def gen_conf1():
param_values = deepcopy(default_param_values)
brkga_params = param_values["params"]
brkga_params.population_size = 100
brkga_params.elite_percentage = 0.3
brkga_params.mutants_percentage = 0.1
brkga_params.num_elite_parents = 1
brkga_params.total_parents = 2
brkga_params.bias_type = BiasFunctionType.LOGINVERSE
brkga_params.num_independent_populations = 1
brkga_params.pr_number_pairs = 0
brkga_params.pr_minimum_distance = 0.0
brkga_params.pr_type = PathRelinkingType.DIRECT
brkga_params.pr_selection = PathRelinkingSelection.BESTSOLUTION
brkga_params.alpha_block_size = 1.0
brkga_params.pr_percentage = 1.0
param_values["decoder"] = sum_decoder
param_values["sense"] = Sense.MAXIMIZE
param_values["seed"] = 4013750229
param_values["chromosome_size"] = chromosome_size
param_values["evolutionary_mechanism_on"] = True
print("\n> Building configuration 1")
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
print("> Writing configuration 1")
with open(os.path.join(STATE_DIR, "state1.pickle"), "wb") as hd:
pickle.dump(brkga, hd)
print("> Evolving population 0")
brkga.evolve_population(0)
fitness1 = brkga.get_best_fitness()
chromosome1 = brkga.get_best_chromosome()
brkga.evolve_population(0)
fitness2 = brkga.get_best_fitness()
chromosome2 = brkga.get_best_chromosome()
for _ in range(100):
brkga.evolve_population(0)
fitness102 = brkga.get_best_fitness()
chromosome102 = brkga.get_best_chromosome()
with open(os.path.join(SOLUTION_DIR, "best_solution1.pickle"), "wb") as hd:
pickle.dump(
{
"fitness1": fitness1,
"chromosome1": chromosome1,
"fitness2": fitness2,
"chromosome2": chromosome2,
"fitness102": fitness102,
"chromosome102": chromosome102,
},
hd
)
def main() -> None:
if len(sys.argv) < 4:
print("Usage: python main_minimal.py <seed> <config-file> "
"<num-generations> <tsp-instance-file>")
sys.exit(1)
########################################
# Read the command-line arguments and the instance
########################################
seed = int(sys.argv[1])
configuration_file = sys.argv[2]
num_generations = int(sys.argv[3])
instance_file = sys.argv[4]
print("Reading data...")
instance = TSPInstance(instance_file)
########################################
# Read algorithm parameters
########################################
print("Reading parameters...")
brkga_params, _ = load_configuration(configuration_file)
########################################
# Build the BRKGA data structures and initialize
########################################
print("Building BRKGA data and initializing...")
decoder = TSPDecoder(instance)
brkga = BrkgaMpIpr(decoder=decoder,
sense=Sense.MINIMIZE,
seed=seed,
chromosome_size=instance.num_nodes,
params=brkga_params)
# NOTE: don't forget to initialize the algorithm.
brkga.initialize()
########################################
# Find good solutions / evolve
########################################
print(f"Evolving {num_generations} generations...")
brkga.evolve(num_generations)
best_cost = brkga.get_best_fitness()
print(f"Best cost: {best_cost}")
def test_evolve(self):
"""
Tests evolve() method.
"""
param_values = deepcopy(self.default_param_values)
brkga_params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
# Not initialized
with self.assertRaises(RuntimeError) as context:
brkga.evolve()
self.assertEqual(
str(context.exception).strip(),
"The algorithm hasn't been initialized. "
"Call 'initialize()' before 'evolve()'")
brkga.initialize()
with self.assertRaises(ValueError) as context:
brkga.evolve(-1)
self.assertEqual(
str(context.exception).strip(),
"Number of generations must be large than one. "
"Given -1")
with open(os.path.join(STATE_DIR, "state5.pickle"), "rb") as hd:
brkga = pickle.load(hd)
with open(os.path.join(SOLUTION_DIR, "best_solution5.pickle"),
"rb") as hd:
results = pickle.load(hd)
brkga.evolve()
self.assertEqual(brkga.get_best_fitness(), results["fitness1"])
self.assertEqual(brkga.get_best_chromosome(), results["chromosome1"])
print(f"Elapsed time: {time() - self.start_time :.2f}")
brkga.evolve(10)
self.assertEqual(brkga.get_best_fitness(), results["fitness10"])
self.assertEqual(brkga.get_best_chromosome(), results["chromosome10"])
print(f"Elapsed time: {time() - self.start_time :.2f}")
brkga.evolve(100)
self.assertEqual(brkga.get_best_fitness(), results["fitness100"])
self.assertEqual(brkga.get_best_chromosome(), results["chromosome100"])
print(f"Elapsed time: {time() - self.start_time :.2f}")
def test_reset(self):
"""
Tests reset() method.
