def getAllDatasets(self):
"""
Gets all datasets available
"""
path = 'datasets/search'
request = protocol.SearchDatasetsRequest()
responseData = self.sendSearchRequest(
path, request, protocol.SearchDatasetsResponse)
return responseData.datasets
def testPhenotypeAssociationSetSearch(self):
request = protocol.SearchDatasetsRequest()
response = self.sendSearchRequest(
"datasets/search",
request,
protocol.SearchDatasetsResponse)
datasetId = response.datasets[0].id
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = datasetId
response = self.sendSearchRequest(
"phenotypeassociationsets/search",
request,
protocol.SearchPhenotypeAssociationSetsResponse)
# there should be an array
self.assertIsNotNone(response.phenotype_association_sets)
# there should be at least one entry
self.assertGreater(len(response.phenotype_association_sets), 0)
def getPhenotypeAssociationSetId(self):
"""
Gets the dataset phenotype association set ID
"""
request = protocol.SearchDatasetsRequest()
response = self.sendSearchRequest(
"datasets/search",
request,
protocol.SearchDatasetsResponse)
datasetId = response.datasets[0].id
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = datasetId
response = self.sendPostRequest(
"phenotypeassociationsets/search", request)
response = self.deserialize(
response.data, protocol.SearchPhenotypeAssociationSetsResponse)
return response.phenotype_association_sets[0].id
def sendDatasetsSearch(self):
request = protocol.SearchDatasetsRequest()
return self.sendPostRequest('/datasets/search', request)
def testSearchDatasets(self):
request = protocol.SearchDatasetsRequest()
request.page_size = self.pageSize
self.httpClient.search_datasets()
self.httpClient._run_search_request.assert_called_once_with(
request, "datasets", protocol.SearchDatasetsResponse)