoch'],
OnLogRecord(track_the_best_per.notification_name),
(root_path + "_best" + extension,))
.add_condition(
['after_epoch'],
OnLogRecord(track_the_best_likelihood.notification_name),
(root_path + "_best_ll" + extension,)),
ProgressBar(),
Printing(every_n_batches=1,
attribute_filter=PrintingFilterList()
)]
# Save the config into the status
log = TrainingLog()
log.status['_config'] = repr(config)
main_loop = MainLoop(
model=model, log=log, algorithm=algorithm,
data_stream=data.get_stream("train"),
extensions=extensions)
main_loop.run()
def create_training_computation_graphs(
z_dim,
image_size,
net_depth,
discriminative_regularization,
classifer,
vintage,
reconstruction_factor,
kl_factor,
discriminative_factor,
disc_weights,
):
x = tensor.tensor4("features")
pi = numpy.cast[theano.config.floatX](numpy.pi)
bricks = create_model_bricks(z_dim=z_dim, image_size=image_size, depth=net_depth)
encoder_convnet, encoder_mlp, decoder_convnet, decoder_mlp = bricks
if discriminative_regularization:
if vintage:
classifier_model = Model(load(classifer).algorithm.cost)
else:
with open(classifer, "rb") as src:
classifier_model = Model(load(src).algorithm.cost)
selector = Selector(classifier_model.top_bricks)
classifier_convnet, = selector.select("/convnet").bricks
classifier_mlp, = selector.select("/mlp").bricks
random_brick = Random()
# Initialize conditional variances
log_sigma_theta = shared_floatx(numpy.zeros((3, image_size, image_size)), name="log_sigma_theta")
add_role(log_sigma_theta, PARAMETER)
variance_parameters = [log_sigma_theta]
num_disc_layers = 0
if discriminative_regularization:
# We add discriminative regularization for the batch-normalized output
# of the strided layers of the classifier.
for layer in classifier_convnet.layers[1::3]:
log_sigma = shared_floatx(numpy.zeros(layer.get_dim("output")), name="{}_log_sigma".format(layer.name))
add_role(log_sigma, PARAMETER)
variance_parameters.append(log_sigma)
# include mlp
# DISABLED
# log_sigma = shared_floatx(
# numpy.zeros([classifier_mlp.output_dim]),
# name='{}_log_sigma'.format("MLP"))
# add_role(log_sigma, PARAMETER)
# variance_parameters.append(log_sigma)
# diagnostic
num_disc_layers = len(variance_parameters) - 1
print("Applying discriminative regularization on {} layers".format(num_disc_layers))