"""
param_values = deepcopy(self.default_param_values)
params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
with self.assertRaises(RuntimeError) as context:
brkga.reset()
self.assertEqual(str(context.exception).strip(),
"The algorithm hasn't been initialized. "
"Call 'initialize()' before 'reset()'")
brkga.initialize()
# Create a local RNG and advance it until the same state as the
# internal BRKGA RNG after initialization.
local_rng = Random(param_values["seed"])
skip = 1000 + params.num_independent_populations * \
params.population_size * brkga.chromosome_size
for _ in range(skip):
local_rng.random()
# Assert the both generators are in the same state.
self.assertEqual(brkga._rng.getstate(), local_rng.getstate())
# Create a local chromosome and applied the decoder on it.
local_chr = BaseChromosome([
local_rng.random() for _ in range(param_values["chromosome_size"])
])
param_values["decoder"].decode(local_chr, rewrite=True)
# Reset and test the first individual.
brkga.reset()
self.assertEqual(brkga._current_populations[0].chromosomes[0],
local_chr)
# After reset, the reset phase flag should be deactivated.
self.assertFalse(brkga._reset_phase)
def test_get_current_population(self):
"""
Tests get_current_population() method.
"""
param_values = deepcopy(self.default_param_values)
param_values["params"].num_independent_populations = 3
params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
# Not initialized
with self.assertRaises(RuntimeError) as context:
brkga.get_current_population()
self.assertEqual(str(context.exception).strip(),
"The algorithm hasn't been initialized. "
"Call 'initialize()' before 'get_current_population()'")
brkga.initialize()
# Test invalid population indices.
population_index = -1
with self.assertRaises(ValueError) as context:
brkga.get_current_population(population_index)
self.assertEqual(str(context.exception).strip(),
"Population must be in [0, 2]: -1")
population_index = brkga.params.num_independent_populations
with self.assertRaises(ValueError) as context:
brkga.get_current_population(population_index)
self.assertEqual(str(context.exception).strip(),
"Population must be in [0, 2]: 3")
# Test if it is returning the right population.
for i in range(params.num_independent_populations):
self.assertIs(brkga.get_current_population(i),
brkga._current_populations[i])
def test_get_best_fitness(self):
"""
Tests get_best_fitness() method.
"""
param_values = deepcopy(self.default_param_values)
param_values["sense"] = Sense.MAXIMIZE
param_values["seed"] = 12323
param_values["chromosome_size"] = self.chromosome_size
param_values["params"].population_size = 500
param_values["params"].num_independent_populations = 3
params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
# Not initialized
with self.assertRaises(RuntimeError) as context:
brkga.get_best_fitness()
self.assertEqual(str(context.exception).strip(),
"The algorithm hasn't been initialized. "
"Call 'initialize()' before 'get_best_fitness()'")
brkga.initialize()
########################
# Test for maximization
########################
local_rng = Random(param_values["seed"])
for _ in range(1000):
local_rng.random()
num_individuals = params.population_size * \
params.num_independent_populations
best_value = -math.inf
for _ in range(num_individuals):
local_chr = BaseChromosome([
local_rng.random() for _ in range(param_values["chromosome_size"])
])
best_value = max(
best_value, self.sum_decoder.decode(local_chr, True)
)
# Assert the both generators are in the same state.
self.assertEqual(brkga._rng.getstate(), local_rng.getstate())
# Test the actual value.
self.assertAlmostEqual(brkga.get_best_fitness(), best_value)
########################
# Test for minimization
########################
param_values["sense"] = Sense.MINIMIZE
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
local_rng = Random(param_values["seed"])
for _ in range(1000):
local_rng.random()
num_individuals = params.population_size * \
params.num_independent_populations
best_value = math.inf
for _ in range(num_individuals):
local_chr = BaseChromosome([
local_rng.random() for _ in range(param_values["chromosome_size"])
])
best_value = min(
best_value, self.sum_decoder.decode(local_chr, True)
)
# Assert the both generators are in the same state.
self.assertEqual(brkga._rng.getstate(), local_rng.getstate())
# Test the actual value.
self.assertAlmostEqual(brkga.get_best_fitness(), best_value)
def test_get_chromosome(self):
"""
Tests get_chromosome() method.
