def upperLeftCornerOfBase(self, idx: int, strand: StrandT) -> Vec2T:
        """
        Args:
            idx: the base index within the virtual helix
            strand: Description

        Returns:
            Tuple of upperLeftCornerOfBase
        """
        x = idx * _BASE_WIDTH
        y = 0 if strand.isForward() else _BASE_WIDTH
        return x, y
Beispiel #2
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    def upperLeftCornerOfBase(self, idx: int, strand: StrandT) -> Vec2T:
        """
        Args:
            idx: the base index within the virtual helix
            strand: Description

        Returns:
            Tuple of upperLeftCornerOfBase
        """
        x = idx * _BASE_WIDTH
        y = 0 if strand.isForward() else _BASE_WIDTH
        return x, y
Beispiel #3
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 def __init__(self,  virtual_helix_item: PathVirtualHelixItemT,
                     strand: StrandT,
                     insertion: InsertionT):
     super(InsertionItem, self).__init__(virtual_helix_item)
     self.hide()
     self._strand = strand
     self._insertion = insertion
     self._seq_item = QGraphicsPathItem(parent=self)
     self._is_on_top = is_on_top = strand.isForward()
     y = 0 if is_on_top else _BW
     self.setPos(_BW*insertion.idx(), y)
     self.setZValue(styles.ZINSERTHANDLE)
     self._initLabel()
     self._initClickArea()
     self.updateItem()
     self.show()