# Computation graph creation is encapsulated within this function in order
# to allow selecting which parts of the graph will use batch statistics for
# batch normalization and which parts will use population statistics.
# Specifically, we'd like to use population statistics for the classifier
# even in the training graph.
def create_computation_graph():
# Encode
phi = encoder_mlp.apply(encoder_convnet.apply(x).flatten(ndim=2))
nlat = encoder_mlp.output_dim // 2
mu_phi = phi[:, :nlat]
log_sigma_phi = phi[:, nlat:]
# Sample from the approximate posterior
epsilon = random_brick.theano_rng.normal(size=mu_phi.shape, dtype=mu_phi.dtype)
z = mu_phi + epsilon * tensor.exp(log_sigma_phi)
# Decode
mu_theta = decoder_convnet.apply(decoder_mlp.apply(z).reshape((-1,) + decoder_convnet.get_dim("input_")))
log_sigma = log_sigma_theta.dimshuffle("x", 0, 1, 2)
# Compute KL and reconstruction terms
kl_term = 0.5 * (tensor.exp(2 * log_sigma_phi) + mu_phi ** 2 - 2 * log_sigma_phi - 1).sum(axis=1)
reconstruction_term = -0.5 * (
tensor.log(2 * pi) + 2 * log_sigma + (x - mu_theta) ** 2 / tensor.exp(2 * log_sigma)
).sum(axis=[1, 2, 3])
discriminative_layer_terms = [None] * num_disc_layers
for i in range(num_disc_layers):
discriminative_layer_terms[i] = tensor.zeros_like(kl_term)
discriminative_term = tensor.zeros_like(kl_term)
if discriminative_regularization:
# Propagate both the input and the reconstruction through the classifier
acts_cg = ComputationGraph([classifier_mlp.apply(classifier_convnet.apply(x).flatten(ndim=2))])
acts_hat_cg = ComputationGraph([classifier_mlp.apply(classifier_convnet.apply(mu_theta).flatten(ndim=2))])
# Retrieve activations of interest and compute discriminative
# regularization reconstruction terms
cur_layer = 0
# CLASSIFIER MLP DISABLED
# for i, zip_pair in enumerate(zip(classifier_convnet.layers[1::3] + [classifier_mlp],
for i, zip_pair in enumerate(zip(classifier_convnet.layers[1::3], variance_parameters[1:])):
layer, log_sigma = zip_pair
variable_filter = VariableFilter(roles=[OUTPUT], bricks=[layer])
d, = variable_filter(acts_cg)
d_hat, = variable_filter(acts_hat_cg)
# TODO: this conditional could be less brittle
if "mlp" in layer.name.lower():
log_sigma = log_sigma.dimshuffle("x", 0)
sumaxis = [1]
else:
log_sigma = log_sigma.dimshuffle("x", 0, 1, 2)
sumaxis = [1, 2, 3]
discriminative_layer_term_unweighted = -0.5 * (
tensor.log(2 * pi) + 2 * log_sigma + (d - d_hat) ** 2 / tensor.exp(2 * log_sigma)
).sum(axis=sumaxis)
discriminative_layer_terms[i] = (
discriminative_factor * disc_weights[cur_layer] * discriminative_layer_term_unweighted
)
discriminative_term = discriminative_term + discriminative_layer_terms[i]
cur_layer = cur_layer + 1
# scale terms (disc is prescaled by layer)
reconstruction_term = reconstruction_factor * reconstruction_term
kl_term = kl_factor * kl_term
# total_reconstruction_term is reconstruction + discriminative
total_reconstruction_term = reconstruction_term + discriminative_term
# cost is mean(kl - total reconstruction)
cost = (kl_term - total_reconstruction_term).mean()
return ComputationGraph([cost, kl_term, reconstruction_term, discriminative_term] + discriminative_layer_terms)
cg = create_computation_graph()
with batch_normalization(encoder_convnet, encoder_mlp, decoder_convnet, decoder_mlp):
bn_cg = create_computation_graph()
return cg, bn_cg, variance_parameters
def create_training_computation_graphs(discriminative_regularization):
x = tensor.tensor4('features')
pi = numpy.cast[theano.config.floatX](numpy.pi)
bricks = create_model_bricks()
encoder_convnet, encoder_mlp, decoder_convnet, decoder_mlp = bricks
if discriminative_regularization:
classifier_model = Model(load('celeba_classifier.zip').algorithm.cost)
selector = Selector(classifier_model.top_bricks)
classifier_convnet, = selector.select('/convnet').bricks
random_brick = Random()
# Initialize conditional variances
log_sigma_theta = shared_floatx(
numpy.zeros((3, 64, 64)), name='log_sigma_theta')
add_role(log_sigma_theta, PARAMETER)
variance_parameters = [log_sigma_theta]
if discriminative_regularization:
# We add discriminative regularization for the batch-normalized output
# of the strided layers of the classifier.
for layer in classifier_convnet.layers[4::6]:
log_sigma = shared_floatx(
numpy.zeros(layer.get_dim('output')),
name='{}_log_sigma'.format(layer.name))
add_role(log_sigma, PARAMETER)
variance_parameters.append(log_sigma)