"""
param_values = deepcopy(self.default_param_values)
param_values["params"].num_independent_populations = 3
params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
# Not initialized
with self.assertRaises(RuntimeError) as context:
brkga.get_chromosome(0, 0)
self.assertEqual(str(context.exception).strip(),
"The algorithm hasn't been initialized. "
"Call 'initialize()' before 'get_chromosome()'")
brkga.initialize()
# Test invalid population indices.
population_index = -1
position = 0
with self.assertRaises(ValueError) as context:
brkga.get_chromosome(population_index, position)
self.assertEqual(str(context.exception).strip(),
"Population must be in [0, 2]: -1")
population_index = brkga.params.num_independent_populations
position = 0
with self.assertRaises(ValueError) as context:
brkga.get_chromosome(population_index, position)
self.assertEqual(str(context.exception).strip(),
"Population must be in [0, 2]: 3")
# Test invalid chrmosome indices.
population_index = 0
position = -1
with self.assertRaises(ValueError) as context:
brkga.get_chromosome(population_index, position)
self.assertEqual(str(context.exception).strip(),
"Chromosome position must be in [0, 9]: -1")
population_index = 0
position = brkga.params.population_size
with self.assertRaises(ValueError) as context:
brkga.get_chromosome(population_index, position)
self.assertEqual(str(context.exception).strip(),
"Chromosome position must be in [0, 9]: 10")
# Test if the chromosome matches.
# Create a local RNG and advance it until the same state as the
# internal BRKGA RNG after initialization.
local_rng = Random(param_values["seed"])
skip = 1000
for _ in range(skip):
local_rng.random()
# Now, we create the populations, decode them, and sort the
# individuals according to their fitness, reproducing initialize()
# basically.
local_populations = []
for _ in range(brkga.params.num_independent_populations):
population = []
for _ in range(brkga.params.population_size):
local_chr = BaseChromosome([
local_rng.random() for _ in range(param_values["chromosome_size"])
])
fitness = brkga._decoder.decode(local_chr, True)
population.append((fitness, local_chr))
# end for
population.sort(reverse=(brkga.opt_sense == Sense.MAXIMIZE))
local_populations.append(population)
# end for
# Assert the both generators are in the same state.
self.assertEqual(brkga._rng.getstate(), local_rng.getstate())
population_index = 0
position = 0
copy_chr = brkga.get_chromosome(population_index, position)
self.assertEqual(copy_chr, local_populations[population_index][position][1])
self.assertIsNot(copy_chr, local_populations[population_index][position][1])
population_index = 1
position = 1
copy_chr = brkga.get_chromosome(population_index, position)
self.assertEqual(copy_chr, local_populations[population_index][position][1])
self.assertIsNot(copy_chr, local_populations[population_index][position][1])
population_index = brkga.params.num_independent_populations - 1
position = brkga.params.population_size - 1
copy_chr = brkga.get_chromosome(population_index, position)
self.assertEqual(copy_chr, local_populations[population_index][position][1])
self.assertIsNot(copy_chr, local_populations[population_index][position][1])
def main() -> None:
"""
Proceeds with the optimization. Create to avoid spread `global` keywords
around the code.
"""
args = docopt.docopt(__doc__)
# print(args)
configuration_file = args["--config_file"]
instance_file = args["--instance_file"]
seed = int(args["--seed"])
stop_rule = StopRule(args["--stop_rule"])
if stop_rule == StopRule.TARGET:
stop_argument = float(args["--stop_arg"])
else:
stop_argument = int(args["--stop_arg"])
maximum_time = float(args["--max_time"])
if maximum_time <= 0.0:
raise RuntimeError(f"Maximum time must be larger than 0.0. "
f"Given {maximum_time}.")
perform_evolution = not args["--no_evolution"]
########################################
# Load config file and show basic info.
########################################
brkga_params, control_params = load_configuration(configuration_file)
print(f"""------------------------------------------------------
> Experiment started at {datetime.now()}
> Instance: {instance_file}
> Configuration: {configuration_file}
> Algorithm Parameters:""",
end="")
if not perform_evolution:
print("> - Simple multi-start: on (no evolutionary operators)")
else:
output_string = ""
for name, value in vars(brkga_params).items():
output_string += f"\n> -{name} {value}"
for name, value in vars(control_params).items():
output_string += f"\n> -{name} {value}"
print(output_string)
print(f"""> Seed: {seed}
> Stop rule: {stop_rule}
> Stop argument: {stop_argument}
> Maximum time (s): {maximum_time}
------------------------------------------------------""")
########################################
# Load instance and adjust BRKGA parameters
########################################
print(f"\n[{datetime.now()}] Reading TSP data...")
instance = TSPInstance(instance_file)
print(f"Number of nodes: {instance.num_nodes}")
print(f"\n[{datetime.now()}] Generating initial tour...")
