def test_no_results(self):
client = Client()
with self.assertRaises(err.NoMatchesError):
client.search_fasta(
fasta=
'>test\nAAAAAAGGGGGAAAAAGGGGAAAAAAGGGGGAAAAAGGGGGAAAAGGGGGAAAAA'
)
def test_basic(self):
client = Client()
response = client.search_fasta(fasta_file=self.test_fasta_file1)
self.assertIsInstance(response, ResultResponse)
re_expected_id = r'1.10.8.10[\-/]FF[\-/][0-9]+'
self.assertRegex(response.as_json(pp=True), re_expected_id)
self.assertRegex(response.funfam_scan.as_json(), re_expected_id)
self.assertRegex(response.funfam_scan.as_tsv(), re_expected_id)
self.assertRegex(response.funfam_resolved_scan.as_tsv(),
re_expected_id)
def test_resolved_results(self):
client = Client()
response = client.search_fasta(fasta_file=self.test_fasta_file2)
LOG.info("funfam_resolved_scan.as_tsv: %s",
response.funfam_resolved_scan.as_tsv())
self.assertEqual(len(response.funfam_resolved_scan.results), 1,
'resolved_scan has one result')
first_result = response.funfam_resolved_scan.results[0]
self.assertEqual(
len(first_result.hits), 2,
'first resolved_scan result has correct number of hits')
def test_bad_url(self):
client = Client(base_url='http://invalid.base_url.that.does.not.exist')
with self.assertRaises(err.HttpError):
client.search_fasta(fasta_file=self.test_fasta_file1)