def importer(*params):
parser = ArgumentParser("Imports old descriptor or BIDS app or CWL"
" descriptor to spec.")
parser.add_argument("type", help="Type of import we are performing",
choices=["bids", "0.4", "cwl", "dcpt"])
parser.add_argument("output_descriptor", help="Where the Boutiques"
" descriptor will be written.")
parser.add_argument("input_descriptor", help="Input descriptor to be"
" converted. For '0.4', is JSON descriptor,"
" for 'dcpt' is JSON descriptor,"
" for 'bids' is base directory of BIDS app,"
" for 'cwl' is YAML descriptor.")
parser.add_argument("-o", "--output-invocation", help="Where to write "
"the invocation if any.")
parser.add_argument("-i", "--input-invocation", help="Input invocation "
" for CWL if any.")
results = parser.parse_args(params)
from boutiques.importer import Importer
importer = Importer(results.input_descriptor,
results.output_descriptor,
results.input_invocation,
results.output_invocation)
if results.type == "0.4":
importer.upgrade_04()
elif results.type == "bids":
importer.import_bids()
elif results.type == "cwl":
importer.import_cwl()
elif results.type == "dcpt":
create(params[1])
importer.import_docopt(params[1])
def importer(*params):
parser = parser_importer()
results = parser.parse_args(params)
from boutiques.importer import Importer
importer = Importer(results.input_descriptor, results.output_descriptor,
results.input_invocation, results.output_invocation)
if results.type == "0.4":
importer.upgrade_04()
elif results.type == "bids":
importer.import_bids()
elif results.type == "cwl":
importer.import_cwl()
elif results.type == "docopt":
create(params[1])
importer.import_docopt(params[1])
def importer(*params):
parser = ArgumentParser("Imports old descriptor or BIDS app to spec.")
parser.add_argument("type",
help="Type of import we are performing",
choices=["bids", "0.4"])
parser.add_argument("descriptor",
help="Where the Boutiques descriptor will be written.")
parser.add_argument(
"input",
help="Input to be convered. For '0.4', is JSON descriptor,"
" for 'bids' is base directory of BIDS app.")
results = parser.parse_args(params)
descriptor = results.descriptor
inp = results.input
from boutiques.importer import Importer
importer = Importer(descriptor)
if results.type == "0.4":
importer.upgrade_04(inp)
elif results.type == "bids":
importer.import_bids(inp)