# Generate a greedy solution to be used as warm start for BRKGA.
initial_cost, initial_tour = greedy_tour(instance)
print(f"Initial cost: {initial_cost}")
########################################
# Build the BRKGA data structures and initialize
########################################
print(f"\n[{datetime.now()}] Building BRKGA data...")
# Usually, it is a good idea to set the population size
# proportional to the instance size.
brkga_params.population_size = min(brkga_params.population_size,
10 * instance.num_nodes)
print(f"New population size: {brkga_params.population_size}")
# Build a decoder object.
decoder = TSPDecoder(instance)
# Chromosome size is the number of nodes.
# Each chromosome represents a permutation of nodes.
brkga = BrkgaMpIpr(decoder=decoder,
sense=Sense.MINIMIZE,
seed=seed,
chromosome_size=instance.num_nodes,
params=brkga_params,
evolutionary_mechanism_on=perform_evolution)
# To inject the initial tour, we need to create chromosome representing
# that solution. First, we create a set of keys to be used in the
# chromosome.
random.seed(seed)
keys = sorted([random.random() for _ in range(instance.num_nodes)])
# Then, we visit each node in the tour and assign to it a key.
initial_chromosome = [0] * instance.num_nodes
for i in range(instance.num_nodes):
initial_chromosome[initial_tour[i]] = keys[i]
# Inject the warm start solution in the initial population.
brkga.set_initial_population([initial_chromosome])
# NOTE: don't forget to initialize the algorithm.
print(f"\n[{datetime.now()}] Initializing BRKGA data...")
brkga.initialize()
########################################
# Warm up the script/code
########################################
# To make sure we are timing the runs correctly, we run some warmup
# iterations with bogus data. Warmup is always recommended for script
# languages. Here, we call the most used methods.
print(f"\n[{datetime.now()}] Warming up...")
bogus_alg = deepcopy(brkga)
bogus_alg.evolve(2)
# TODO (ceandrade): warm up path relink functions.
# bogus_alg.path_relink(brkga_params.pr_type, brkga_params.pr_selection,
# (x, y) -> 1.0, (x, y) -> true, 0, 0.5, 1, 10.0, 1.0)
bogus_alg.get_best_fitness()
bogus_alg.get_best_chromosome()
bogus_alg = None
########################################
# Evolving
########################################
print(f"\n[{datetime.now()}] Evolving...")
print("* Iteration | Cost | CurrentTime")
best_cost = initial_cost * 2
best_chromosome = initial_chromosome
iteration = 0
last_update_time = 0.0
last_update_iteration = 0
large_offset = 0
# TODO (ceandrade): enable the following when path relink is ready.
# path_relink_time = 0.0
# num_path_relink_calls = 0
# num_homogenities = 0
# num_best_improvements = 0
# num_elite_improvements = 0
run = True
# Main optimization loop. We evolve one generation at time,
# keeping track of all changes during such process.
start_time = time.time()
while run:
iteration += 1
# Evolves one iteration.
brkga.evolve()
# Checks the current results and holds the best.
fitness = brkga.get_best_fitness()
if fitness < best_cost:
last_update_time = time.time() - start_time
update_offset = iteration - last_update_iteration
if large_offset < update_offset:
large_offset = update_offset
last_update_iteration = iteration
best_cost = fitness
best_chromosome = brkga.get_best_chromosome()
print(f"* {iteration} | {best_cost:.0f} | {last_update_time:.2f}")
# end if
# TODO (ceandrade): implement path relink calls here.
# Please, see Julia version for that.
iter_without_improvement = iteration - last_update_iteration
# Check stop criteria.
run = not (
(time.time() - start_time > maximum_time) or
(stop_rule == StopRule.GENERATIONS and iteration == stop_argument)
or (stop_rule == StopRule.IMPROVEMENT
and iter_without_improvement >= stop_argument) or
(stop_rule == StopRule.TARGET and best_cost <= stop_argument))
# end while
total_elapsed_time = time.time() - start_time
total_num_iterations = iteration
print(f"[{datetime.now()}] End of optimization\n")
print(f"Total number of iterations: {total_num_iterations}")
print(f"Last update iteration: {last_update_iteration}")
print(f"Total optimization time: {total_elapsed_time:.2f}")
print(f"Last update time: {last_update_time:.2f}")
print(f"Large number of iterations between improvements: {large_offset}")