# Computation graph creation is encapsulated within this function in order
# to allow selecting which parts of the graph will use batch statistics for
# batch normalization and which parts will use population statistics.
# Specifically, we'd like to use population statistics for the classifier
# even in the training graph.
def create_computation_graph():
# Encode
phi = encoder_mlp.apply(encoder_convnet.apply(x).flatten(ndim=2))
nlat = encoder_mlp.output_dim // 2
mu_phi = phi[:, :nlat]
log_sigma_phi = phi[:, nlat:]
# Sample from the approximate posterior
epsilon = random_brick.theano_rng.normal(
size=mu_phi.shape, dtype=mu_phi.dtype)
z = mu_phi + epsilon * tensor.exp(log_sigma_phi)
# Decode
mu_theta = decoder_convnet.apply(
decoder_mlp.apply(z).reshape(
(-1,) + decoder_convnet.get_dim('input_')))
log_sigma = log_sigma_theta.dimshuffle('x', 0, 1, 2)
# Compute KL and reconstruction terms
kl_term = 0.5 * (
tensor.exp(2 * log_sigma_phi) + mu_phi ** 2 - 2 * log_sigma_phi - 1
).sum(axis=1)
reconstruction_term = -0.5 * (
tensor.log(2 * pi) + 2 * log_sigma +
(x - mu_theta) ** 2 / tensor.exp(2 * log_sigma)
).sum(axis=[1, 2, 3])
total_reconstruction_term = reconstruction_term
if discriminative_regularization:
# Propagate both the input and the reconstruction through the
# classifier
acts_cg = ComputationGraph([classifier_convnet.apply(x)])
acts_hat_cg = ComputationGraph(
[classifier_convnet.apply(mu_theta)])
# Retrieve activations of interest and compute discriminative
# regularization reconstruction terms
for layer, log_sigma in zip(classifier_convnet.layers[4::6],
variance_parameters[1:]):
variable_filter = VariableFilter(roles=[OUTPUT],
bricks=[layer])
d, = variable_filter(acts_cg)
d_hat, = variable_filter(acts_hat_cg)
log_sigma = log_sigma.dimshuffle('x', 0, 1, 2)
total_reconstruction_term += -0.5 * (
tensor.log(2 * pi) + 2 * log_sigma +
(d - d_hat) ** 2 / tensor.exp(2 * log_sigma)
).sum(axis=[1, 2, 3])
cost = (kl_term - total_reconstruction_term).mean()
return ComputationGraph([cost, kl_term, reconstruction_term])
cg = create_computation_graph()
with batch_normalization(encoder_convnet, encoder_mlp,
decoder_convnet, decoder_mlp):
bn_cg = create_computation_graph()
return cg, bn_cg, variance_parameters
def get_zdim(self):
selector = Selector(self.model.top_bricks)
decoder_mlp, = selector.select("/decoder_mlp").bricks
return decoder_mlp.input_dim
def run(batch_size, save_path, z_dim, oldmodel, discriminative_regularization,
classifier, vintage, monitor_every, monitor_before, checkpoint_every, dataset, color_convert,
image_size, net_depth, subdir,
reconstruction_factor, kl_factor, discriminative_factor, disc_weights,
num_epochs):
if dataset:
streams = create_custom_streams(filename=dataset,
training_batch_size=batch_size,
monitoring_batch_size=batch_size,
include_targets=False,
color_convert=color_convert)
else:
streams = create_celeba_streams(training_batch_size=batch_size,
monitoring_batch_size=batch_size,
include_targets=False)
main_loop_stream, train_monitor_stream, valid_monitor_stream = streams[:3]
