t_mmap_online = time()
fname = save_tif_to_mmap_online(
'k31_20160104_MMA_150um_65mW_zoom2p2_00001_00001.tif',
border_to_0=border_to_0,
add_to_movie=add_to_movie)
t_mmap_online_1 = time()
print((t_mmap_online_1 - t_mmap_online))
#%%
#Yr, dims, T = cm.load_memmap(fname)
#d1, d2 = dims
#images = np.reshape(Yr.T, [T] + list(dims), order='F')
images = tifffile.TiffFile(
'k31_20160104_MMA_150um_65mW_zoom2p2_00001_00001.tif')
t_mc_online = time()
shifts, xcorrs, template = motion_correct_online(images,
save_base_name=None,
border_to_0=border_to_0,
add_to_movie=add_to_movie)
t_mc_online_1 = time()
print((t_mc_online_1 - t_mc_online))
#%%
fls = glob.glob('k*.tif')
fls = fls[:3]
t_mmap_mc_online = time()
all_names, all_shifts, all_xcorrs, all_templates = motion_correct_online_multifile(
fls, add_to_movie)
t_mmap_mc_online_1 = time()
print((t_mmap_mc_online_1 - t_mmap_mc_online))
#%%
t_mmap_join = time()
fname_new = cm.mmapping.save_memmap_join(all_names,
base_name='Yr_MC_MF_',
def motion_correction_online(self,max_shift_w=25,max_shift_h=25,init_frames_template=100,show_movie=False,bilateral_blur=False,template=None,min_count=1000):
return motion_correct_online(self,max_shift_w=max_shift_w,max_shift_h=max_shift_h,init_frames_template=init_frames_template,show_movie=show_movie,bilateral_blur=bilateral_blur,template=template,min_count=min_count)
name_new.sort()
print(name_new)
t_mmap_1 = time()
print((t_mmap_1-t_mmap))
#%%
t_mmap_online = time()
fname = save_tif_to_mmap_online('k31_20160104_MMA_150um_65mW_zoom2p2_00001_00001.tif',border_to_0=border_to_0,add_to_movie=add_to_movie)
t_mmap_online_1 = time()
print((t_mmap_online_1-t_mmap_online))
#%%
#Yr, dims, T = cm.load_memmap(fname)
#d1, d2 = dims
#images = np.reshape(Yr.T, [T] + list(dims), order='F')
images = tifffile.TiffFile('k31_20160104_MMA_150um_65mW_zoom2p2_00001_00001.tif')
t_mc_online = time()
shifts,xcorrs,template = motion_correct_online(images, save_base_name=None,border_to_0=border_to_0,add_to_movie=add_to_movie)
t_mc_online_1 = time()
print((t_mc_online_1-t_mc_online))
#%%
fls = glob.glob('k*.tif')
fls=fls[:3]
t_mmap_mc_online = time()
all_names, all_shifts, all_xcorrs, all_templates = motion_correct_online_multifile(fls,add_to_movie)
t_mmap_mc_online_1 = time()
print((t_mmap_mc_online_1 - t_mmap_mc_online))
#%%
t_mmap_join = time()
fname_new = cm.mmapping.save_memmap_join(all_names, base_name= 'Yr_MC_MF_', n_chunks=100, dview=dview,async=False)
t_mmap_join_1 = time()
print((t_mmap_join_1 - t_mmap_join))
#%%