# TODO (ceandrade): enable when path relink is ready.
# print(f"\nTotal path relink time: {path_relink_time:.2f}")
# print(f"\nTotal path relink calls: {num_path_relink_calls}")
# print(f"\nNumber of homogenities: {num_homogenities}")
# print(f"\nImprovements in the elite set: {num_elite_improvements}")
# print(f"\nBest individual improvements: {num_best_improvements}")
########################################
# Extracting the best tour
########################################
tour = []
for (index, key) in enumerate(best_chromosome):
tour.append((key, index))
tour.sort()
print(f"\n% Best tour cost: {best_cost:.2f}")
print("% Best tour: ", end="")
for _, node in tour:
print(node, end=" ")
print(
"\n\nInstance,Seed,NumNodes,TotalIterations,TotalTime,"
#"TotalPRTime,PRCalls,NumHomogenities,NumPRImprovElite,"
#"NumPrImprovBest,"
"LargeOffset,LastUpdateIteration,LastUpdateTime,"
"Cost")
print(
f"{basename(instance_file)},"
f"{seed},{instance.num_nodes},{total_num_iterations},"
f"{total_elapsed_time:.2f},"
# f"{path_relink_time:.2f},{num_path_relink_calls},"
# f"{num_homogenities},{num_elite_improvements},{num_best_improvements},"
f"{large_offset},{last_update_iteration},"
f"{last_update_time:.2f},{best_cost:.0f}")
def gen_conf5():
param_values = deepcopy(default_param_values)
brkga_params = param_values["params"]
chromosome_size = 100
instance = Instance(chromosome_size)
brkga_params.population_size = 100
brkga_params.elite_percentage = 0.30
brkga_params.mutants_percentage = 0.20
brkga_params.num_elite_parents = 2
brkga_params.total_parents = 3
brkga_params.bias_type = BiasFunctionType.LOGINVERSE
brkga_params.num_independent_populations = 3
brkga_params.pr_number_pairs = 0
brkga_params.pr_minimum_distance = 0.0
brkga_params.pr_type = PathRelinkingType.DIRECT
brkga_params.pr_selection = PathRelinkingSelection.BESTSOLUTION
brkga_params.alpha_block_size = 1.0
brkga_params.pr_percentage = 1.0
param_values["decoder"] = SumDecode(instance)
param_values["sense"] = Sense.MINIMIZE
param_values["seed"] = 4659930950303
param_values["chromosome_size"] = chromosome_size
param_values["evolutionary_mechanism_on"] = True
print("\n> Building configuration 5")
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
print("> Writing configuration 5")
with open(os.path.join(STATE_DIR, "state5.pickle"), "wb") as hd:
pickle.dump(brkga, hd)
print("> Evolving one generation...")
brkga.evolve()
fitness1 = brkga.get_best_fitness()
chromosome1 = brkga.get_best_chromosome()
print("> Evolving 10 generations...")
brkga.evolve(10)
fitness10 = brkga.get_best_fitness()
chromosome10 = brkga.get_best_chromosome()
print("> Evolving 100 generations...")
brkga.evolve(100)
fitness100 = brkga.get_best_fitness()
chromosome100 = brkga.get_best_chromosome()
with open(os.path.join(SOLUTION_DIR, "best_solution5.pickle"), "wb") as hd:
pickle.dump(
{
"fitness1": fitness1,
"chromosome1": chromosome1,
"fitness10": fitness10,
"chromosome10": chromosome10,
"fitness100": fitness100,
"chromosome100": chromosome100
},
hd
)
print("fitness", fitness1)
print("fitness", fitness10)
print("fitness", fitness100)
def gen_conf4():
param_values = deepcopy(default_param_values)
brkga_params = param_values["params"]
chromosome_size = 500
instance = Instance(chromosome_size)
brkga_params.population_size = 100
brkga_params.elite_percentage = 0.35
brkga_params.mutants_percentage = 0.15
brkga_params.num_elite_parents = 1
brkga_params.total_parents = 2
brkga_params.bias_type = BiasFunctionType.EXPONENTIAL
brkga_params.num_independent_populations = 3
brkga_params.pr_number_pairs = 0
brkga_params.pr_minimum_distance = 0.0
brkga_params.pr_type = PathRelinkingType.DIRECT
brkga_params.pr_selection = PathRelinkingSelection.BESTSOLUTION
brkga_params.alpha_block_size = 1.0
brkga_params.pr_percentage = 1.0
param_values["decoder"] = SumDecode(instance)
param_values["sense"] = Sense.MINIMIZE
param_values["seed"] = 2947804214761
param_values["chromosome_size"] = chromosome_size
param_values["evolutionary_mechanism_on"] = True
print("\n> Building configuration 4")
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
rho = 0.75
brkga.set_bias_custom_function(lambda x: rho if x == 1 else 1.0 - rho)
print("> Writing configuration 4")
with open(os.path.join(STATE_DIR, "state4.pickle"), "wb") as hd:
pickle.dump(brkga, hd)
print("> Evolving population 0...")