# Compute parameter updates for the batch normalization population
# statistics. They are updated following an exponential moving average.
rval = create_training_computation_graphs(
z_dim, image_size, net_depth, discriminative_regularization, classifier,
vintage, reconstruction_factor, kl_factor, discriminative_factor, disc_weights)
cg, bn_cg, variance_parameters = rval
pop_updates = list(
set(get_batch_normalization_updates(bn_cg, allow_duplicates=True)))
decay_rate = 0.05
extra_updates = [(p, m * decay_rate + p * (1 - decay_rate))
for p, m in pop_updates]
model = Model(bn_cg.outputs[0])
selector = Selector(
find_bricks(
model.top_bricks,
lambda brick: brick.name in ('encoder_convnet', 'encoder_mlp',
'decoder_convnet', 'decoder_mlp')))
parameters = list(selector.get_parameters().values()) + variance_parameters
# Prepare algorithm
step_rule = Adam()
algorithm = GradientDescent(cost=bn_cg.outputs[0],
parameters=parameters,
step_rule=step_rule)
algorithm.add_updates(extra_updates)
# Prepare monitoring
sys.setrecursionlimit(1000000)
monitored_quantities_list = []
for graph in [bn_cg, cg]:
# cost, kl_term, reconstruction_term, discriminative_term = graph.outputs
cost, kl_term, reconstruction_term, discriminative_term = graph.outputs[:4]
discriminative_layer_terms = graph.outputs[4:]
cost.name = 'nll_upper_bound'
avg_kl_term = kl_term.mean(axis=0)
avg_kl_term.name = 'avg_kl_term'
avg_reconstruction_term = -reconstruction_term.mean(axis=0)
avg_reconstruction_term.name = 'avg_reconstruction_term'
avg_discriminative_term = discriminative_term.mean(axis=0)
avg_discriminative_term.name = 'avg_discriminative_term'
num_layer_terms = len(discriminative_layer_terms)
avg_discriminative_layer_terms = [None] * num_layer_terms
for i, term in enumerate(discriminative_layer_terms):
avg_discriminative_layer_terms[i] = discriminative_layer_terms[i].mean(axis=0)
avg_discriminative_layer_terms[i].name = "avg_discriminative_term_layer_{:02d}".format(i)
monitored_quantities_list.append(
[cost, avg_kl_term, avg_reconstruction_term,
avg_discriminative_term] + avg_discriminative_layer_terms)
train_monitoring = DataStreamMonitoring(
monitored_quantities_list[0], train_monitor_stream, prefix="train",
updates=extra_updates, after_epoch=False, before_first_epoch=monitor_before,
every_n_epochs=monitor_every)
valid_monitoring = DataStreamMonitoring(
monitored_quantities_list[1], valid_monitor_stream, prefix="valid",
after_epoch=False, before_first_epoch=monitor_before,
every_n_epochs=monitor_every)
# Prepare checkpoint
checkpoint = Checkpoint(save_path, every_n_epochs=checkpoint_every,
before_training=True, use_cpickle=True)
sample_checkpoint = SampleCheckpoint(interface=DiscGenModel, z_dim=z_dim/2,
image_size=(image_size, image_size), channels=3,
dataset=dataset, split="valid", save_subdir=subdir,
before_training=True, after_epoch=True)
# TODO: why does z_dim=foo become foo/2?
extensions = [Timing(),
FinishAfter(after_n_epochs=num_epochs),
checkpoint,
sample_checkpoint,
train_monitoring, valid_monitoring,
Printing(),
ProgressBar()]
main_loop = MainLoop(model=model, data_stream=main_loop_stream,
algorithm=algorithm, extensions=extensions)
if oldmodel is not None:
print("Initializing parameters with old model {}".format(oldmodel))
try:
saved_model = load(oldmodel)
except AttributeError:
# newer version of blocks
with open(oldmodel, 'rb') as src:
saved_model = load(src)
main_loop.model.set_parameter_values(
saved_model.model.get_parameter_values())
del saved_model
main_loop.run()
def create_model(config, data,
load_path=None,
test_tag=False):
"""
Build the main brick and initialize or load all parameters.
