def undo(self):
olg = self._oligo
o_s = ''.join(self._old_sequence) if self._old_sequence else None
oligo_list = [olg]
for strand in olg.strand5p().generator3pStrand():
used_seq, o_s = strand.setSequence(o_s)
# get the compliment ahead of time
used_seq = util.comp(used_seq) if used_seq else None
comp_ss = strand.strandSet().complementStrandSet()
for comp_strand in comp_ss._findOverlappingRanges(strand):
sub_used_seq = comp_strand.setComplementSequence(
used_seq, strand)
oligo_list.append(comp_strand.oligo())
# end for
# for
for oligo in oligo_list:
oligo.oligoSequenceAddedSignal.emit(oligo)
# end def
# end class
def reapplySequence(self):
"""
"""
comp_ss = self.strandSet().complementStrandSet()
# the strand sequence will need to be regenerated from scratch
# as there are no guarantees about the entirety of the strand moving
# i.e. both endpoints thanks to multiple selections so just redo the
# whole thing
self._sequence = None
for comp_strand in comp_ss.getOverlappingStrands(
self._base_idx_low, self._base_idx_high):
comp_seq = comp_strand.sequence()
used_seq = util.comp(comp_seq) if comp_seq else None
used_seq = self.setComplementSequence(used_seq, comp_strand)
def reapplySequence(self):
"""
"""
comp_ss = self.strandSet().complementStrandSet()
# the strand sequence will need to be regenerated from scratch
# as there are no guarantees about the entirety of the strand moving
# i.e. both endpoints thanks to multiple selections so just redo the
# whole thing
self._sequence = None
for comp_strand in comp_ss._findOverlappingRanges(self):
compSeq = comp_strand.sequence()
usedSeq = util.comp(compSeq) if compSeq else None
usedSeq = self.setComplementSequence(
usedSeq, comp_strand)
def undo(self):
olg = self._oligo
o_s = ''.join(self._old_sequence) if self._old_sequence else None
oligo_list = [olg]
for strand in olg.strand5p().generator3pStrand():
used_seq, o_s = strand.setSequence(o_s)
# get the compliment ahead of time
used_seq = util.comp(used_seq) if used_seq else None
for comp_strand in strand.getComplementStrands():
comp_strand.setComplementSequence(used_seq, strand)
oligo_list.append(comp_strand.oligo())
# end for
# for
for oligo in oligo_list:
oligo.oligoSequenceAddedSignal.emit(oligo)
def redo(self):
olg = self._oligo
n_s = ''.join(self._new_sequence) if self._new_sequence else None
n_s_original = self._new_sequence
oligo_list = [olg]
for strand in olg.strand5p().generator3pStrand():
used_seq, n_s = strand.setSequence(n_s)
# get the compliment ahead of time
used_seq = util.comp(used_seq) if used_seq else None
for comp_strand in strand.getComplementStrands():
comp_strand.setComplementSequence(used_seq, strand)
oligo_list.append(comp_strand.oligo())
# end for
# as long as the new Applied Sequence is not None
if n_s is None and n_s_original:
break
# end for
for oligo in oligo_list:
oligo.oligoSequenceAddedSignal.emit(oligo)
def undo(self):
olg = self._oligo
o_s = ''.join(self._old_sequence) if self._old_sequence else None
oligo_list = [olg]
for strand in olg.strand5p().generator3pStrand():
used_seq, o_s = strand.setSequence(o_s)
# get the compliment ahead of time
used_seq = util.comp(used_seq) if used_seq else None
for comp_strand in strand.getComplementStrands():
sub_used_seq = comp_strand.setComplementSequence(used_seq, strand)
oligo_list.append(comp_strand.oligo())
# end for
# for
for oligo in oligo_list:
oligo.oligoSequenceAddedSignal.emit(oligo)
def redo(self):
olg = self._oligo
n_s = ''.join(self._new_sequence) if self._new_sequence else None
n_s_original = self._new_sequence
oligo_list = [olg]
for strand in olg.strand5p().generator3pStrand():
used_seq, n_s = strand.setSequence(n_s)
# get the compliment ahead of time
used_seq = util.comp(used_seq) if used_seq else None
for comp_strand in strand.getComplementStrands():
sub_used_seq = comp_strand.setComplementSequence(used_seq, strand)
oligo_list.append(comp_strand.oligo())
# end for
# as long as the new Applied Sequence is not None
if n_s is None and n_s_original:
break
# end for
for oligo in oligo_list:
oligo.oligoSequenceAddedSignal.emit(oligo)