brkga.evolve_population(0)
fitness1 = brkga.get_best_fitness()
chromosome1 = brkga.get_best_chromosome()
print("> Evolving population 1...")
brkga.evolve_population(1)
fitness2 = brkga.get_best_fitness()
chromosome2 = brkga.get_best_chromosome()
print("> Evolving population 2...")
brkga.evolve_population(2)
fitness3 = brkga.get_best_fitness()
chromosome3 = brkga.get_best_chromosome()
print("> Evolving both populations for 100 generations...")
for _ in range(100):
start_time = time()
brkga.evolve_population(0)
brkga.evolve_population(1)
brkga.evolve_population(2)
print(f"Elapsed time: {time() - start_time :.2f}")
fitness103 = brkga.get_best_fitness()
chromosome103 = brkga.get_best_chromosome()
with open(os.path.join(SOLUTION_DIR, "best_solution4.pickle"), "wb") as hd:
pickle.dump(
{
"fitness1": fitness1,
"chromosome1": chromosome1,
"fitness2": fitness2,
"chromosome2": chromosome2,
"fitness3": fitness2,
"chromosome3": chromosome2,
"fitness103": fitness103,
"chromosome103": chromosome103,
},
hd
)
def gen_conf3():
param_values = deepcopy(default_param_values)
brkga_params = param_values["params"]
chromosome_size = 500
instance = Instance(chromosome_size)
brkga_params.population_size = 100
brkga_params.elite_percentage = 0.35
brkga_params.mutants_percentage = 0.17
brkga_params.num_elite_parents = 3
brkga_params.total_parents = 5
brkga_params.bias_type = BiasFunctionType.EXPONENTIAL
brkga_params.num_independent_populations = 5
brkga_params.pr_number_pairs = 0
brkga_params.pr_minimum_distance = 0.0
brkga_params.pr_type = PathRelinkingType.DIRECT
brkga_params.pr_selection = PathRelinkingSelection.BESTSOLUTION
brkga_params.alpha_block_size = 1.0
brkga_params.pr_percentage = 1.0
param_values["decoder"] = SumDecode(instance)
param_values["sense"] = Sense.MINIMIZE
param_values["seed"] = 253624607406
param_values["chromosome_size"] = chromosome_size
param_values["evolutionary_mechanism_on"] = True
print("\n> Building configuration 3")
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
print("> Writing configuration 3")
with open(os.path.join(STATE_DIR, "state3.pickle"), "wb") as hd:
pickle.dump(brkga, hd)
print("> Evolving both populations for one generation...")
for i in range(brkga_params.num_independent_populations):
brkga.evolve_population(i)
fitness1 = brkga.get_best_fitness()
chromosome1 = brkga.get_best_chromosome()
print("> Evolving both populations for another generation...")
for i in range(brkga_params.num_independent_populations):
brkga.evolve_population(i)
brkga.evolve_population(1)
fitness2 = brkga.get_best_fitness()
chromosome2 = brkga.get_best_chromosome()
print("> Evolving both populations for 100 generations...")
for _ in range(100):
start_time = time()
for i in range(brkga_params.num_independent_populations):
brkga.evolve_population(i)
print(f"Elapsed time: {time() - start_time :.2f}")
fitness102 = brkga.get_best_fitness()
chromosome102 = brkga.get_best_chromosome()
with open(os.path.join(SOLUTION_DIR, "best_solution3.pickle"), "wb") as hd:
pickle.dump(
{
"fitness1": fitness1,
"chromosome1": chromosome1,
"fitness2": fitness2,
"chromosome2": chromosome2,
"fitness102": fitness102,
"chromosome102": chromosome102,
},
hd
)
print("fitness", fitness1)
# print("chromosome", chromosome1)
print("fitness", fitness2)
# print("chromosome", chromosome2)
print("fitness", fitness102)
def gen_conf2():
param_values = deepcopy(default_param_values)
brkga_params = param_values["params"]
chromosome_size = 1000
instance = Instance(chromosome_size)
brkga_params.population_size = 500
brkga_params.elite_percentage = 0.25
brkga_params.mutants_percentage = 0.25
brkga_params.num_elite_parents = 5
brkga_params.total_parents = 50
brkga_params.bias_type = BiasFunctionType.QUADRATIC
brkga_params.num_independent_populations = 2
brkga_params.pr_number_pairs = 0
brkga_params.pr_minimum_distance = 0.0
brkga_params.pr_type = PathRelinkingType.DIRECT
brkga_params.pr_selection = PathRelinkingSelection.BESTSOLUTION
brkga_params.alpha_block_size = 1.0
brkga_params.pr_percentage = 1.0
param_values["decoder"] = RankDecode(instance)
param_values["sense"] = Sense.MINIMIZE
param_values["seed"] = 1297832326904308
param_values["chromosome_size"] = chromosome_size
param_values["evolutionary_mechanism_on"] = True
print("\n> Building configuration 2")
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
print("> Writing configuration 2")
with open(os.path.join(STATE_DIR, "state2.pickle"), "wb") as hd:
pickle.dump(brkga, hd)
print("> Evolving population 0...")