Parameters
----------
config : dict
the configuration dict
data : object of class Data
the dataset creation object
load_path : str or None
if given a string, it will be used to load model parameters. Else,
the parameters will be randomly initalized by calling
recognizer.initialize()
test_tag : bool
if true, will add tag the input variables with test values
"""
# First tell the recognizer about required data sources
net_config = dict(config["net"])
bottom_class = net_config['bottom']['bottom_class']
input_dims = {
source: data.num_features(source)
for source in bottom_class.vector_input_sources}
input_num_chars = {
source: len(data.character_map(source))
for source in bottom_class.discrete_input_sources}
recognizer = SpeechRecognizer(
input_dims=input_dims,
input_num_chars=input_num_chars,
eos_label=data.eos_label,
num_phonemes=data.num_labels,
name="recognizer",
data_prepend_eos=data.prepend_eos,
character_map=data.character_map('labels'),
**net_config)
if load_path:
recognizer.load_params(load_path)
else:
for brick_path, attribute_dict in sorted(
config['initialization'].items(),
key=lambda (k, v): k.count('/')):
for attribute, value in attribute_dict.items():
brick, = Selector(recognizer).select(brick_path).bricks
setattr(brick, attribute, value)
brick.push_initialization_config()
recognizer.initialize()
if test_tag:
# fails with newest theano
# tensor.TensorVariable.__str__ = tensor.TensorVariable.__repr__
__stream = data.get_stream("train")
__data = next(__stream.get_epoch_iterator(as_dict=True))
for __var in recognizer.inputs.values():
__var.tag.test_value = __data[__var.name]
theano.config.compute_test_value = 'warn'
return recognizer
def main():
# set para
config = getattr(configurations, "get_config_cs2en")()
logger.info("Model options:\n{}".format(pprint.pformat(config)))
tr_stream = get_tr_stream(**config)
# Create Theano variables
logger.info("Creating theano variables")
source_sentence0 = tensor.lmatrix("source0")
source_sentence_mask0 = tensor.matrix("source0_mask")
target_sentence0 = tensor.lmatrix("target0")
target_sentence_mask0 = tensor.matrix("target0_mask")
source_sentence1 = tensor.lmatrix("source1")
source_sentence_mask1 = tensor.matrix("source1_mask")
target_sentence1 = tensor.lmatrix("target1")
target_sentence_mask1 = tensor.matrix("target1_mask")
source_sentence2 = tensor.lmatrix("source2")
source_sentence_mask2 = tensor.matrix("source2_mask")
target_sentence2 = tensor.lmatrix("target2")
target_sentence_mask2 = tensor.matrix("target2_mask")
sampling_input0 = tensor.lmatrix("input0")
sampling_input1 = tensor.lmatrix("input1")
sampling_input2 = tensor.lmatrix("input2")
sampling_hstates0 = tensor.fmatrix("hstates0")
sampling_hstates1 = tensor.fmatrix("hstates1")
sampling_hstates2 = tensor.fmatrix("hstates2")
sampling_lastrep0 = tensor.tensor3("lastrep0")
sampling_lastrep1 = tensor.tensor3("lastrep1")
hstates = theano.shared(value=numpy.zeros((config["enc_nhids"]), dtype=theano.config.floatX), name="hstates")
# Get vocab
sources = get_attr_rec(tr_stream, "data_stream")
src_vocab = sources.data_streams[0].dataset.dictionary
trg_vocab = sources.data_streams[1].dataset.dictionary
# Construct model
logger.info("Building PoemModel")
block0 = PoemBlock(config=config, blockid="block0", name="poemblock0")
block1 = PoemBlock(config=config, blockid="block1", name="poemblock1")
block2 = PoemBlock(config=config, blockid="block2", name="poemblock2")
cost0, hsta0, rep0 = block0.cost(
source_sentence0,
source_sentence_mask0,
source_sentence_mask1,
source_sentence_mask0,
target_sentence0,
target_sentence_mask0,
hstates,
lastrep0=None,
lastrep1=None,
)
cost1, hsta1, rep1 = block1.cost(
source_sentence1,
source_sentence_mask0,
source_sentence_mask1,
source_sentence_mask1,
target_sentence1,
target_sentence_mask1,
hsta0,
lastrep0=rep0,
lastrep1=None,
)
cost2, hsta2, rep2 = block2.cost(
source_sentence2,
source_sentence_mask0,
source_sentence_mask1,
