Python get_reader Beispiele

Beispiel #1

Datei: align_print_template.py Projekt: yyxql/Genomics_Docker

def main():

    # Parse command line arguments
    options, args = doc_optparse.parse(__doc__)

    try:
        template = Template(args[0])
        format = options.format
        if not format: format = "maf"
    except:
        doc_optparse.exception()

    reader = align.get_reader(format, sys.stdin)

    for a in reader:
        template.a = a
        template.c = a.components
        print template

Beispiel #2

Datei: align_print_template.py Projekt: apratap/qaqc_reports

def main():

    # Parse command line arguments
    options, args = doc_optparse.parse( __doc__ )

    try:
        template = Template( args[0] )
        format = options.format
        if not format: format = "maf"
    except:
        doc_optparse.exception()

    reader = align.get_reader( format, sys.stdin ) 

    for a in reader: 
        template.a = a
        template.c = a.components
        print template