brkga.evolve_population(0)
fitness1 = brkga.get_best_fitness()
chromosome1 = brkga.get_best_chromosome()
print("> Evolving population 1...")
brkga.evolve_population(1)
fitness2 = brkga.get_best_fitness()
chromosome2 = brkga.get_best_chromosome()
print("> Evolving both populations for 100 generations...")
for _ in range(100):
start_time = time()
brkga.evolve_population(0)
brkga.evolve_population(1)
print(f"Elapsed time: {time() - start_time :.2f}")
fitness102 = brkga.get_best_fitness()
chromosome102 = brkga.get_best_chromosome()
with open(os.path.join(SOLUTION_DIR, "best_solution2.pickle"), "wb") as hd:
pickle.dump(
{
"fitness1": fitness1,
"chromosome1": chromosome1,
"fitness2": fitness2,
"chromosome2": chromosome2,
"fitness102": fitness102,
"chromosome102": chromosome102,
},
hd
)
def test_evolve_population0(self):
"""
Tests evolve_population() method.
"""
param_values = deepcopy(self.default_param_values)
brkga_params = param_values["params"]
brkga_params.num_independent_populations = 3
brkga_params.num_elite_parents = 1
brkga_params.total_parents = 2
brkga = BrkgaMpIpr(**param_values)
# Not initialized
with self.assertRaises(RuntimeError) as context:
brkga.evolve_population(0)
self.assertEqual(
str(context.exception).strip(),
"The algorithm hasn't been initialized. "
"Call 'initialize()' before 'evolve_population()'")
brkga.initialize()
# Test invalid population indices.
population_index = -1
with self.assertRaises(ValueError) as context:
brkga.evolve_population(population_index)
self.assertEqual(
str(context.exception).strip(), "Population must be in [0, 2]: -1")
population_index = brkga.params.num_independent_populations
with self.assertRaises(ValueError) as context:
brkga.evolve_population(population_index)
self.assertEqual(
str(context.exception).strip(), "Population must be in [0, 2]: 3")
# Save previous and current populations locally
current = deepcopy(brkga._current_populations)
previous = deepcopy(brkga._previous_populations)
########################
# Test if algorithm swaps the populations correctly
########################
for i in range(brkga_params.num_independent_populations):
brkga.evolve_population(i)
# Internal current and previous generation must be different.
self.assertNotEqual(brkga._current_populations[i].chromosomes,
brkga._previous_populations[i].chromosomes)
# The current the from this generation is equal to the previous
# of the next generation.
self.assertEqual(current[i].chromosomes,
brkga._previous_populations[i].chromosomes)
self.assertEqual(current[i].fitness,
brkga._previous_populations[i].fitness)
# The previous of this generation is lost. Just make sure that
# the internal swap gets the new generation, not the current one.
self.assertNotEqual(previous[i].chromosomes,
brkga._current_populations[i].chromosomes)
self.assertNotEqual(previous[i].fitness,
brkga._current_populations[i].fitness)
# end for
print(f"Elapsed time: {time() - self.start_time :.2f}")
def test_initialize(self):
"""
Tests initialize() method.
"""
# Double initialization.
param_values = deepcopy(self.default_param_values)
brkga = BrkgaMpIpr(**param_values)
# 1st initialization.
brkga.initialize()
with self.assertRaises(RuntimeError) as context:
# 2nd initialization.
brkga.initialize()
self.assertEqual(
str(context.exception).strip(),
"The algorithm is already initialized. "
"Please call 'reset()' instead.")
# Custom function is not defined.
filename = os.path.join(CONFIG_DIR, "custom_bias_function.conf")
brkga_params, _ = load_configuration(filename)
param_values = deepcopy(self.default_param_values)
param_values["params"] = brkga_params
brkga = BrkgaMpIpr(**param_values)
with self.assertRaises(ValueError) as context:
brkga.initialize()
self.assertEqual(
str(context.exception).strip(),
"The bias function is not defined. Call "
"set_bias_custom_function() before call initialize().")