source_sentence_mask2,
target_sentence2,
target_sentence_mask2,
hsta1,
lastrep0=rep0,
lastrep1=rep1,
)
cost = cost0 + cost1 + cost2
cost.name = "total_cost"
logger.info("Creating computational graph")
cg = ComputationGraph(cost)
# Initialize model
logger.info("Initializing model")
block0.set_initw(IsotropicGaussian(config["weight_scale"]))
block0.set_initb(Constant(0))
block0.push_initialization_config()
block0.set_specialinit(Orthogonal(), Orthogonal())
block0.initialize()
block1.set_initw(IsotropicGaussian(config["weight_scale"]))
block1.set_initb(Constant(0))
block1.push_initialization_config()
block1.set_specialinit(Orthogonal(), Orthogonal())
block1.initialize()
block2.set_initw(IsotropicGaussian(config["weight_scale"]))
block2.set_initb(Constant(0))
block2.push_initialization_config()
block2.set_specialinit(Orthogonal(), Orthogonal())
block2.initialize()
# apply dropout for regularization
if config["dropout"] < 1.0:
# dropout is applied to the output of maxout in ghog
logger.info("Applying dropout")
dropout_inputs = [x for x in cg.intermediary_variables if x.name == "maxout_apply_output"]
cg = apply_dropout(cg, dropout_inputs, config["dropout"])
# Print shapes
shapes = [param.get_value().shape for param in cg.parameters]
logger.info("Parameter shapes: ")
for shape, count in Counter(shapes).most_common():
logger.info(" {:15}: {}".format(shape, count))
logger.info("Total number of parameters: {}".format(len(shapes)))
# Print parameter names
param_dict = Selector(block0).get_parameters()
logger.info("Parameter names: ")
for name, value in param_dict.items():
logger.info(" {:15}: {}".format(value.get_value().shape, name))
logger.info("Total number of parameters: {}".format(len(param_dict)))
# Set up training model
logger.info("Building model")
training_model = Model(cost)
# logger.info(cg.auxiliary_variables)
# logger.info("______________________________")
"""
weights = ""
for va in cg.auxiliary_variables:
if va.name == "sequence_generator_block0_cost_matrix_weighted_averages":
weights = va
weightsize = weights.shape
weightsize.name = "weightsize"
states = ""
for va in cg.auxiliary_variables:
if va.name == "sequence_generator_block0_cost_matrix_states":
states = va
statesize = states.shape
statesize.name = "statesize"
rep = ""
for va in cg.auxiliary_variables:
if va.name == "poemblock0_cost_block0hstatesRepeat":
rep = va
repsize = rep.shape
repsize.name = "repsize"
"""
# Set extensions
logger.info("Initializing extensions")
extensions = [
FinishAfter(after_n_batches=config["finish_after"]),
TrainingDataMonitoring([cost], after_batch=True),
Printing(after_batch=True),
CheckpointNMT(config["saveto"], every_n_batches=config["save_freq"]),
]
# Set up training algorithm
logger.info("Initializing training algorithm")
algorithm = GradientDescent(
cost=cost,
parameters=cg.parameters,
step_rule=CompositeRule([StepClipping(config["step_clipping"]), eval(config["step_rule"])()]),
)
# Reload model if necessary
if config["reload"]:
extensions.append(LoadNMT(config["saveto"]))
# Add sampling
if config["hook_samples"] >= 1:
logger.info("Building sampler")
generated0 = block0.mygenerate(sampling_input0, sampling_hstates0)
search_model0 = Model(generated0)
generated1 = block1.mygenerate(sampling_input1, sampling_hstates1, sampling_lastrep0)
search_model1 = Model(generated1)
generated2 = block2.mygenerate(sampling_input2, sampling_hstates2, sampling_lastrep0, sampling_lastrep1)
search_model2 = Model(generated2)
extensions.append(
Sampler(
config=config,
model0=search_model0,
model1=search_model1,
model2=search_model2,
data_stream=tr_stream,
hook_samples=config["hook_samples"],
every_n_batches=config["sampling_freq"],
src_vocab_size=config["src_vocab_size"],
)
)
logger.info("End of building sampler")
# Initialize main loop
logger.info("Initializing main loop")
main_loop = MainLoop(model=training_model, algorithm=algorithm, data_stream=tr_stream, extensions=extensions)
