def __init__(self, K, threads):
self.logger = logging.getLogger()
self.K = K
self.compl = bytes.maketrans('ACGT', 'TGCA')
self.kmerCols, self.kmerToCanonicalIndex = self.__makeKmerColNames()
self.totalThreads = threads
compare_attrs)
return dict([(k, getattr(self, k)) for k in compare_attrs
if hasattr(self, k) and k not in ("passwd", "password")])
def diffSets(old, new):
if not isinstance(old, set):
old = set(old)
if not isinstance(new, set):
new = set(new)
return old - new, new - old
# Remove potentially harmful characters from builder name if it is to be
# used as the build dir.
badchars_map = bytes.maketrans(b"\t !#$%&'()*+,./:;<=>?@[\\]^{|}~",
b"______________________________")
def safeTranslate(s):
if isinstance(s, text_type):
s = s.encode('utf8')
return s.translate(badchars_map)
def encodeString(s, encoding='utf-8'):
if isinstance(s, text_type):
return s.encode(encoding)
return s
def none_or_str(x):
return {k: getattr(self, k)
for k in compare_attrs
if hasattr(self, k) and k not in ("passwd", "password")}
def diffSets(old, new):
if not isinstance(old, set):
old = set(old)
if not isinstance(new, set):
new = set(new)
return old - new, new - old
# Remove potentially harmful characters from builder name if it is to be
# used as the build dir.
badchars_map = bytes.maketrans(b"\t !#$%&'()*+,./:;<=>?@[\\]^{|}~",
b"______________________________")
def safeTranslate(s):
if isinstance(s, str):
s = s.encode('utf8')
return s.translate(badchars_map)
def none_or_str(x):
if x is not None and not isinstance(x, str):
return str(x)
return x
def unicode2bytes(x, encoding='utf-8', errors='strict'):