########################
# Test without warmstart
########################
param_values = deepcopy(self.default_param_values)
param_values["sense"] = Sense.MAXIMIZE
params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
self.assertTrue(brkga._initialized,
"Flag 'brkga._initialized' is supposed to be 'True'")
self.assertFalse(
brkga._reset_phase,
"Flag 'brkga._reset_phase' is supposed to be 'False'")
self.assertEqual(len(brkga._current_populations),
params.num_independent_populations)
self.assertEqual(len(brkga._previous_populations),
params.num_independent_populations)
for i in range(params.num_independent_populations):
self.assertEqual(len(brkga._current_populations[i].chromosomes),
params.population_size)
self.assertEqual(len(brkga._current_populations[i].fitness),
params.population_size)
self.assertEqual(len(brkga._previous_populations[i].chromosomes),
params.population_size)
self.assertEqual(len(brkga._previous_populations[i].fitness),
params.population_size)
self.assertEqual(brkga._current_populations[i].chromosomes,
brkga._previous_populations[i].chromosomes)
self.assertIsNot(brkga._current_populations[i].chromosomes,
brkga._previous_populations[i].chromosomes)
correct_order = True
for j in range(1, brkga.params.population_size):
correct_order &= \
brkga._current_populations[i].fitness[j - 1][0] >= \
brkga._current_populations[i].fitness[j][0]
# end for
self.assertTrue(correct_order, "incorrect chromosome order")
# end for
param_values = deepcopy(self.default_param_values)
param_values["sense"] = Sense.MINIMIZE
params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
for i in range(params.num_independent_populations):
correct_order = True
for j in range(1, brkga.params.population_size):
correct_order &= \
brkga._current_populations[i].fitness[j - 1][0] <= \
brkga._current_populations[i].fitness[j][0]
# end for
self.assertTrue(correct_order, "incorrect chromosome order")
# end for
########################
# Test with warmstart
########################
local_rng = Random(param_values["seed"])
chromosomes = [
BaseChromosome([
local_rng.random()
for _ in range(param_values["chromosome_size"])
]),
BaseChromosome([
local_rng.random()
for _ in range(param_values["chromosome_size"])
]),
BaseChromosome([
local_rng.random()
for _ in range(param_values["chromosome_size"])
])
]
param_values = deepcopy(self.default_param_values)
param_values["sense"] = Sense.MINIMIZE
params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
brkga.set_initial_population(chromosomes)
brkga.initialize()
for i in range(params.num_independent_populations):
self.assertEqual(len(brkga._current_populations[i].chromosomes),
params.population_size)
self.assertEqual(len(brkga._current_populations[i].fitness),
params.population_size)
self.assertEqual(len(brkga._previous_populations[i].chromosomes),
params.population_size)
self.assertEqual(len(brkga._previous_populations[i].fitness),
params.population_size)
self.assertEqual(brkga._current_populations[i].chromosomes,
brkga._previous_populations[i].chromosomes)
self.assertIsNot(brkga._current_populations[i].chromosomes,
brkga._previous_populations[i].chromosomes)
# end for
old_chr = deepcopy(chromosomes[0])
param_values["decoder"].decode(chromosomes[0], rewrite=True)
self.assertNotEqual(chromosomes[0], old_chr)
self.assertEqual(brkga._current_populations[0].chromosomes[0],
chromosomes[0])
# Create a local chromosome and applied the decoder on it.
local_rng = Random(param_values["seed"])
for _ in range(1000):
local_rng.random()
local_chr = BaseChromosome([
local_rng.random() for _ in range(param_values["chromosome_size"])
])
param_values["decoder"].decode(local_chr, rewrite=True)
# 4th chromosome must be the 1st generated one due to the warmstart.
self.assertEqual(brkga._current_populations[0].chromosomes[3],
local_chr)
########################
# Test reset phase
########################
param_values = deepcopy(self.default_param_values)
params = param_values["params"]
brkga = BrkgaMpIpr(**param_values)
brkga.initialize()
# Create a local RNG and advance it until the same state as the
# internal BRKGA RNG after initialization.
local_rng = Random(param_values["seed"])
skip = 1000 + params.num_independent_populations * \
params.population_size * brkga.chromosome_size
for _ in range(skip):
local_rng.random()
self.assertEqual(brkga._rng.getstate(), local_rng.getstate())
brkga._reset_phase = True
brkga.initialize()
# Create a local chromosome and applied the decoder on it.
local_chr = BaseChromosome([
local_rng.random() for _ in range(param_values["chromosome_size"])
])
param_values["decoder"].decode(local_chr, rewrite=True)
self.assertEqual(brkga._current_populations[0].chromosomes[0],
local_chr)