# Train!
main_loop.run()
def get_gradients(self, features, n_samples):
"""Perform inference and calculate gradients.
Returns
-------
log_px : T.fvector
log_psx : T.fvector
gradients : OrderedDict
"""
p_layers = self.p_layers
q_layers = self.q_layers
n_layers = len(p_layers)
batch_size = features.shape[0]
x = replicate_batch(features, n_samples)
# Get Q-samples
samples, log_p, log_q = self.sample_q(x)
# Reshape and sum
samples = unflatten_values(samples, batch_size, n_samples)
log_p = unflatten_values(log_p, batch_size, n_samples)
log_q = unflatten_values(log_q, batch_size, n_samples)
log_p_all = sum(log_p)
log_q_all = sum(log_q)
# Approximate log p(x)
log_px_bound = log_p_all[:,0] - log_q_all[:,0]
log_px = logsumexp(log_p_all-log_q_all, axis=-1) - tensor.log(n_samples)
log_psx = (logsumexp((log_p_all-log_q_all)/2, axis=-1) - tensor.log(n_samples)) * 2.
# Calculate IS weights
w = self.importance_weights(log_p, log_q)
wp = w.reshape( (batch_size*n_samples, ) )
wq = w.reshape( (batch_size*n_samples, ) )
wq = wq - (1./n_samples)
samples = flatten_values(samples, batch_size*n_samples)
gradients = OrderedDict()
for l in xrange(n_layers-1):
gradients = merge_gradients(gradients, p_layers[l].get_gradients(samples[l], samples[l+1], weights=wp))
gradients = merge_gradients(gradients, q_layers[l].get_gradients(samples[l+1], samples[l], weights=wq))
gradients = merge_gradients(gradients, p_layers[-1].get_gradients(samples[-1], weights=wp))
if (self.l1reg > 0.) or (self.l2reg > 0.):
reg_gradients = OrderedDict()
params = Selector(self).get_parameters()
for pname, param in params.iteritems():
if has_roles(param, (WEIGHT,)):
reg_cost = self.l1reg * tensor.sum(abs(param)) + self.l2reg * tensor.sum(param**2)
reg_gradients[param] = tensor.grad(reg_cost, param)
gradients = merge_gradients(gradients, reg_gradients)
self.log_p_bound = log_px_bound
self.log_p = log_px
self.log_ph = log_psx
return log_px, log_psx, gradients
print 'Parsing dataset file...'
vocab = Vocab(dataset_path=args.dataset_path)
source_sentence = tensor.lmatrix('source')
encoder = BidirectionalEncoder(vocab.sequenceLength(), args.embed, args.nhidden)
encoder.weights_init = IsotropicGaussian(args.weight_scale)
encoder.biases_init = Constant(0)
encoder.push_initialization_config()
encoder.bidir.prototype.weights_init = Orthogonal()
encoder.initialize()
print 'Parameter names: '
enc_param_dict = Selector(encoder).get_params()
for name, value in enc_param_dict.iteritems():
print ' {:15}: {}'.format(value.get_value().shape, name)
representation = encoder.apply(source_sentence)
print 'Compiling theano function'
f = theano.function([source_sentence], representation)
reps = np.empty(len(vocab.dataset), dtype=object)
bar = Bar('Encoding', max=len(vocab.dataset))
for idx, sentence in enumerate(vocab.dataset):
reps[idx] = f(sentence).transpose((1, 2, 0))
bar.next()
bar.finish()